DNA microarray comparisons of plant factor- and nitrogen deprivation-induced hormogonia reveal decision-making transcriptional regulation patterns in Nostoc punctiforme

Journal of Bacteriology

Volumn 190, Issue 22, 2008, Pages 7382-7391

  Campbell, Elsie L ^a   Christman, Harry ^a   Meeks, John C ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GROWTH FACTOR; HORMOGONIUM INDUCING FACTOR; NITROGEN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL FLAGELLUM; BACTERIAL GROWTH; CONTROLLED STUDY; DNA MICROARRAY; GENE EXPRESSION; HORMOGONIA; NONHUMAN; NOSTOC; NOSTOC PUNCTIFORME; PRIORITY JOURNAL; TRANSCRIPTION REGULATION; VEGETATIVE GROWTH;

BACTERIAL PROTEINS; BLOTTING, NORTHERN; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; MODELS, BIOLOGICAL; NITROGEN; NOSTOC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLANTS; SYMBIOSIS; TRANSCRIPTION, GENETIC;

CYANOBACTERIA; NOSTOC PUNCTIFORME;

EID: 55549090692     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00990-08     Document Type: Article

References (32)

1. Adams, D. G. 2000. Symbiotic interactions, p. 523-561. In B. A. Whitton and M. Potts (ed.), The ecology of cyanobacteria, their diversity in time and space. Kluwer Academic Publishers, Dordrecht, The Netherlands.
2. Allen, M. B., and D. I. Arnon. 1955. Studies on nitrogen-fixing blue-green algae. I. Growth and nitrogen fixation by Anabaena cylindrica Lemm. Plant Physiol. 30:366-372.
3. Armstrong, R. E., P. K. Hayes, and A. E. Walsby. 1983. Gas vacuole formation in hormogonia of Nostoc muscorum. J. Gen. Microbiol. 128:263-270.
4. Bergman, B. 2002. The Nostoc-Gunnera symbiosis, p. 207-232. In A. Rai, B. Bergman, and U. Rasmussen (ed.), Cyanobacteria in symbiosis. Kluwer Academic Publishers, Dordrecht, The Netherlands.
5. Campbell, E. L., and J. C. Meeks. 1989. Characteristics of hormogonia formation by symbiotic Nostoc spp. in response to the presence of Anthoceros punctatus or its extracellular products. Appl. Environ. Microbiol. 55:125-131.
6. Campbell, E. L., M. L. Summers, H. Christman, M. E. Martin, and J. C. Meeks. 2007. Global gene expression patterns of Nostoc punctiforme in steady-state dinitrogen-grown heterocyst-containing cultures and at single time points during the differentiation of akinetes and hormogonia. J. Bacteriol. 189:5247-5256.
7. Campbell, E. L., F. C. Y. Wong, and J. C. Meeks. 2003. DNA binding properties of the HrmR protein of Nostoc punctiforme responsible for transcriptional regulation of genes involved in differentiation of hormogonia. Mol. Microbiol. 47:573-582.
8. Cohen, M. F., and J. C. Meeks. 1997. A hormogonium regulating locus, hrmUA, of the cyanobacterium Nostoc punctiforme strain ATCC 29133 and its response to an extract of a symbiotic plant partner Anthoceros punctatus. Mol. Plant-Microbe Interact. 10:280-289.
9. Damerval, T., G. Guglielmi, J. Houmard, and N. Tandeau de Marsac. 1991. Hormogonium differentiation in the cyanobacterium Calothrix: a photoregulated developmental process. Plant Cell 3:191-201.
10. Douglas, D., A. Peat, B. A. Whitton, and P. Wood. 1987. Influence of iron status on structure of the cyanobacterium (blue-green alga) Calothrix parientina. Cytobiosis 47:155-165.
11. Duggan, P. S., P. Gottardello, and D. G. Adams. 2007. Molecular analysis of genes in Nostoc punctiforme involved in pilus biogenesis and plant infection. J. Bacteriol. 198:4547-4551.
12. Enderlin, C. S., and J. C. Meeks. 1983. Pure culture and reconstitution of the Anthoceros-Nostoc symbiotic association. Planta 158:157-165.
