Use of restriction fragment length polymorphism analysis to differentiate fungal strains in Sunchang meju

Food Science and Biotechnology

Volumn 17, Issue 4, 2008, Pages 888-891

  Jung, Jong Hyun ^a   Seo, Dong Ho ^a   Bhoo, Sung Hee ^a   Ha, Suk Jin ^a   Kim, Jong Sang ^b   Jeong, Hwan Kim ^c   Dae, Young Kwon ^d   Cha, Jaeho ^e   Park, Cheon Seok ^a  

^a Kyung Hee University   (South Korea)

^b Kyungpook National University   (South Korea)

^c Gyeongsang National University   (South Korea)

^d Korea Food Research Institute   (South Korea)

^e Pusan National University   (South Korea)

Author keywords

Aspergillus fumigatus; Aspergillus oryzae; Internal transcribed spacer restriction fragment length polymorphism (ITS RFLP); meju

Indexed keywords

ARTHRINIUM; ASPERGILLUS; ASPERGILLUS FUMIGATUS; ASPERGILLUS ORYZAE; ASPERGILLUS SYDOWII; FUSARIUM; FUSARIUM ASIATICUM; GLYCINE MAX;

EID: 56349084310     PISSN: 12267708     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (20)

1. Park KY, Jung KO, Rhee SH, Choi YH. Antimutagenic effects of doenjang (Korean fermented soypaste) and its active compounds. Mutat. Res. 523-524: 43-53 (2003)
2. Kim YM, Lee BH, Park KJ, Lee BK. Fungal microflora on Korean home-made meju. Korean J. Mycol. 5: 7-12 (1977)
3. Lee SS, Park DH, Sung CK, Yoo JY. Studies on the yellow fungal isolates (Aspergillus species) inhabiting at the cereals in Korea. Korean J. Mycol. 25: 35-45 (1997)
4. de Souza-Motta CM, de Queiroz Cavalcanti MA, dos Santos Fernandes MJ, Lima DMM, Nascimento JP, Laranjeira D. Identification and characterization of filamentous fungi isolated from the sunflower (Helianthus annus L.) rhizosphere according to their capacity to hydrolyse inulin. Braz. J. Microbiol. 34: 273-280 (2003)
5. Gardes M, Bruns TD. ITS-RFLP matching for identification of fungi. Method Mol. Biol. 50: 177-186 (1996)
6. Bougoure JJ, Bougoure DS, Cairney JW, Dearnaley JD. ITS-RFLP and sequence analysis of endophytes from Acianthus, Caladenia, and Pterostylis (Orchidaceae) in southeastern Queensland. Mycol. Res. 109: 452-460 (2005)
7. Martinez-Culebras PV, Ramon D. An ITS-RFLP method to identify black Aspergillus isolates responsible for OTA contamination in grapes and wine. Int. J. Food Microbiol. 113: 147-153 (2007)
8. Korabecna M, Liska V, Fajfrlik K. Primers ITS1, ITS2, and ITS4 detect the intraspecies variability in the internal transcribed spacers and 5.8S rRNA gene region in clinical isolates of fungi. Folia Microbiol. (Praha) 48: 233-238 (2003)
9. White T, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungi ribosomal RNA genes for phylogenetics. pp. 315-322. In: PCR Protocols. A Guide to Methods and Applications. Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds). Academic Press, San Diego, CA, USA (1990)
10. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL
11. Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425 (1987)
12. Felsenstein I. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-789 (1985)
13. Kumar S, Tamura K, Nei M. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5: 150-163 (2004)
14. Esteve-Zarzoso B, Belloch C, Uruburu F, Querol A. Identification of yeasts by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Int. J. Syst. Bacteriol. 49: 329-337 (1999)
15. Rahman TJ, Marchant R, Banat IM. Distribution and molecular investigation of highly thermophilic bacteria associated with cool soil environments. Biochem. Soc. T. 32: 209-213 (2004)
16. Kobayashi T, Abe K, Asai K, Gomi K, Juvvadi PR, Kato M, Kitamoto K, Takeuchi M, Machida M. Genomics of Aspergillus oryzae. Biosci. Biotech. Bioch. 71: 646-670 (2007)
17. Jiao W, Blunt JW, Cole AL, Munro MH. Fumagiringillin, a new fumagillin derivative from a strain of the fungus Aspergillus fumigatus. J. Nat. Prod. 67: 1434-1437 (2004)
18. Lefkove B, Govindarajan B, Arbiser JL. Fumagillin: An anti-infective as a parent molecule for novel angiogenesis inhibitors. Expert Rev. Anti. Infe. 5: 573-579 (2007)
19. Guillamon JM, Sabate J, Barrio E, Cano J, Querol A. Rapid identification of wine yeast species based on RFLP analysis of the ribosomal internal transcribed spacer (ITS) region. Arch. Microbiol. 169: 387-392 (1998)
20. de Llanos Frutos R, Fernandez-Espinar MT, Querol A. Identification of species of the genus Candida by analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Anton. Leeuw. Int. J. G. 85: 175-185 (2004)