Physiology of Streptococcus thermophilus during the late stage of milk fermentation with special regard to sulfur amino-acid metabolism

Proteomics

Volumn 8, Issue 20, 2008, Pages 4273-4286

  Herve Jimenez, Luciana ^a,c   Guillouard, Isabelle ^a   Guedon, Eric ^a   Gautier, Céline ^a   Boudebbouze, Samira ^a   Hols, Pascal ^b   Monnet, Véronique ^a   Rul, Françoise ^a   Maguin, Emmanuelle ^a  

^a CEMAGREF   (France)

^b UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

^c DANONE RESEARCH   (France)

Author keywords

Lactobacillus bulgaricus; Proteomic reference map; Protocooperation; Sugar metabolism; Sulfur amino acids

Indexed keywords

AMINO ACID TRANSPORTER; PEPTIDE; PROTEOME; SULFUR AMINO ACID;

AMINO ACID METABOLISM; ARTICLE; BACTERIAL GROWTH; BACTERIAL PHENOMENA AND FUNCTIONS; BIOSYNTHESIS; CYTOSOL; FERMENTATION; MILK; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; STREPTOCOCCUS THERMOPHILUS; TRANSCRIPTOMICS; UPREGULATION;

AMINO ACIDS, SULFUR; ANIMALS; BACTERIAL PROTEINS; COCULTURE TECHNIQUES; FERMENTATION; GENES, BACTERIAL; LACTOBACILLUS DELBRUECKII; MILK; NITROGEN; PROTEOME; STREPTOCOCCUS THERMOPHILUS; UP-REGULATION;

BACTERIA (MICROORGANISMS); LACTOBACILLUS; LACTOBACILLUS DELBRUECKII; LACTOBACILLUS DELBRUECKII SUBSP. BULGARICUS; STREPTOCOCCUS; STREPTOCOCCUS THERMOPHILUS;

EID: 55749098264     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700489     Document Type: Article

References (50)