13. Gyaneshwar, P., O. Paliy, J. McAuliffe, D. L. Popham, M. I. Jordan, and S. Kustu. 2005. Sulfur and nitrogen limitation in Escherichia coli K-12: specific homeostatic responses. J. Bacteriol. 187:1074-1090.
14. Herdmann, M., M. Janvier, R. Rippka, and R. Y. Stanier. 1979. Genome size in cyanobacteria. J. Gen. Microbiol. 111:73-85.
15. Herdmann, M., and R. Rippka. 1988. Cellular differentiation: hormogonia and baeocytes. Methods Enzymol. 167:232-242.
16. Hernandez-Muniz, W., and S. E. Stevens, Jr. 1987. Characteristics of the motile hormogonia of Mastigocladus laminosus. J. Bacteriol. 169:218-223.
17. Hoiczyk, E., and W. Baumeister. 1998. The junctional pore complex, a prokaryotic secretion organelle, is the molecular motor underlying gliding motility in cyanobacteria. Curr. Biol. 8:1161-1168.
18. Klint, J., L. Ran, U. Rasmussen, and B. Bergman. 2006. Identification of developmentally regulated proteins in cyanobacterial hormogonia using a proteomic approach. Symbiosis 41:87-95.
19. Meeks, J. C. 1998. Symbiosis between nitrogen-fixing cyanobacteria and plants. BioScience 48:266-276.
20. Meeks, J. C., E. L. Campbell, M. L. Summers, and F. C. Wong. 2002. Cellular differentiation in the cyanobacterium Nostoc punctiforme. Arch. Microbiol. 178:395-403.
21. Meeks, J. C., and J. Elhai. 2002. Regulation of cellular differentiation in filamentous cyanobacteria in free-living and plant-associated symbiotic growth states. Microbiol. Mol. Biol. Rev. 66:94-121.
22. Meeks, J. C., J. Elhai, T. Thiel, M. Potts, F. Larimer, J. Lamerdin, P. Predki, and R. Atlas. 2001. An overview of the genome of Nostoc punctiforme, a multicellular, symbiotic cyanobacterium. Photosyn. Res. 70:85-106.
23. Rippka, R., J. Deruelles, J. B. Waterbury, M. Herdmann, and R. Y. Stanier. 1979. Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J. Gen. Microbial. 111:1-61.
24. Rippka, R., and M. Herdman. 1992. Pasteur culture collection of cyanobacteria in axenic culture. Institute Pasteur, Paris, France.
25. Robinson, B. L., and J. H. Miller. 1970. Photomorphogenesis in the bluegreen alga Nostoc commune 584. Physiol. Plant 23:461-472.
26. Smyth, G. K. 2005. Limma: linear models for microarray data, p. 397-420. In R. Gentleman, V. Carry, S. Dudoit, R. Irizarry, and W. Huber (ed.), Bioinformatics and computational biology solutions using R and Bioconductor. Springer, New York, NY.
27. Sturn, A., J. Quackenbush, and Z. Trajanoski. 2002. Genesis: cluster analysis of microarray data. Bioinformatics 18:207-208.
28. Summers, M. L., J. G. Wallis, E. L. Campbell, and J. C. Meeks. 1995. Genetic evidence of a major role for glucose-6-phosphate dehydrogenase in nitrogen fixation and dark growth of the cyanobacterium Nostoc sp. strain ATCC 29133. J. Bacteriol. 177:6184-6194.
29. Tandeau de Marsac, N. 1994. Differentiation of hormogonia and relationships with other biological processes, p. 825-842. In D. A. Bryant (ed.), The molecular biology of cyanobacteria. Kluwer Academic Publishers, Boston, MA.
30. Valladares, A., A. Herrero, D. Pils, G. Schmetterer, and E. Flores. 2003. Cytochrome c oxidase genes required for nitrogenase activity and diazotrophic growth in Anabaena sp. PCC 7120. Mol. Microbiol. 47:1239-1249.
31. Wolk, C. P., A. Ernst, and J. Elhai. 1994. Heterocyst metabolism and development, p. 769-823. In D. A. Bryant (ed.), The molecular biology of cyanobacteria. Kluwer Academic Publishers, Boston, MA.
32. Wood, P., A. Peat, and B. A. Whitton. 1986. Influence of phosphorus status on fine structure of the cyanobacterium (blue-green alga) Calothrix parientina. Cytobiosis 47:89-99.