Birdsong "transcriptomics": Neurochemical specializations of the oscine song system

PLoS ONE

Volumn 3, Issue 10, 2008, Pages

  Lovell, Peter V ^a   Clayton, David F ^b   Replogle, Kirstin L ^b   Mello, Claudio V ^a  

^a OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BONE MORPHOGENETIC PROTEIN; CADHERIN; CATENIN; CHOLINERGIC RECEPTOR; NEUROPEPTIDE; NEUROPEPTIDE RECEPTOR; NEUROPILIN; PLEXIN; POTASSIUM CHANNEL; PROTEIN P53; RGS PROTEIN; SEMAPHORIN; SEROTONIN RECEPTOR; TRANSFORMING GROWTH FACTOR BETA;

ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; BRAIN NERVE CELL; CELL DEATH; CELL DIFFERENTIATION; CELL JUNCTION; CELL MIGRATION; CELL PROLIFERATION; CONTROLLED STUDY; FINCH; FOCAL ADHESION; FUNCTIONAL GENOMICS; GENE EXPRESSION REGULATION; HIGH VOCAL CENTER; LEARNING; MALE; NERVE CELL EXCITABILITY; NERVE CELL PLASTICITY; NEUROCHEMISTRY; NONHUMAN; NUCLEOTIDE SEQUENCE; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION; TRANSCRIPTOMICS; VOCALIZATION; AGE; ANIMAL; BIOLOGY; BRAIN; CYTOLOGY; GENETICS; GENOMICS; METHODOLOGY; NERVE CELL; PHYSIOLOGY; SONGBIRD;

PASSERI; TAENIOPYGIA GUTTATA; VERTEBRATA;

AGE FACTORS; ANIMALS; BRAIN; COMPUTATIONAL BIOLOGY; GENE EXPRESSION REGULATION; GENOMICS; NEURONS; SONGBIRDS; VOCALIZATION, ANIMAL;

EID: 55349099196     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0003440     Document Type: Article

References (64)

