Methanosarcina acetivorans 16S rRNA and transcription factor nucleotide fluctuation with implications in exobiology and pathology

Proceedings of SPIE - The International Society for Optical Engineering

Volumn 7097, Issue , 2008, Pages

  Holden, Todd ^a   Tremberger Jr , G ^a   Cheung, E ^a   Subramaniam, R ^a   Sullivan, R ^a   Schneider, P ^a   Flamholz, A ^a   Marchese, P ^a   Hiciano, O ^a   Yao, H ^a   Lieberman, D ^a   Cheung, T ^a  

^a QUEENSBOROUGH COMMUNITY COLLEGE   (United States)

Author keywords

Archaea; Fractal; Methanosarcina; Nucleotide sequence; Topoisomerase; Transcription factor sequence

Indexed keywords

ASTROBIOLOGY; BIOINFORMATICS; EARTH (PLANET); ESCHERICHIA COLI; FRACTALS; GENES; METHANE; METHANOGENS; MULTITASKING; NUCLEIC ACIDS; NUCLEOTIDES; ORGANIC ACIDS; PARTIAL DISCHARGES; PATHOLOGY; PROTEINS; SEDIMENTATION; TRANSCRIPTION; TRANSCRIPTION FACTORS; WATER POLLUTION;

16S RRNA; 16S RRNA GENES; ARCHAEA; CHEMICAL ENVIRONMENTS; CHEMICAL RESISTANTS; COLD CONDITIONS; COLD SHOCKS; COLD TEMPERATURES; COMPARATIVE STUDIES; DEINOCOCCUS RADIODURANS; DNA REPAIRS; DO-MAINS; E. COLI; ENVIRONMENTAL GRADIENTS; EXTRATERRESTRIAL ORIGINS; EXTREME CONDITIONS; GENE ACTIVITIES; METHANOGENESIS; METHANOSARCINA; METHANOSARCINA ACETIVORANS; METHICILLIN; NUCLEOTIDE PAIRS; NUCLEOTIDE SEQUENCE; RADIATION RESISTANTS; RESISTANT STRAINS; TATA BOXES; TOPOISOMERASE; TOPOISOMERASES; WEAK BONDINGS;

FRACTAL DIMENSION;

EID: 55649098619     PISSN: 0277786X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.794398     Document Type: Conference Paper

References (15)

