-
1
-
-
13844253637
-
A Bayesian approach to reconstructing genetic regulatory networks with hidden factors
-
Beal,M. et al. (2005) A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. Bioinformatics, 21, 349-356.
-
(2005)
Bioinformatics
, vol.21
, pp. 349-356
-
-
Beal, M.1
-
2
-
-
0004055894
-
-
Cambridge University Press, Cambridge, UK
-
Boyd,S.P. et al. (2004) Convex Optimization. Cambridge University Press, Cambridge, UK.
-
(2004)
Convex Optimization
-
-
Boyd, S.P.1
-
4
-
-
3343020085
-
Integrative analysis of cell cycle control in budding yeast
-
Chen,K.C. et al. (2004) Integrative analysis of cell cycle control in budding yeast. Mol. Biol. Cell. 15, 3841-3862.
-
(2004)
Mol. Biol. Cell
, vol.15
, pp. 3841-3862
-
-
Chen, K.C.1
-
5
-
-
10044242838
-
Constructing biological pathway models with hybrid functional Petri nets
-
Doi,A. et al. (2004) Constructing biological pathway models with hybrid functional Petri nets. In Silico Biol., 4, 271-291.
-
(2004)
In Silico Biol
, vol.4
, pp. 271-291
-
-
Doi, A.1
-
6
-
-
33745213569
-
Simulation-based validation of the p53 transcriptional activity with hybrid functional Petri net
-
Doi,A. et al. (2006) Simulation-based validation of the p53 transcriptional activity with hybrid functional Petri net. In Silica Biol., 6, 1-13.
-
(2006)
In Silica Biol
, vol.6
, pp. 1-13
-
-
Doi, A.1
-
7
-
-
55749104647
-
A new regulatory interactions suggested by simulations for circadian genetic control mechanism in mammals
-
available at, Last accessed date, September 26, 2008
-
Fujii,Y. et al. (2004) A new regulatory interactions suggested by simulations for circadian genetic control mechanism in mammals, Genome Inform., available at http://www.jsbi.org/journal/GIW04/ GIW04P003.pdf. (Last accessed date, September 26, 2008)
-
(2004)
Genome Inform
-
-
Fujii, Y.1
-
8
-
-
0031294907
-
Monte Carlo filter using the genetic algorithm operators
-
Higuchi,T. (1997) Monte Carlo filter using the genetic algorithm operators. J. Stat. Comput. Simulation, 59, 1-23.
-
(1997)
J. Stat. Comput. Simulation
, vol.59
, pp. 1-23
-
-
Higuchi, T.1
-
9
-
-
41349101972
-
Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models
-
Hirose,O. et al. (2008) Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models. Bioinformatics, 23, 932-942.
-
(2008)
Bioinformatics
, vol.23
, pp. 932-942
-
-
Hirose, O.1
-
10
-
-
33746616957
-
Computational strategy for discovering druggable gene networks front genome-wide RNA expression profiles
-
Imoto,S. et al. (2006) Computational strategy for discovering druggable gene networks front genome-wide RNA expression profiles. Pac. Symp. Biocomput., 11, 559-571.
-
(2006)
Pac. Symp. Biocomput
, vol.11
, pp. 559-571
-
-
Imoto, S.1
-
11
-
-
0033534628
-
A molecular mechanism regulating rhythmic output from the suprachiasmatic cireadian clock
-
Jin,X. et al. (1999) A molecular mechanism regulating rhythmic output from the suprachiasmatic cireadian clock. Cell, 96, 57-68.
-
(1999)
Cell
, vol.96
, pp. 57-68
-
-
Jin, X.1
-
13
-
-
33747876155
-
A decompositional approach to parameter estimation in pathway modeling: A case study of the Akt and MAPK pathways and their crosstalk
-
Koh,G. et al. (2006) A decompositional approach to parameter estimation in pathway modeling: A case study of the Akt and MAPK pathways and their crosstalk. Bioinformatics, 22, e271-e280.
-
(2006)
Bioinformatics
, vol.22
-
-
Koh, G.1
-
14
-
-
0033648431
-
Hybrid Petri net representation of gene regulatory network
-
Matsuno,H. et al. (2000) Hybrid Petri net representation of gene regulatory network. Pac. Symp. Biocomput., 5, 341-352.
