-
2
-
-
0036401627
-
Bayesian hierarchical model for identifying changes in gene expression form microarray experiments
-
Broët, P., Richardson, S., and Radvanyi, F. Bayesian hierarchical model for identifying changes in gene expression form microarray experiments. Journal of Computational Biology, 9:671-683, 2002.
-
(2002)
Journal of Computational Biology
, vol.9
, pp. 671-683
-
-
Broët, P.1
Richardson, S.2
Radvanyi, F.3
-
3
-
-
8844236882
-
A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments
-
Broët, P., Lewin, A., Richardson, S., Dalmasso, C., and Magdelenat, H. A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments. Bioinformatics, 20:2562-2571, 2004.
-
(2004)
Bioinformatics
, vol.20
, pp. 2562-2571
-
-
Broët, P.1
Lewin, A.2
Richardson, S.3
Dalmasso, C.4
Magdelenat, H.5
-
4
-
-
0000020288
-
Data sharpening as a prelude to density estimation
-
Choi, E. and Hall, P. Data sharpening as a prelude to density estimation. Biometrika, 86(4):941-947, 1999.
-
(1999)
Biometrika
, vol.86
, Issue.4
, pp. 941-947
-
-
Choi, E.1
Hall, P.2
-
5
-
-
0002629270
-
Maximum likelihood from incomplete data via the EM algorithm
-
Dempster, A., Laird, N., and Rubin, D. Maximum likelihood from incomplete data via the EM algorithm. Journal of the Royal Statistical Society, Series B, 39:1-38, 1977.
-
(1977)
Journal of the Royal Statistical Society, Series B
, vol.39
, pp. 1-38
-
-
Dempster, A.1
Laird, N.2
Rubin, D.3
-
6
-
-
18444401138
-
A bayesian mixture model for differential gene expression
-
Do, K.-A., Müller, P., and Tang, F. A bayesian mixture model for differential gene expression. Journal of the Royal Statistical Society: Series C (Applied Statistics), 54:627-644, 2005.
-
(2005)
Journal of the Royal Statistical Society: Series C (Applied Statistics)
, vol.54
, pp. 627-644
-
-
Do, K.-A.1
Müller, P.2
Tang, F.3
-
8
-
-
0036489046
-
Comparison of discrimination methods for the classification of tumors using gene expression data
-
Dudoit, S., Fridly, J., and Speed, T. Comparison of discrimination methods for the classification of tumors using gene expression data. Journal of the American Statistical Association, 97(457):77-87, 2002.
-
(2002)
Journal of the American Statistical Association
, vol.97
, Issue.457
, pp. 77-87
-
-
Dudoit, S.1
Fridly, J.2
Speed, T.3
-
9
-
-
2142732441
-
Large-scale simultaneous hypothesis testing: The choice of a null hypothesis
-
Efron, B. Large-scale simultaneous hypothesis testing: The choice of a null hypothesis. Journal of the American Statistical Association, 99:96-104, 2004.
-
(2004)
Journal of the American Statistical Association
, vol.99
, pp. 96-104
-
-
Efron, B.1
-
10
-
-
1542784653
-
Empirical bayes analysis of a microarray experiment
-
Efron, B., Tibshirani, R., Storey, J. D., and Tusher, V. Empirical bayes analysis of a microarray experiment. Journal of the American Statistical Association, 96 (456):1151-1160, 2001.
-
(2001)
Journal of the American Statistical Association
, vol.96
, Issue.456
, pp. 1151-1160
-
-
Efron, B.1
Tibshirani, R.2
Storey, J.D.3
Tusher, V.4
-
11
-
-
22844453564
-
MCLUST: Software for model-based clustering and discriminant analysis
-
Fraley, C. and Raftery, A. E. MCLUST: Software for model-based clustering and discriminant analysis. Journal of Classification, 16:297-306, 1999.
-
(1999)
Journal of Classification
, vol.16
, pp. 297-306
-
-
Fraley, C.1
Raftery, A.E.2
-
12
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
October
-
Golub, T. R., Slonim, D. K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J. P., Coller, H., Loh, M. L., Downing, J. R., Caligiuri, M. A., Bloomfield, C. D., and Lander, E. S. Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science, 286(15):531-537, October 1999.
-
(1999)
Science
, vol.286
, Issue.15
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
13
-
-
10244276949
-
A spline function approach for detecting differentially expressed genes in microarray data analysis
-
He, W. A spline function approach for detecting differentially expressed genes in microarray data analysis. Bioinformatics, 20(17):2954-2963, 2004.
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 2954-2963
-
-
He, W.1
-
14
-
-
0346888587
-
On parametric empirical bayes methods for comparing multiple groups using replicated gene expression profiles
-
Kendziorski, C., Newton, M., Lan, H., and Gould, M. N. On parametric empirical bayes methods for comparing multiple groups using replicated gene expression profiles. Statistics in Medicine, 22:3899-3914, 2003.
-
(2003)
Statistics in Medicine
, vol.22
, pp. 3899-3914
-
-
Kendziorski, C.1
Newton, M.2
Lan, H.3
Gould, M.N.4
-
16
-
-
0034730124
-
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cdna hybridizations
-
Lee, M.-L.T., Kuo, F.C., Whitmore, G.A., and Sklar, J. Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cdna hybridizations. Proceedings of the National Academy of Sciences, 97:9834-9839, 2000.