1. Pollard KS, Salama SR, Lambert N, Coppens S, Pedersen JS, et al. "An RNA gene expressed during cortical development evolved rapidly in humans". Nature, 443, 167-172 (2006)
2. Pollard KS (2006 Nov) , Salama SR, King B, Kern AD, Dreszer T, et al. "Forces shaping the fastest evolving regions in the human genome", PLoS Genet 2(10): e168. DOI: 10. 1371/journal.pgen.0020168
3. Melissa M. Kendall, George D. Wardlaw, Chin F. Tang, Adam S. Bonin, Yitai Liu, and David L. Valentine, "Diversity of Archaea in Marine Sediments from Skan Bay, Alaska, Including Cultivated Methanogens, and Description of Methanogenium boonei sp. nov.", Applied & Environmental Microbiology, vol 73, p. 407-414, 2007
4. James E. Galagan, Chad Nusbaum, Alice Roy, Matthew G. Endrizzi, Pendexter Macdonald, Will FitzHugh, Sarah Calvo, Reinhard Engels, Serge Smirnov, Deven Atnoor, Adam Brown, Nicole Allen, Jerome Naylor, Nicole Stange-Thomann, Kurt DeArellano, Robin Johnson, Lauren Linton, Paul McEwan, Kevin McKernan, Jessica Talamas, Andrea Tirrell, Wenjuan Ye, Andrew Zimmer, Robert D. Barber, Isaac Cann, David E. Graham, David A. Grahame, Adam M. Guss, Reiner Hedderich, Cheryl Ingram-Smith, H. Craig Kuettner, Joseph A. Krzycki, John A. Leigh, Weixi Li, Jinfeng Liu, Biswarup Mukhopadhyay, John N. Reeve, Kerry Smith, Timothy A. Springer, Lowell A. Umayam, Owen White, Robert H. White, Everly Conway de Macario, James G. Ferry, Ken F. Jarrell, Hua Jing, Alberto J.L. Macario, Ian Paulsen, Matthew Pritchett, Kevin R. Sowers, Ronald V. Swanson, Steven H. Zinder, Eric Lander, William W. Metcalf, and Bruce Birren, "The Genome of M. acetivorans Reveals Extensive Metabolic and Physiological Diversity", Genome Res. Vol 12: 532-542, 2002
5. E. Bapteste, C. Brochier and Y. Boucher, "Higher-level classification of the Archaea: evolution of methanogenesis and methanogens" Archaea, vol 1, 353-363, 2005
6. Lee, Chang-Yong (2006), "Mass Fractal Dimension of the Ribosome and Implication of its Dynamic Characteristics", Physical Review E 73, 042901 (3 pages)
7. T. Higuchi, "Approach to an irregular time series on the basis of fractal theory", Physica D, vol 31, 277-283, (1988)
8. Todd Holden, R. Subramaniam, R. Sullivan, E. Cheung, C. Schneider, G. Tremberger, Jr., A. Flamholz, D. H. Lieberman, and T. D. Cheung, "ATCG nucleotide fluctuation of Deinococcus radiodurans radiation genes", Proc. SPIE 6694, 669417 (2007) (10 pages)
9. S. Olofsson, L. Marcusson, A. Stromback, D. Hughes and O. Cars "Dose-related selection of fluoroquinolone-resistant Escherichia coli" Journal of Antimicrobial Chemotherapy vol 60, 795-801 (2007)
10. Matthew T. G. Holden, Edward J. Feil, Jodi A. Lindsay, Sharon J. Peacock, Nicholas P. J. Day, Mark C. Enright, Tim J. Foster, Catrin E. Moore, Laurence Hurst, Rebecca Atkin, Andrew Barron, Nathalie Bason, Stephen D. Bentley, Carol Chillingworth, Tracey Chillingworth, Carol Churcher, Louise Clark, Craig Corton, Ann Cronin, Jon Doggett, Linda Dowd, Theresa Feltwell, Zahra Hance, Barbara Harris, Heidi Hauser, Simon Holroyd, Kay Jagels, Keith D. James, Nicola Lennard, Alexandra Line, Rebecca Mayes, Sharon Moule, Karen Mungall, Douglas Ormond, Michael A. Quail, Ester Rabbinowitsch, Kim Rutherford, Mandy Sanders, Sarah Sharp, Mark Simmonds, Kim Stevens, Sally Whitehead, Bart G. Barrell, Brian G. Spratt, and Julian Parkhill, "Complete genomes of two clinical Staphylococcus aureus strains: Evidence for the rapid evolution of virulence and drug resistance", PNAS, vol 101, 9786-9791 (2004).
11. G. Tremberger, Jr., T. Holden, E. Cheung, R. Subramaniam, R. Sullivan, C. Schneider, A. Flamholz, D. Lieberman, & T. Cheung, "Nucleotide fluctuation of RecA repair gene in Siberian Permafrost Psychrobacter cryohalolentis K5", SPIE Astrobiology Conference Proceedings, 7097-30, August 2008, 10 pages, invited, in press.
12. Kim brugger et al, "The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108°C", Archaea, vol 2, 127-135, 2007.
13. Zita Martinsa, Oliver Bottac, Marilyn L. Fogele, Mark A. Sephtonb, Daniel P. Glavinc, Jonathan S. Watsonf, Jason P. Dworkinc, Alan W. Schwartzg and Pascale Ehrenfreunda, "Extraterrestrial nucleobases in the Murchison meteorite", Earth and Planetary Science Letters, vol 270, 130-136, 2008.
14. Eric M. Morrow, Seung-Yun Yoo, Steven W. Flavell, Tae-Kyung Kim, Yingxi Lin, Robert Sean Hill, Nahit M. Mukaddes, Soher Balkhy, Generoso Gascon, Asif Hashmi, Samira Al-Saad, Janice Ware, Robert M. Joseph, Rachel Greenblatt, Danielle Gleason, Julia A. Ertelt, Kira A. Apse, Adria Bodell, Jennifer N. Partlow, Brenda Barry, Hui Yao, Kyriacos Markianos, Russell J. Ferland, Michael E. Greenberg, Christopher A. Walsh1, "Identifying Autism Loci and Genes by Tracing Recent Shared Ancestry", Science, vol321, 218-223, 2008.
15. I.N. Reid, W.B. Sparks, S. Lubow, M. McGrath, M. Livio, J. Valenti1, K.R. Sowers1, H.D. Shukla, S. MacAuley, T. Miller, R. Suvanasuthi1, R. Belas, A. Colman, F.T. Robb, P. DasSarma, J.A. Muller, J.A. Coker, R. Cavicchioli, F. Chen and S. DasSarma, "Terrestrial models for extraterrestrial life : methanogens and halophiles at Martian temperatures", International Journal of Astrobiology, vol 1, 1-9, 2006. doi:10.1017/S1473550406002916.