The rule-based language XL and the modelling environment GroIMP illustrated with simulated tree competition

Functional Plant Biology

Volumn 35, Issue 10, 2008, Pages 739-750

  Hemmerling, Reinhard ^a   Kniemeyer, Ole ^a,b   Lanwert, Dirk ^b   Kurth, Winfried ^a   Buck Sorlin, Gerhard ^c  

^a BRANDENBURG UNIVERSITY OF TECHNOLOGY   (Germany)

^b UNIVERSITY OF GÖTTINGEN   (Germany)

^c WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Fagus sylvatica L.; Forest; L systems; Picea abies (L.) Karst.; Radiation model

Indexed keywords

ABS RESINS; COMPETITION; COMPUTER PROGRAMMING LANGUAGES; FORESTRY; FORMAL LANGUAGES; FUNCTIONAL POLYMERS; GRAPH THEORY; LINGUISTICS; TREES (MATHEMATICS);

FAGUS SYLVATICA L.; FOREST; L-SYSTEMS; PICEA ABIES (L.) KARST.; RADIATION MODEL;

JAVA PROGRAMMING LANGUAGE;

CONIFEROUS TREE; DECIDUOUS TREE; ENVIRONMENTAL MODELING; PLANT ARCHITECTURE;

COMPETITION; FAGUS SYLVATICA; FORESTS; PICEA ABIES; POLYMERS; RADIATION;

FAGUS; FAGUS SYLVATICA; PICEA; PICEA ABIES;

EID: 55949122715     PISSN: 14454408     EISSN: None     Source Type: Journal    
DOI: 10.1071/FP08052     Document Type: Article

References (34)

