Halomicrobium katesii sp. nov., an extremely halophilic archaeon

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 10, 2008, Pages 2354-2358

  Kharroub, Karima ^a,b   Lizama, Catherine ^a,c   Aguilera, Margarita ^a   Boulahrouf, Abderrahmane ^b   Campos, Victoriano ^d   Ramos Cormenzana, Alberto ^a   Monteoliva Sánchez, Mercedes ^a  

^a Facultad de Farmacia   (Spain)

^b Universite Mentouri Constantine   (Algeria)

^c UNIVERSIDAD DE ANTOFAGASTA   (Chile)

^d PONTIFICIA UNIVERSIDAD CATÓLICA DE VALPARAÍSO   (Chile)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; BACITRACIN; CARBENICILLIN; CHLORAMPHENICOL; CYTOSINE; DNA; ERYTHROMYCIN; GENTAMICIN; GUANOSINE; KANAMYCIN; MAGNESIUM; NEOMYCIN; NOVOBIOCIN; PENICILLIN G; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLGLYCEROL PHOSPHATE; PHOSPHATIDYLGLYCEROSULFATE; POLYMYXIN B; STREPTOMYCIN; TETRACYCLINE; UNCLASSIFIED DRUG;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACILLUS (ROD SHAPED BACTERIUM); BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM COLONY; BACTERIUM ISOLATION; CHILE; DATA BASE; DNA CONTENT; DNA HYBRIDIZATION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; HALOMICROBIUM KATESII; HALOMICROBIUM MUKOHATAEI; HALOPHILIC ARCHAEON; LAKE; LIPID ANALYSIS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; STRAIN DIFFERENCE;

ALGERIA; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHILE; DNA, ARCHAEAL; FRESH WATER; GENES, ARCHAEAL; GENES, RRNA; GLYCOLIPIDS; HALOBACTERIACEAE; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; WATER MICROBIOLOGY;

ARCHAEA; HALOMICROBIUM; HALOMICROBIUM MUKOHATAEI; NEGIBACTERIA;

EID: 55849129224     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65662-0     Document Type: Article

References (44)