1. Tamime, A. Y., Robinson, R. K., Yoghurt. Science and Technology. Woodhead publishing limited, Cambridge 1999.
2. Mitchell, T. J., The pathogenesis of streptococcal infections: from tooth decay to meningitis. Nat. Rev. Microbiol. 2003, 1, 219-230.
3. Bolotin, A., Quinquis, B., Renault, P., Sorokin, A. et al., Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus. Nat. Biotechnol. 2004, 22, 1554-1558.
4. Makarova, K., Slesarev, A., Wolf, Y., Sorokin, A. et al., Comparative genomics of the lactic acid bacteria. Proc. Natl. Acad. Sci. USA 2006, 103, 15611-15616.
5. Foucaud, C., Poolman, B., Lactose transport system of Streptococcus thermophilus. Functional reconstitution of the protein and characterization of the kinetic mechanism of transport. J. Biol. Chem. 1992, 267, 22087-22094.
6. Hutkins, R., Morris, H.A., McKay, L. L., Galactokinase activity in Streptococcus thermophilus. Appl. Environ. Microbiol. 1985, 50, 777-780.
7. Desmazeaud, M. J., Le lait milieu de culture. Microbiologie-Aliments- Nutrition 1990, 8, 313-325.
8. Hols, P., Hancy, F., Fontaine, L., Grossiord, B. et al., New insights in the molecular biology and physiology of Streptococcus thermophilus revealed by comparative genomics. FEMS Microbiol. Rev. 2005, 29, 435-463.
9. Shahbal, S., Hemme, D., Desmazeaud, M. J., High cell wall-associated proteinase acticity of some Streptococcus thermophilus strains (H-strains) correlated with a high acidification rate in milk. Lait 1991, 71, 351-357.
10. Letort, C., Nardi, M., Garault, P., Monnet, V. et al., Casein utilization by Streptococcus thermophilus results in a diauxic growth in milk. Appl. Environ. Microbiol. 2002, 68, 3162-3165.
11. Garault, P., Le Bars, D., Besset, C., Monnet, V., Three oligopeptide-binding proteins are involved in the oligopeptide transport of Streptococcus thermophilus. J. Biol. Chem. 2002, 277, 32-39.
12. Rul, F., Monnet, V., Presence of additional peptidases in Streptococcus thermophilus CNRZ 302 compared to Lactococcus lactis. J. Appl. Microbiol. 1997, 82, 695-704.
13. Garault, P., Letort, C., Juillard, V., Monnet, V., Branchedchain amino acid biosynthesis is essential for optimal growth of Streptococcus thermophilus in milk. Appl. Environ. Microbiol. 2000, 66, 5128-5133.
14. Salzano, A. M., Arena, S., Renzone, G., D'Ambrosio, C. et al., A widespread picture of the Streptococcus thermophilus proteome by cell lysate fractionation and gel-based/gel-free approaches. Proteomics 2007, 7, 1420-1433.
15. Perrin, C., Guimont, C., Bracquart, P., Gaillard, J. L., Expression of a new cold shock protein of 21.5 kDa and of the major cold shock protein by Streptococcus thermophilus after cold shock. Curr. Microbiol. 1999, 39, 342-0347.
16. Perrin, C., Gonzalez-Marquez, H., Gaillard, J. L., Bracquart, P. et al., Referencemap of soluble proteins from Streptococcus thermophilus by two-dimensional electrophoresis. Electrophoresis 2000, 21, 949-955.
17. Wouters, J. A., Rombouts, F. M., de Vos, W. M., Kuipers, O. P. et al., Cold shock proteins and low-temperature response of Streptococcus thermophilus CNRZ302. Appl. Environ. Microbiol. 1999, 65, 4436-4442.
18. Gonzalez-Marquez, H., Perrin, C., Bracquart, P., Guimont, C., A 16 kDa protein family overexpressed by Streptococcus thermophilus PB18 in acid environments. Microbiology 1997, 143, 1587-1594.
19. Auffray, Y., Lecesne, E., Hartke, A., Boutibonnes, P., Basic features of the Streptococcus thermophilus heat shock response. Curr. Microbiol. 1995, 30, 87-91.
20. Arena, S., D'Ambrosio, C., Renzone, G., Rullo, R. et al., A study of Streptococcus thermophilus proteome by integrated analytical procedures and differential expression investigations. Proteomics 2005, 6, 181-192.
21. Derzelle, S., Bolotin, A., Mistou, M. Y., Rul, F., Proteome analysis of Streptococcus thermophilus grown in milk reveals pyruvate formate-lyase as the major upregulated protein. Appl. Environ. Microbiol. 2005, 71, 8597-8605.
22. Letort, C., Juillard, V., Development of a minimal chemical defined medium for the exponential growth of Streptococcus thermophilus. J. Appl. Microbiol. 2001, 91, 1023-1029.
23. Guillot, A., Gitton, C., Anglade, P., Mistou, M. Y., Proteomic analysis of Lactococcus lactis, a lactic acid bacterium. Proteomics 2003, 3, 337-354.
24. Chich, J. F., David, O., Villers, F., Schaeffer, B. et al., Statistics for proteomics: Experimental design and 2-DE differential analysis. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci 2007, 849, 261-272.
25. Sperandio, B., Polard, P., Ehrlich, D. S., Renault, P. et al., Sulfur amino acid metabolism and its control in Lactococcus lactis IL1403. J. Bacteriol. 2005, 187, 3762-3778.
26. Delmar, P., Robin, S., Daudin, J. J., VarMixt: efficient variance modelling for the differential analysis of replicated gene expression data. Bioinformatics 2005, 21, 502-508.