1. Batz GV, Kroll M, Geiß R (2008) First experimental evaluation of search plan driven graph pattern matching. In 'Applications of graph transformation with industrial relevance - AGTIVE 2007.' (Eds A Schürr, M Nagel, A Zündorf) pp. 468-483. (Springer: Berlin)
2. Buck-Sorlin G, Kniemeyer O, Kurth W (2005) Barley morphology, genetics and hormonal regulation of internode elongation modelled by a relational growth grammar. The New Phytologist 166(3), 859-867. doi: 10.1111/j.1469-8137.2005.01324.x
3. Buck-Sorlin G, Hemmerling R, Kniemeyer O, Burema B, Kurth W (2008) A rule-based model of barley morphogenesis, with special respect to shading and gibberellic acid signal transduction. Annals of Botany 101(8), 1109-1123. doi: 10.1093/aob/mcm172
4. Chelle M, Andrieu B (1998) The nested radiosity model for the distribution of light within plant canopies. Ecological Modelling 111, 75-91. doi: 10.1016/S0304-3800(98)00100-8
5. Chelle M, Andrieu B (1999) Radiative models for architectural modeling. Agronomie 19, 225-240. doi: 10.1051/agro:19990304
6. Chelle M, Hanan J, Autret H (2004) Lighting virtual crops: the CARIBU solution for open L-systems. In 'Proceedings of the 4th International Workshop on Functional-Structural Plant Models (FSPM04), Montpellier, France'. (Eds C Godin, J Hanan, W Kurth, et al.) (UMR AMAP: Montpellier, France)
7. de Reffye P, Houllier F, Blaise F, Fourcaud T (1997) Essai sur les relations entre l'architecture d'un arbre et la grosseur de ses axes végétatifs. In: 'Modélisation et Simulation de l'Architecture des Végétaux.' pp. 255-423. (Eds J Bouchon, P de Reffye, D Barthélémy) (Science Update, INRA: Paris)
8. Dufrêne E, Davi H, François C, le Maire G, le Dantec V, Granier A (2005) Modelling carbon and water cycles in a beech forest. Part I: model description and uncertainty analysis on modelled NEE. Ecological Modelling 185, 407-436.
9. Foley JD, van Dam A, Feiner SK, Hughes JF (1995) 'Computer graphics: principles and practice in C, 2nd edn.' (Addison-Wesley Professional: Amsterdam)
10. Gautier H, Měch R, Prusinkiewicz P, Varlet-Grancher C (2000) 3D architectural modelling of aerial photomorphogenesis in white clover (Trifolium repens L.) using L-systems. Annals of Botany 85, 359-370. doi: 10.1006/anbo.1999.1069
11. Godin C, Sinoquet H (2005) Functional-structural plant modelling. The New Phytologist 166, 705-708. doi: 10.1111/j.1469-8137.2005.01445.x
12. Godin C, Guédon Y, Costes E, Caraglio Y (1997) Measuring and analysing plants with the AMAPmod software. In 'Plants to ecosystems: advances in computational life sciences'. (Ed. M Michalewicz) pp. 53-84. (CSIRO Australia: Melbourne)
13. Kang MZ, de Reffye P (2007) A mathematical approach estimating source and sink functioning of competing organs. In 'Functional-structural plant modelling in crop production, volume 22'. (Eds J Vos, LFM Marcelis, PHB de Visser, PC Struik, JB Evers) pp. 65-74. (Springer-Verlag: New York)
14. Karwowski R (2002) Improving the Process of Plant Modeling: the L+C Modeling Language. PhD Thesis, University of Calgary.
15. Karwowski R, Prusinkiewicz P (2004) The L-system-based plant-modeling environment L-studio 4.0. In 'Proceedings of the 4th International Workshop on Functional-Structural Plant Models (FSPM04), Montpellier, France'. (Eds C Godin, J Hanan, W Kurth, et al.) (UMR AMAP: Montpellier, France)
16. Kniemeyer O (2008) Design and implementation of a graph grammar based language for functional-structural plant modelling. PhD Thesis, BTU Cottbus. Available at http://www.grogra.de
17. Kniemeyer O, Buck-Sorlin G, Kurth W (2004) A graph-grammar approach to artificial life. Artificial Life 10, 413-431. doi: 10.1162/1064546041766451
18. Kniemeyer O, Buck-Sorlin G, Kurth W (2007) GroIMP as a platform for functional-structural modelling of plants. In 'Functional-structural plant modelling in crop production, volume 22'. (Eds J Vos, LFM Marcelis, PHB de Visser, PC Struik, JB Evers) pp. 43-52. (Springer-Verlag: New York)
19. Kniemeyer O, Barczik G, Hemmerling R, Kurth W (2008) Relational growth grammars - a parallel graph transformation approach with applications in biology and architecture. In 'Applications of graph transformation with industrial relevance - AGTIVE 2007'. (Eds A Schürr, M Nagel, A Zündorf) (Springer: Berlin)
20. Kurth W (1994) Growth Grammar Interpreter GROGRA 2.4 -A software tool for the 3-dimensional interpretation of stochastic, sensitive growth grammars in the context of plant modelling - Introduction and Reference Manual, vol. 38 of Berichte des FZW. (Forschungszentrum Waldökosysteme der Universität Göttingen: Göttingen)
21. Kurth W (1999) 'Die Simulation der Baumarchitektur mit Wachstumsgrammatiken.' (Wissenschaftlicher Verlag: Berlin)
22. Kurth W, Anzola-Jürgenson GA (1997) Triebwachstum und Verzweigung junger Fichten in Abhängigkeit von den beiden Einflußgröß en Beschattung und Wuchsdichte: Datenaufbereitung und analyse mit GROGRA. In 'Deutscher Verband Forstlicher Forschungsanstalten, Sektion Forstliche Biometrie und Informatik, 10. Tagung Freiburg i. Br. 1997'. (pp. 89-108). (Biotechnische Fakultät: Ljubljana)
23. Měch R, Prusinkiewicz P (1996) Visual models of plants interacting with their environment. In 'Proceedings of SIGGRAPH'. pp. 397-410. (ACM: New York)
24. Pradal C, Dufour-Kowalski S (2007) OpenAlea - visual programming and component based software for plant modeling. In 'Proceedings of EuroPython, Vilnius, Lithuania'.
25. Pradal C, Dufour-Kowalski S, Boudon F, Fournier C, Godin C (2008) OpenAlea: a visual programming and component-based software platform for plant modeling. Functional Plant Biology 35, 751-760.
26. Preetham AJ, Shirley P, Smits B (1999) A practical model for daylight. In 'Proceedings of SIGGRAPH'. pp. 397-410. (ACM Press/Addison-Wesley Publishing: New York)
27. 2 fixation: a critical analysis of the methods used. Annals of Botany 41, 789-800.
28. Prusinkiewicz P, Lindenmayer A (1990) The algorithmic beauty of plants. (Springer-Verlag: Berlin)
29. Prusinkiewicz P, Hammel M, Hanan J, Měch R (1997) Visual models of plant development. In 'Handbook of formal languages, vol. 3.' (Eds G Rozenberg, A Salomaa) pp. 535-597. (Springer-Verlag: Berlin)
30. Smith C, Prusinkiewicz P, Samavati FF (2003) Local specification of surface subdivision algorithms. AGTIVE 2003, vol. 3062 of Lecture Notes in Computer Science, pp. 313-327. (Springer-Verlag: Berlin)
31. Steilmann M (1996) Morphologische Untersuchungen zur Modellierung des Wachstums in Abhängigkeit von den Licht- und Konkurrenzverhältnissen von Jungbuchen. Diploma Thesis, University of Göttingen.
32. Strobel J (2004) Die Atmung der verholzten Organe von Altbuchen (Fagus sylvativa L.) in einem Kalk- und einem Sauerhumusbuchenwald. PhD Thesis, University of Göttingen.
33. Taentzer G, Biermann E, Bisztray D, Bohnet B, Boneva I, et al. (2008) Generation of Sierpinski triangles: a case study for graph transformation tools. In 'Applications of graph transformation with industrial relevance - AGTIVE 2007'. (Eds A Schürr, M Nagel, A Zündorf) (Springer: Berlin)
34. Veach E (1998) Robust Monte Carlo Methods for Light Transport Simulation. PhD Thesis, Stanford University.