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Volumn , Issue , 2007, Pages 257-262

Optimization and evaluation of parallel molecular dynamics simulation on Blue Gene/L

Author keywords

Code optimization; High performance computing; Molecular dynamics (MD) simulation; Scientific computing

Indexed keywords

CODES (SYMBOLS); MOLECULAR DYNAMICS; OPTIMIZATION; QUANTUM CHEMISTRY; SUPERCOMPUTERS;

EID: 56149099653     PISSN: 10272658     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (2)

References (7)
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    • Molecular dynamics simulation of dimeric and monomeric forms of human Prion protein: Insight into dynamics and properties
    • M. Sekijima, C. Motono, S. Yamasaki, K. Kaneko, and Y. Akiyama, Molecular dynamics simulation of dimeric and monomeric forms of human Prion protein: Insight into dynamics and properties, Biophysical Journal ,85, 2003,pp.1176-1185.
    • (2003) Biophysical Journal , vol.85 , pp. 1176-1185
    • Sekijima, M.1    Motono, C.2    Yamasaki, S.3    Kaneko, K.4    Akiyama, Y.5
  • 2
    • 21044437801 scopus 로고    scopus 로고
    • Overview of the Blue Gene/L system architecture
    • A. Gara, et al. Overview of the Blue Gene/L system architecture, IBM Journal of Research and Development, vol.49, Number 2/3, 2005, pp.195-210..
    • (2005) IBM Journal of Research and Development , vol.49 , Issue.2-3 , pp. 195-210
    • Gara, A.1
  • 3
    • 56149120086 scopus 로고    scopus 로고
    • Highly Parallelization of Lattice QCD program for Blue Gene
    • Tokyo, Japan
    • J.Doi, et al. Highly Parallelization of Lattice QCD program for Blue Gene, IPSJ High Performance Computing Symposium 2006, Tokyo, Japan, 2006, pp.87-94.
    • (2006) IPSJ High Performance Computing Symposium 2006 , pp. 87-94
    • Doi, J.1
  • 4
    • 21044454029 scopus 로고    scopus 로고
    • Design and exploitation of a highperformance SIMD floating-point unit for Blue Gene/L
    • S. Chatterjee, et al. Design and exploitation of a highperformance SIMD floating-point unit for Blue Gene/L, IBM Journal of Research and Development, vol.49, Number 2/3, 2005, pp.377-391.
    • (2005) IBM Journal of Research and Development , vol.49 , Issue.2-3 , pp. 377-391
    • Chatterjee, S.1
  • 5
    • 56149088592 scopus 로고    scopus 로고
    • D.A. Case, T.A. Darden, T.E. Cheatham, III, C.L. Simmerling, J. Wang, R.E. Duke, R. Luo, K.M. Merz, D.A. Pearlman, M. Crowley, R.C. Walker, B. Wang, S. Hayik, A. Roitberg, G. Seabra, X. Wu, S. Brozell, V. Tsui, H. Gohlke, L. Yang, C. Tan, J. Mongan, V. Hornak, G. Cui, P. Beroza, D.H. Mathews, C. Schafmeister, W.S. Ross, and P.A. Kollman,2006, AMBER 9, University of California, San Francisco.
    • D.A. Case, T.A. Darden, T.E. Cheatham, III, C.L. Simmerling, J. Wang, R.E. Duke, R. Luo, K.M. Merz, D.A. Pearlman, M. Crowley, R.C. Walker, B. Wang, S. Hayik, A. Roitberg, G. Seabra, X. Wu, S. Brozell, V. Tsui, H. Gohlke, L. Yang, C. Tan, J. Mongan, V. Hornak, G. Cui, P. Beroza, D.H. Mathews, C. Schafmeister, W.S. Ross, and P.A. Kollman,2006, AMBER 9, University of California, San Francisco.
  • 6
    • 84947351879 scopus 로고
    • Parallel computers and molecular simulation
    • D. Fincham, Parallel computers and molecular simulation. Molecular Simulation, 1, 1987, pp1-45.
    • (1987) Molecular Simulation , vol.1 , pp. 1-45
    • Fincham, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.