Proteomics data collection - 3rd ProDaC Workshop: April 22 nd 2008, Toledo, Spain

Proteomics

Volumn 8, Issue 20, 2008, Pages 4163-4167

  Eisenacher, Martin ^a   Hardt, Tanja ^a   Martens, Lennart ^b   Häkkinen, Jari ^c   Apweiler, Rolf ^b   Hamacher, Michael ^a   Meyer, Helmut E ^a   Stephan, Christian ^a  

^a RUHR UNIVERSITY BOCHUM   (Germany)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^c LUND UNIVERSITY   (Sweden)

Author keywords

Bioinformatics; ProDaC; Standardization; Standards; Workflow

Indexed keywords

BIOINFORMATICS; COMPUTER PROGRAM; CONFERENCE PAPER; DATA ANALYSIS; DATA BASE; FUNCTIONAL PROTEOMICS; INFORMATION PROCESSING; INTERPERSONAL COMMUNICATION; PRIORITY JOURNAL; VALIDATION PROCESS;

COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; INTERNATIONAL COOPERATION; PROTEOMICS; SOFTWARE;

EID: 55749099295     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200800515     Document Type: Conference Paper

References (15)

1. Time for leadership. Nat. Biotechnol. 2007, 25, 821.
2. Martens, L., Orchard, S., Apweiler, R., Hermjakob, H., Human Proteome Organization Proteomics Standards Initiative: data standardization, a view on developments and policy. Mol. Cell. Proteomics 2007, 6, 1666-1667.
3. Hamacher, M., Stephan, C., Eisenacher, M., van Hall, A. et al., Proteomics for everyday use: activities of the HUPO Brain Proteome Project during the 5th HUPO World Congress. Proteomics 2007, 7, 1012-1015.
4. Eisenacher, M., Hardt, T., Hamacher, M., Martens, L. et al., Proteomics Data Collection - the 1st ProDaC workshop 26 April 2007 Ecole Normale Superieur, Lyon, France. Proteomics 2007, 7, 3034-3037.
5. Eisenacher, M., Hardt, T., Hamacher, M., Martens, L. et al., Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2008, Seoul, Korea. Proteomics 2008, 8, 1326-1330.
6. Martens, L., Hermjakob, H., Jones, P., Adamski, M. et al., PRIDE: the proteomics identifications database. Proteomics 2005, 5, 3537-3545.
7. Jones, P., Cote, R. G., Martens, L., Quinn, A. F. et al., PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res. 2006, 34, D659-D663.
8. Day-Richter, J., Harris, M. A., Haendel, M., Lewis, S., OBO-Edit-an ontology editor for biologists. Bioinformatics 2007, 23, 2198-2200.
9. Siepen, J. A., Swainston, N., Jones, A. R., Hart, S. R. et al., An informatic pipeline for the data capture and submission of quantitative proteomic data using iTRAQ. Proteome Sci. 2007, 5, 4.
10. Helsens, K., Martens, L., Vandekerckhove, J., Gevaert, K., MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results. Proteomics 2007, 7, 364-366.
11. Jones, P., Cote, R. G., Cho, S. Y., Klie, S. et al., PRIDE: new developments and new datasets. Nucleic Acids Res. 2008, 36, D878-D883.
12. Kasprzyk, A., Keefe, D., Smedley, D., London, D. et al., EnsMart: a generic system for fast and flexible access to biological data. Genome Res. 2004, 14, 160-169.
13. Vastrik, I., D'Eustachio, P., Schmidt, E., Joshi-Tope, G. et al., Reactome: a knowledge base of biologic pathways and processes. Genome Biol. 2007, 8, R39.
14. UniProt Consortium, The universal protein resource (UniProt). Nucleic Acids Res. 2008, 36, D190-D195.
15. Hermjakob, H., Apweiler, R., The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible. Expert Rev. Proteomics 2006, 3, 1-3.