1. Rho JY, Wada-Kiyama Y, Onishi Y, Kiyama R, Sakuma Y (2004) Expressional regulation of neuronal and cancer-related genes by estrogen in adult female rats. Endocr Res 30: 257-267.
2. Torres-Munoz JE, Van Waveren C, Keegan MG, Bookman RJ, Petito CK (2004) Gene expression profiles in microdissected neurons from human hippocampal subregions. Brain Res Mol Brain Res 127: 105-114.
3. Lomax MI, Huang L, Cho Y, Gong TL, Altschuler RA (2000) Differential display and gene arrays to examine auditory plasticity. Hear Res 147: 293-302.
4. Takita J, Ishii M, Tsutsumi S, Tanaka Y, Kato K, et al. (2004) Gene expression profiling and identification of novel prognostic marker genes in neuroblastoma. Genes Chromosomes Cancer 40: 120-132.
5. Malyala A, Pattee P, Nagalla SR, Kelly MJ, Ronnekleiv OK (2004) Suppression subtractive hybridization and microarray identification of estrogen-regulated hypothalamic genes. Neurochem Res 29: 1189-1200.
6. Dabrowski M, Aerts S, Van Hummelen P, Craessaerts K, De Moor B, et al. (2003) Gene profiling of hippocampal nenronal culture. J Neurochem 85: 1279-1288.
7. Grozinger CM, Sharabash NM, Whitfield CW, Robinson GE (2003) Pheromone-mediated gene expression in the honey bee brain. Proc Natl Acad Sci U S A 100 Suppl 2: 14519-14525.
8. Whitfield CW, Cziko AM, Robinson GE (2003) Gene expression profiles in the brain predict behavior in individual honey bees. Science 302: 296-299.
9. Renn SC, Aubin-Horth N, Hofmann HA (2004) Biologically meaningful expressions profiling across species using heterologous hybridization to a cDNA microarray. BMC Genomics 5: 42.
10. Hofmann HA (2003) Functional genomics of neural and behavioral plasticity. J Neurobiol 54: 272-282.
11. Wilbrecht L, Nottebohm F (2003) Vocal learning in birds and humans. Ment Retard Dev Disabil Res Rev 9: 135-148.
12. Doupe AJ, Kuhl PK (1999) Birdsong and human speech: common themes and mechanisms. Annu Rev Neurosci 22: 567-631.
13. Zeigler HP, Marler P (2004) In Behavioral Neurobiology of Birdsong 1016.
14. Brenowitz EA (1997) Comparative approaches to the avian song system. J Neurobiol 33: 517-531.
15. Jarvis ED, Gunturkun O, Bruce L, Csillag A, Karten H, et al. (2005) Avian brains and a new understanding of vertebrate brain evolution. Nat Rev Neurosci 6: 151-159.
16. Reiner A. Perkel DJ, Mello CV, Jarvis ED (2004) Songbirds and the revised avian brain nomenclature. Ann N Y Acad Sci 1016: 77-108.
17. Brenowitz EA, Nalls B, Wingfield JC, Kroodsma DE (1991) Seasonal changes in avian song nuclei without seasonal changes in song repertoire. Journal of Neuroscience 11: 1367-1374.
18. Alvarez-Buylla A, Kirn JR (1997) Birth, migration, incorporation, and death of vocal control neurons in adult songbirds. J Neurobiol 33: 585-601.
19. Alvarez-Buylla A, Ling CY, Nottebohm F (1992) High vocal center growth and its relation to neurogenesis, neuronal replacement and song acquisition in juvenile canaries. Journal of Neurobiology 23: 396-406.
20. Mello CV, Vates GE, Okuhata S, Nottebohm F (1998) Descending auditory pathways in the adult male zebra finch (Taeniopygia guttata). J Comp Neurol 395: 137-160.
21. Jarvis ED, Nottebohm F (1997) Motor-driven gene expression. Proc Natl Acad Sci U S A 94: 4097-4102.
22. Mello CV, Clayton DF (1994) Song-induced ZENK gene expression in auditory pathways of songbird brain and its relation to the song control system. J Neurosci 14: 6652-6666.
23. Replogle KL, Arnold AP, Ball GF, Band M, Bensch S, et al. (2008) The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution. BMC Genomics 9: 131.
24. Denisenko-Nehrbass NI, Jarvis E, Scharff C, Nottebohm F, Mello CV (2000) Site-specific retinoic acid production in the brain of adult songbirds. Neuron 27: 359-370.
25. Li X, Wang XJ, Tannenhauser J, Podell S, Mukherjee P, et al. (2007) Genomic resources for songbird research and their use in characterizing gene expression during brain development. Proc Natl Acad Sci U S A 104: 6834-6839.
26. Velho TA, Lovell P, Mello CV (2007) Enriched expression and developmental regulation of the middle-weight neurofilament (NF-M) gene in song control nuclei of the zebra finch. J Comp Neurol 500: 477-497.
27. Agate RJ, Perlman WR, Arnold AP (2002) Cloning and expression of zebra finch (Taeniopygia guttata) steroidogenic factor 1: overlap with hypothalamic but not with telencephalic aromatase. Biol Reprod 66: 1127-1133.
28. Holzenberger M, Jarvis ED, Chong C, Grossman M, Nottebohm F, et al. (1997) Selective expression of insulin-like growth factor II in the songbird brain. J Neurosci 17: 6974-6987.
29. Wood WE, Olson CR, Lovell PV, Mello CV (2008) Dietary retinoic acid affects song maturation and gene expression in the song system of the zebra finch. Dev Neurobiol 68: 1213-1224.
30. Wild JM, Williams MN, Howie GJ, Mooney R (2005) Calcium-binding proteins define interneurons in HVC of the zebra finch (Taeniopygia guttata). J Comp Neurol 483: 76-90.
31. Shen P, Campagnoni CW, Kampf K, Schlinger BA, Arnold AP, et al. (1994) Isolation and characterization of a zebra finch aromatase cDNA: in situ hybridization reveals high aromatase expression in brain. Brain Res Mol Brain Res 24: 227-237.
32. Shen P, Schlinger BA, Campagnoni AT, Arnold AP (1995) An atlas of aromatase mRNA expression in the zebra finch brain. J Comp Neurol 360: 172-184.
33. Wada K, Sakaguchi H, Jarvis ED, Hagiwara M (2004) Differential expression of glutamate receptors in avian neural pathways for learned vocalization. J Comp Neurol 476: 44-64.
34. George JM, Clayton DF (1992) Differential regulation in the avian song control circuit of an mRNA predicting a highly conserved protein related to protein kinase C and the bcr oncogene. Molecular Brain Research 12: 323-329.