-
(2000)
Pac. Symp. Biocomput
, vol.5
, pp. 341-352
-
-
Matsuno, H.1
-
15
-
-
33645299531
-
A new regulatory interaction suggested by simulations for circadian genetic control mechanism in mammals
-
Matsuno,H. et al. (2006) A new regulatory interaction suggested by simulations for circadian genetic control mechanism in mammals. J. Bioinform. Computat. Biol., 4, 139-153.
-
(2006)
J. Bioinform. Computat. Biol
, vol.4
, pp. 139-153
-
-
Matsuno, H.1
-
16
-
-
14844307159
-
Inferring quantitative models of regulatory networks from expression data
-
Nachman,I. et al. (2004) Inferring quantitative models of regulatory networks from expression data. Bioinformatics, 20 i248-i256.
-
(2004)
Bioinformatics
, vol.20
-
-
Nachman, I.1
-
17
-
-
34447550826
-
Genomic data assiniflation for estimating hybrid functional Petri net from time-course gene expression data
-
Nagasaki,M. et al. (2006) Genomic data assiniflation for estimating hybrid functional Petri net from time-course gene expression data. Genome Inform., 17, 46-61.
-
(2006)
Genome Inform
, vol.17
, pp. 46-61
-
-
Nagasaki, M.1
-
18
-
-
36549060902
-
Inference of gene regulatory network using dynamic Bayesian networks
-
Perrin,B.E. et al. (2003) Inference of gene regulatory network using dynamic Bayesian networks. Bioinformatics, 19, ii386-ii349.
-
(2003)
Bioinformatics
, vol.19
-
-
Perrin, B.E.1
-
19
-
-
36549012683
-
Estimating parameters and hidden variables in non-linear state-space models based on ODEs for biological networks inference
-
Quach,M. et al. (2007) Estimating parameters and hidden variables in non-linear state-space models based on ODEs for biological networks inference. Bioinformatics, 23, 3209-3216.
-
(2007)
Bioinformatics
, vol.23
, pp. 3209-3216
-
-
Quach, M.1
-
20
-
-
3142744689
-
Modeling T-cell activation using gene expression profilling and state-space models
-
Rangel,C. et al. (2004) Modeling T-cell activation using gene expression profilling and state-space models. Bioinformatics, 20, 1361-1372.
-
(2004)
Bioinformatics
, vol.20
, pp. 1361-1372
-
-
Rangel, C.1
-
21
-
-
34249856850
-
Bayesian model-based inference of transcription factor activity
-
Rogers,S. et al. (2007) Bayesian model-based inference of transcription factor activity. BMC Bioinformatics, 8(Suppl 2):S2.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 2
-
-
Rogers, S.1
-
23
-
-
34250180183
-
Modeling and estimation of dynamic EGFR pathway by data assimilation approach using time series proteomic data
-
Tasaki,S. et al. (2006) Modeling and estimation of dynamic EGFR pathway by data assimilation approach using time series proteomic data. Genome Inform., 17, 226-238.
-
(2006)
Genome Inform
, vol.17
, pp. 226-238
-
-
Tasaki, S.1
-
24
-
-
0036682099
-
A transcription factor response element for gene expression during circadian night
-
Ueda, et al. (2002) A transcription factor response element for gene expression during circadian night. Nature, 418, 534-539.
-
(2002)
Nature
, vol.418
, pp. 534-539
-
-
Ueda1
-
25
-
-
0028241271
-
Mutagenesis and mapping of a mouse gene, clock, essential for circadian behavior
-
Vitaterna,M.H. et al. (1994) Mutagenesis and mapping of a mouse gene, clock, essential for circadian behavior. Science, 29, 719-725.
-
(1994)
Science
, vol.29
, pp. 719-725
-
-
Vitaterna, M.H.1
-
26
-
-
85032779470
-
Finding module-based gene networks in time-course gene expression data with state space models
-
Yamaguchi,R. et al. (2007) Finding module-based gene networks in time-course gene expression data with state space models. IEEE Signal Proces. Mag., 24, 37-46.
-
(2007)
IEEE Signal Proces. Mag
, vol.24
, pp. 37-46
-
-
Yamaguchi, R.1
-
27
-
-
33745508737
-
Estimating time-dependent gene networks from time series DNA microarray data by dynamic linear model with Markov switching
-
Yoshida,R. et al. (2005) Estimating time-dependent gene networks from time series DNA microarray data by dynamic linear model with Markov switching. Proc. IEEE Comput. Syst. Bioinform. Conf., 289-298.
-
(2005)
Proc. IEEE Comput. Syst. Bioinform. Conf
, pp. 289-298
-
-
Yoshida, R.1
|