-
(2000)
Proceedings of the National Academy of Sciences
, vol.97
, pp. 9834-9839
-
-
Lee, M.-L.T.1
Kuo, F.C.2
Whitmore, G.A.3
Sklar, J.4
-
17
-
-
0035997115
-
Models for microarray gene expression data
-
Lee, M.-L.T., Lu, W., Whitmore, G.A., and Beier, D. Models for microarray gene expression data. Journal of Biopharmaceutical Statistics, 12:1-19, 2002.
-
(2002)
Journal of Biopharmaceutical Statistics
, vol.12
, pp. 1-19
-
-
Lee, M.-L.T.1
Lu, W.2
Whitmore, G.A.3
Beier, D.4
-
18
-
-
33847325857
-
Flexible empirical bayes models for differential gene expression
-
Lo, K. and Gottardo, R. Flexible empirical bayes models for differential gene expression. Bioinformatics, 23:328-335, 2007.
-
(2007)
Bioinformatics
, vol.23
, pp. 328-335
-
-
Lo, K.1
Gottardo, R.2
-
19
-
-
15044352042
-
-
Wiley, Hoboken, N.J
-
McLachlan, G.J., Do, K.-A., and Ambroise, C. Analyzing Microarray Gene Expression Data. Wiley, Hoboken, N.J., 2004.
-
(2004)
Analyzing Microarray Gene Expression Data
-
-
McLachlan, G.J.1
Do, K.-A.2
Ambroise, C.3
-
20
-
-
33745606461
-
A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays
-
McLachlan, G.J., Bean, R.W., and Jones, L.B.-T. A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays. Bioinformatics, 22:1608-1615, 2006.
-
(2006)
Bioinformatics
, vol.22
, pp. 1608-1615
-
-
McLachlan, G.J.1
Bean, R.W.2
Jones, L.B.-T.3
-
21
-
-
84948872101
-
A study of the comparability of external criteria for hierarchical cluster analysis
-
Milligan, G.W. and Cooper, M. C. A study of the comparability of external criteria for hierarchical cluster analysis. Multivariate Behavioral Research, 21:441-458, 1986.
-
(1986)
Multivariate Behavioral Research
, vol.21
, pp. 441-458
-
-
Milligan, G.W.1
Cooper, M.C.2
-
22
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression change from microarray data
-
Newton, M. A., Kendziorski, C. M., Richmond, C. S., Blattner, F. R., and Tsui, K. W. On differential variability of expression ratios: Improving statistical inference about gene expression change from microarray data. Journal of Computational Biology, 8:37-52, 2001.
-
(2001)
Journal of Computational Biology
, vol.8
, pp. 37-52
-
-
Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
Blattner, F.R.4
Tsui, K.W.5
-
23
-
-
0035999977
-
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
-
Pan, W. A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics, 18(4):546-554, 2002.
-
(2002)
Bioinformatics
, vol.18
, Issue.4
, pp. 546-554
-
-
Pan, W.1
-
24
-
-
21444454257
-
False discovery rates, sensitivity, and sample size calculation for microarray studies
-
Pawitan, Y., Michiels, S., Koscielny, S., Gusnanto, A., and Ploner, A. False discovery rates, sensitivity, and sample size calculation for microarray studies. Bioinformatics, 21:3017-3024, 2005.
-
(2005)
Bioinformatics
, vol.21
, pp. 3017-3024
-
-
Pawitan, Y.1
Michiels, S.2
Koscielny, S.3
Gusnanto, A.4
Ploner, A.5
-
25
-
-
25444497013
-
Separation index and partial membership for clustering
-
Qiu, W.-L. and Joe, H. Separation index and partial membership for clustering. Computational Statistics & Data Analysis, 50:585-603, 2006.
-
(2006)
Computational Statistics & Data Analysis
, vol.50
, pp. 585-603
-
-
Qiu, W.-L.1
Joe, H.2
-
26
-
-
0003747605
-
-
John Wiley and Sons, Inc
-
Titterington, D. M., Smith, A.F.M., and Makov, U.E. Statistical Analysis of Finite Mixture Distributions. John Wiley and Sons, Inc., 1995.
-
(1995)
Statistical Analysis of Finite Mixture Distributions
-
-
Titterington, D.M.1
Smith, A.F.M.2
Makov, U.E.3
-
27
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher, V.G., Tibshirani, R., and Chu, G. Significance analysis of microarrays applied to the ionizing radiation response. Proceedings of the National Academy of Sciences of the United States of America, 98:5116-5121, 2001.
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
28
-
-
34548255908
-
Clues: A non-parametric clustering method based on local shrinking
-
Wang, S., Qiu, W.-L., and Zamar, R. H. Clues: A non-parametric clustering method based on local shrinking. Computational Statistics & Data Analysis, 52:286-298, 2007.
-
(2007)
Computational Statistics & Data Analysis
, vol.52
, pp. 286-298
-
-
Wang, S.1
Qiu, W.-L.2
Zamar, R.H.3
-
29
-
-
0034782618
-
Model-based clustering and data transformations for gene expression data
-
Yeung, K.Y., Fraley, C., Murua, A., Raftery, A.E., and Ruzzo, W.L. Model-based clustering and data transformations for gene expression data. Bioinformatics, 17:977-987, 2001.
-
(2001)
Bioinformatics
, vol.17
, pp. 977-987
-
-
Yeung, K.Y.1
Fraley, C.2
Murua, A.3
Raftery, A.E.4
Ruzzo, W.L.5
|