1. Arahal, D. R., Dewhirst, F. E., Paster, B. J., Volcani, B. E. & Ventosa, A. (1996). Phylogenetic analysis of some extremely halophilic archaea isolated from Dead Sea water, determined on the basis of their 16S rRNA sequences. Appl Environ Microbiol 62, 3779-3786.
2. Bardavid, R. E., Mana, L. & Oren, A. (2007). Haloplanus natans gen. nov., sp. nov., an extremely halophilic, gas-vacuolate archaeon isolated from Dead Sea-Red Sea water mixtures in experimental outdoor ponds. Int J Syst Evol Microbiol 57, 780-783.
3. Burns, D. G., Janssen, P. H., Itoh, T., Kamekura, M., Li, Z., Jensen, G., Rodriguez-Valera, F., Bolhuis, H. & Dyall-Smith, M. L. (2007). Haloquadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain. Int J Syst Evol Microbiol 57, 387-392.
4. Castillo, A. M., Gutiérrez, M. C., Kamekura, M., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2006a). Halovivax asiaticus gen. nov., sp. nov., a novel extremely halophilic archaeon isolated from Inner Mongolia, China. Int J Syst Evol Microbiol 56, 765-770.
5. Castillo, A. M., Gutiérrez, M. C., Kamekura, M., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2006b). Halostagnicola larsenii gen. nov., sp. nov., an extremely halophilic archaeon from a saline lake in Inner Mongolia, China. Int J Syst Evol Microbiol 56, 1519-1524.
6. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
7. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
8. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
9. González, C., Gutiérrez, C. & Ramirez, C. (1978). Halobacterium vallismortis sp. nov., an amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 24, 710-715.
10. AL emend. Larsen and Grant 1989, 2222. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 301-305. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer-Verlag.
11. AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 311-314. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer-Verlag.
12. Grant, W. D., Kamekura, M., McGenity, T. J. & Ventosa, A. (2001). Order I. Halobacteriales. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 294-334. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
13. Gruber, C., Legat, A., Ptaffenhuemer, M., Radax, C., Weidler, G., Busse, H.-J. & Stan-Lotter, H. (2004). Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarum. Extremophiles 8, 431-439.
14. Gutiérrez, C. & González, C. (1972). Methods for simultaneous detection of proteinase and esterase activities in extremely halophilic bacteria. Appl Microbiol 24, 516-517.
15. Gutiérrez, M. C., Castillo, A. M., Kamekura, M., Xue, Y., Ma, Y., Cowan, D. A., Jones, B. E., Grant, W. D. & Ventosa, A. (2007). Halopiger xanaduensis gen. nov., sp., nov., an extremely halophilic archaeon isolated from saline Lake Shangmatala in Inner Mongolia, China. Int J Syst Evol Microbiol 57, 1402-1407.
16. Hezayen, F. F., Tindall, B. J., Steinbüchel, A. & Rehm, B. H. A. (2002). Characterization of a novel halophilic archaeon, Halobiforma haloterrestris gen. nov., sp. nov., and transfer of Natronobacterium nitratireducens to Halobiforma nitratireducens comb. nov. Int J Syst Evol Microbiol 52, 2271-2280.
17. Ihara, K., Watanabe, S. & Tamura, T. (1997). Haloarcula argentinensis sp. nov. and Haloarcula mukohataei sp. nov., two new extremely halophilic archaea collected in Argentina. Int J Syst Bacteriol 47, 73-77.
18. Itoh, T., Yamaguchi, T., Zhou, P. & Takashina, T. (2005). Natronolimnobius baerhuensis gen. nov., sp. nov. and Natronolimnobius innermongolicus sp. nov., novel haloalkaliphilic archaea isolated from soda lakes in Inner Mongolia, China. Extremophiles 9, 111-116.
19. Kamekura, M. & Dyall-Smith, M. L. (1995). Taxonomy of the family Halobacteriaceae and the description of two new genera Halorubrobacterium and Natrialba. J Gen Appl Microbiol 41, 333-350.
20. Kamekura, M., Dyall-Smith, M. L., Upasani, V., Ventosa, A. & Kates, M. (1997). Diversity of alkaliphilic halobacteria: proposals for transfer of Natronobacterium vacuolatum, Natronobacterium magadii, and Natronobacterium pharaonis to Halorubrum, Natrialba, and Natronomonas gen. nov., respectively, as Halorubrum vacuolatum comb. nov., Natrialba magadii comb. nov., and Natronomonas pharaonis comb. nov., respectively. Int J Syst Bacteriol 47, 853-857.
21. Kates, M. (1972). Techniques of Lipidology. New York: Elsevier.
22. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA 3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
23. Lind, E. & Ursing, J. (1986). Clinical strains of Enterobacter agglomerans (synonyms: Erwinia herbicola, Erwinia milletiae) identified by DNA-DNA-hybridization. Acta Pathol Microbiol Immunol Scand [B] 94, 205-213.
24. Lizama, C., Monteoliva-Sanchez, M., Prado, B., Ramos-Cormenzana, A., Weckesser, J. & Campos, V. (2001). Taxonomic study of extreme halophilic archaea isolated from the "Salar de Atacama", Chile. Syst Appl Microbiol 24, 464-474.
25. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
26. McGenity, T. J. & Grant, W. D. (1995). Transfer of Halobacterium saccharovorum, Halobacterium sodomense, Halobacterium trapanicum NRC 34041 and Halobacterium lacusprofundi to the genus Halorubrum gen. nov., as Halorubrum saccharovorum comb. nov., Halorubrum sodomense comb. nov., Halorubrum trapanicum comb. nov. and Halorubrum lacusprofundi comb. nov. Syst Appl Microbiol 18, 237-243.
27. McGenity, T. J., Gemmell, R. T. & Grant, W. D. (1998). Proposal of a new halobacterial genus Natrinema gen. nov., with two species Natrinema pellirubrum nom. nov. and Natrinema pallidum nom. nov. Int J Syst Bacteriol 48, 1187-1196.
28. Montalvo-Rodriguez, R., Vreeland, R. H., Oren, A., Kessel, M., Betancourt, C. & López-Garriga, J. (1998). Halogeometricum borinquense gen. nov., sp. nov., a novel halophilic archaeon from Puerto Rico. Int J Syst Bacteriol 48, 1305-1312.
29. Oren, A., Gurevich, P., Gemmell, R. T. & Teske, A. (1995). Halobaculum gomorrense gen. nov., sp. nov., a novel extremely halophilic archaeon from the Dead Sea. Int J Syst Bacteriol 45, 747-754.
30. Oren, A., Ventosa, A. & Grant, W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238.
31. Oren, A., Elevi, R., Watanabe, S., Ihara, K. & Corcelli, A. (2002). Halomicrobium mukohataei gen. nov., comb. nov., and emended description of Halomicrobium mukohataei. Int J Syst Evol Microbiol 52, 1831-1835.
32. Saitou, N. & Nei, M. (1987). The neighbor-joining method; a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
33. Savage, K. N., Krumholz, L. R., Oren, A. & Elshahed, M. S. (2007). Haladaptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon isolated from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol 57, 19-24.
34. Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Microbiology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington DC: American Society for Microbiology.
35. Subov, N. N. (1931). Oceanographical Tables. Moscow: USSR Oceanographic Institute Hydrometeorological Commission.
36. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
37. Tindall, B. J., Ross, H. N. M. & Grant, W. D. (1984). Natronobacterium gen. nov. and Natronococcus gen. nov., two new genera of haloalkaliphilic archaebacteria. Syst Appl Microbiol 5, 41-57.
38. Torreblanca, M., Rodríguez-Valera, F., Juez, G., Ventosa, A., Kamekura, M. & Kates, M. (1986). Classification of non-alkaliphilic halobacteria based on numerical taxonomy and polar lipid composition, and description of Haloarcula gen. nov. and Haloferax gen. nov. Syst Appl Microbiol 8, 89-99.
39. Ventosa, A., Gutiérrez, M. C., Kamekura, M. & Dyall-Smith, M. L. (1999). Proposal to transfer Halococcus turkmenicus, Halobacterium trapanicum JCM 9743 and strain GSL-11 to Haloterrigena turkmenica gen. nov., comb. nov. Int J Syst Bacteriol 49, 131-136.
40. Vreeland, R. H., Straight, S., Krammes, J., Dougherty, K., Rosenzweig, W. D. & Kamekura, M. (2002). Halosimplex carlsbadense gen. nov., sp. nov., a unique halophilic archaeon, with three 16S rRNA genes, that grows only in defined medium with glycerol and acetate or pyruvate. Extremophiles 6, 445-452.
41. Waino, M., Tindall, B. J. & Ingvorsen, K. (2000). Halorhabdus utahensis gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea from Great Salt Lake, Utah. Int J Syst Evol Microbiol 50, 183-190.
42. Xu, Y., Zhou, P. & Tian, X. (1999). Characterization of two novel haloalkaliphilic archaea, Natronorubrum bangense gen. nov., sp. nov. and Natronorubrum tibetense gen. nov., sp. nov. Int J Syst Bacteriol 49, 261-266.
43. Xue, Y., Fan, H., Ventosa, A., Grant, W. D., Jones, B. E., Cowan, D. A. & Ma, Y. (2005). Halalkalicoccus tibetensis gen. nov., sp. nov., representing a novel genus of haloalkaliphilic archaea. Int J Syst Evol Microbiol 55, 2501-2505.
44. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.