35. George JM, Jin H, Woods WS, Clayton DF (1995) Characterization of a novel protein regulated during the critical period for song learning in the zebra finch. Neuron 15: 361-372.
36. Wada K, Howard JT, McConnell P, Whitney O, Lints T, et al. (2006) A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. Proc Natl Acad Sci U S A 103: 15212-15217.
37. Dutar P, Vu HM, Perkel DJ (1998) Multiple cell types distinguished by physiological, pharmacological, and anatomic properties in nucleus HVc of the adult zebra finch. J Neurophysiol 80: 1828-1838.
38. Lombardo F, Komatsu D, Hadjiargyrou M (2004) Molecular cloning and characterization of Mustang, a novel nuclear protein expressed during skeletal development and regeneration. Faseb J 18: 52-61.
39. Wilbrecht L, Williams H, Gangadhar N, Nottebohm F (2006) High levels of new neuron addition persist when the sensitive period for song learning is experimentally prolonged. J Neurosci 26: 9135-9141.
40. Alvarez-Buylla A, Nottebohm F (1988) Migration of young neurons in adult avian brain. Nature 335: 353-354.
41. Kirn JR, Alvarez-Buylla A, Nottebohm F (1991) Production and survival of protection neurons in a forebrain vocal center of adult male canaries. Journal of Neuroscience 11: 1756-1762.
42. de Wit J, Verhaagen J (2003) Role of semaphorins in the adult nervous system. Prog Neurobiol 71: 249-267.
43. Tran TS, Kolodkin AL, Bharadwaj R (2007) Semaphorin regulation of cellular morphology. Annu Rev Cell Dev Biol 23: 263-292.
44. Li R, Sakaguchi H (1997) Cholinergic innervation of the song control nuclei by the ventral paleostriatum in the zebra finch: a double-labeling study with retrograde fluorescent tracers and choline acetyltransferase immunohistochemistry. Brain Res 763: 239-246.
45. Ryan SM, Arnold AP (1981) Evidence for cholinergic participation in the control of bird song; acetylcholinesterase distribution and muscarinic receptor autoradiography in the zebra finch brain. Journal of Comparative Neurology 202: 211-219.
46. Shea SD, Margoliash D (2003) Basal forebrain cholinergic modulation of auditory activity in the zebra finch song system. Neuron 40: 1213-1226.
47. Watson JT, Adkins-Regan E, Whiting P, Lindstrom JM, Podleski TR (1988) Autoradiographic localization of nicotinic acetylcholine receptors in the brain of the zebra finch (Poephila guttata). J Comp Neurol 274; 255-264.
48. Weiser M, Bueno E, Sekirnjak C, Martone ME, Baker H, et al. (1995) The potassium channel subunit KV3.1b is localized to somatic and axonal membranes of specific populations of CNS neurons. J Neurosci 15: 4298-4314.
49. Weiser M, Vega-Saenz de Miera E, Kentros C, Moreno H, Franzen L, et al. (1994) Differential expression of Shaw-related K+ channels in the rat central nervous system. J Neurosci 14: 949-972.
50. Grissmer S, Nguyen AN, Aiyar J, Hanson DC, Mather RJ, et al. (1994) Pharmacological characterization of five cloned voltage-gated K+ channels, types Kv1.1, 1.2, 1.3, 1.5, and 3.1, stably expressed in mammalian cell lines. Mol Pharmacol 45: 1227-1234.
51. Massengill JL, Smith MA, Son DI, O'Dowd DK (1997) Differential expression of K4-AP currents and Kv3.1 potassium channel transcripts in cortical neurons that develop distinct firing phenotypes. J Neurosci 17: 3136-3147.
52. Saghatelyan A, de Chevigny A, Schachner M, Lledo PM (2004) Tenascin-R mediates activity-dependent recruitment of neuroblasts in the adult mouse forebrain. Nat Neurosci 7: 347-356.
53. Rousselot P, Nouebohm F (1995) Expression of polysialylated N-CAM in the central nervous system of adult canaries and its possible relation to function. Journal of Comparative Neurology 356: 629-640.
54. Rousselot P, Lois C, Alvarez-Buylla A (1995) Embryonic (PSA) N-CAM reveals chains of migrating neuroblasts between the lateral ventricle and the olfactory bulb of adult mice. Journal of Comparative Neurology 351: 51-81.
55. Jarvis ED, Schiwabl H, Ribeiro S, Mello CV (1997) Brain gene regulation by territorial singing behavior in freely ranging songbirds. Neuroreport 8: 2073-2077.
56. Mello CV, Vicario DS, Clayton DL (1992) Song presentation induces gene expression in the songbird forebrain. Proc Natl Acad Sci U S A 89: 6818-6822.
57. Stripling R, Kruse AA, Clayton DF (2001) Development of song responses in the zebra finch caudomedial neostriatum: role of genomic and electrophysiological activities. J Neurobiol 48: 163-180.
58. Duffy DL, Bentley GE, Ball GF (1999) Does sex or photoperiodic condition influence ZENK induction in response to song in European starlings? Brain Res 844: 78-82.
59. Bailey DJ, Rosebush JC, Wade J (2002) The hippocampus and caudomedial neostriatum show selective responsiveness to conspecific song in the female zebra finch. J Neurobiol 52: 43-51.
60. Vates GE, Broome BM, Mello CV, Nottebohm F (1996) Auditory pathways of caudal telencephalon and their relation to the song system of adult male zebra finches. J Comp Neurol 366: 613-642.
61. Kersey PJ, Duarte J, Williams A, Karavidopoulou Y, Birney E, et al. (2004) The Internationtal Protein Index: an integrated database for proteomics experiments. Proteomics 4: 1985-1988.
62. Kerr MK, Martin M, Churchill GA (2000) Analysis of variance for gene expression microarray data. J Comput Biol 7: 819-837.
63. Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, Hamadeh H, et al. (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J Comput Biol 8: 625-637.
64. Mello CV, Jarvis ED, Denisenko N, Rivas M (1997) Isolation of song-regulated genes in the brain of songbirds. Methods Mol Biol 85: 205-217.