27. Rozen, S., Skaletsky, H., Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132, 365-386.
28. Ibrahim, M., Guillot, A., Wessner, F., Algaron, F. et al., Control of the transcription of a short gene encoding a cyclic peptide in Streptococcus thermophilus: a new quorum-sensing system? J. Bacteriol. 2007, 189, 8844-8854.
29. Grunau, J. A., Swiader, J. M., Chromatography of 99 amino acids and other ninhydrin-reactive compounds in the Pickering lithium gradient system. J. Chromatogr. 1992, 594, 165-171.
30. Hiller, K., Schobert, M., Hundertmark, C., Jahn, D. et al., JVirGel: Calculation of virtual two-dimensional protein gels. Nucleic Acids Res. 2003, 31, 3862-3865.
31. Ikemura, T., Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol. 1985, 2, 13-34.
32. Sharp, P. M., Li, W. H., The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 1987, 15, 1281-295.
33. Schlothauer, T., Mogk, A., Dougan, D. A., Bukau, B. et al., MecA, an adaptor protein necessary for ClpC chaperone activity. Proc. Natl. Acad. Sci. USA 2003, 100, 2306-2311.
34. de Vin, F., Radstrom, P., Herman, L., De Vuyst, L., Molecular and biochemical analysis of the galactose phenotype of dairy Streptococcus thermophilus strains reveals four different fermentation profiles. Appl. Environ. Microbiol. 2005, 71, 3659-3667.
35. Redon, E., Loubiere, P., Cocaign-Bousquet, M., Transcriptome analysis of the progressive adaptation of Lactococcus lactis to carbon starvation. J. Bacteriol. 2005, 187, 3589-3592.
36. Raynaud, S., Perrin, R., Cocaign-Bousquet, M., Loubiere, P., Metabolic and transcriptomic adaptation of Lactococcus lactis subsp. lactis biovar diacetylactis in response to auto-acidification and temperature downshift in skim milk. Appl. Environ. Microbiol. 2005, 71, 8016-8023.
37. Melchiorsen, C. R., Jokumsen, K. V., Villadsen, J., Johnsen, M. G. et al., Synthesis and posttranslational regulation of pyruvate formate-lyase in Lactococcus lactis. J. Bacteriol. 2000, 182, 4783-4788.
38. Asanuma, N., Hino, T., Effects of pH and energy supply on activity and amount of pyruvate formate-lyase in Streptococcus bovis. Appl. Environ. Microbiol. 2000, 66, 3773-3777.
39. Sperandio, B., Gautier, C., McGovern, S., Ehrlich, D. S. et al., Control of methionine synthesis and uptake by MetR and homocysteine in Streptococcus mutans. J. Bacteriol. 2007, 189, 7032-7044.
40. Arioli, S., Monnet, C., Guglielmetti, S., Parini, C. et al., Aspartate biosynthesis is essential for the growth of Streptococcus thermophilus in milk, and aspartate availability modulates the level of urease activity. Appl. Environ. Microbiol. 2007, 73, 5789-5796.
41. O'Connell-Motherway, M., van Sinderen, D., Morel-Deville, F., Fitzgerald, G. F. et al., Six putative two-component regulatory systems isolated from Lactococcus lactis subsp. cremoris MG1363. Microbiology 2000, 146, 935-947.
42. Szurmant, H., Nelson, K., Kim, E. J., Perego, M. et al., YycH regulates the activity of the essential YycFG two-component system in Bacillus subtilis. J. Bacteriol. 2005, 187, 5419-5426.
43. Bisicchia, P., Noone, D., Lioliou, E., Howell, A. et al., The essential YycFG two-component system controls cell wall metabolism in Bacillus subtilis. Mol. Microbiol. 2007, 65, 180-200.
44. Dubrac, S., Boneca, I. G., Poupel, O., Msadek, T., New insights into the WalK/WalR (YycG/YycF) essential signal transduction pathway reveal a major role in controlling cell wall metabolism and biofilm formation in Staphylococcus aureus. J. Bacteriol. 2007, 189, 8257-8269.
45. Martin, P. K., Li, T., Sun, D., Biek, D. P. et al., Role in cell permeability of an essential two-component system in Staphylococcus aureus. J. Bacteriol. 1999, 181, 3666-3673.
46. Echenique, J. R., Trombe, M. C., Competence repression under oxygen limitation through the two-component MicAB signal-transducing system in Streptococcus pneumoniae and involvement of the PAS domain of MicB. J. Bacteriol. 2001, 183, 4599-4608.
47. Mohedano, M. L., Overweg, K., de la Fuente, A., Reuter, M. et al., Evidence that the essential response regulator YycF in Streptococcus pneumoniae modulates expression of fatty acid biosynthesis genes and alters membrane composition. J. Bacteriol. 2005, 187, 2357-2367.
48. Reva, O., Tummler, B., Think big-giant genes in bacteria. Environ. Microbiol. 2008, 10, 768-777.
49. Broadbent, J. R., McMahon, D. J., Welker, D. L., Oberg, C. J. et al., Biochemistry, genetics, and applications of exopolysaccharide production in Streptococcus thermophilus: a review. J. Dairy Sci. 2003, 86, 407-423.
50. Thibessard, A., Borges, F., Fernandez, A., Gintz, B. et al., Identification of Streptococcus thermophilus CNRZ368 genes involved in defense against superoxide stress. Appl. Environ. Microbiol. 2004, 70, 2220-2229.