Genetic mapping and transcription analyses of resistance gene loci in potato using NBS profiling

Theoretical and Applied Genetics

Volumn 117, Issue 8, 2008, Pages 1379-1388

  Brugmans, Bart ^a,b   Wouters, Doret ^a   Van Os, Hans ^a   Hutten, Ronald ^a   Van Der Linden, Gerard ^a   Visser, Richard G F ^a   Van Eck, Herman J ^a   Van Der Vossen, Edwin A G ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b Easygene   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMAL MAPPING; FRUITS; HISTOLOGY; NUCLEIC ACIDS; PHOTOLITHOGRAPHY; RNA;

AFLP MARKERS; CANDIDATE GENES; CHROMOSOMAL REGIONS; GENE CLUSTERS; GENE LOCUS; GENE TRANSCRIPTIONS; GENETIC MAPPINGS; GENETIC MAPS; MAPPING POPULATIONS; POWERFUL TOOLS; RESISTANCE GENE ANALOGS; RESISTANCE GENES;

TRANSCRIPTION;

PLANT DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CHROMOSOME MAP; DNA SEQUENCE; GENE EXPRESSION PROFILING; GENETIC MARKER; GENETIC TRANSCRIPTION; GENETICS; INNATE IMMUNITY; METHODOLOGY; MULTIGENE FAMILY; PLANT DISEASE; PLANT GENE; PLANT GENOME; POTATO;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; CHROMOSOME MAPPING; DNA, PLANT; GENE EXPRESSION PROFILING; GENES, PLANT; GENETIC MARKERS; GENOME, PLANT; IMMUNITY, INNATE; MULTIGENE FAMILY; PLANT DISEASES; SEQUENCE ANALYSIS, DNA; SOLANUM TUBEROSUM; TRANSCRIPTION, GENETIC;

LYCOPERSICON ESCULENTUM; SOLANUM TUBEROSUM;

EID: 55249092665     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-008-0871-7     Document Type: Article

References (36)

1. S Altschul T Madden A Schäffer J Zhang Z Zhang W Miller D Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
2. E Bakker U Achenbach J Bakker J van Vliet J Peleman B Segers S van der Heijden P van der Linden R Graveland R Hutten H van Eck E Coppoolse E van der Vossen J Bakker A Goverse 2004 A high-resolution map of the H1 locus harbouring resistance to the potato cyst nematode Globodera rostochiensis Theor Appl Genet 109 146 152
3. B Brugmans A Fernandez del Carmen CWB Bachem H van Os HJ van Eck RGF Visser 2002 A novel method for the construction of genome wide transcriptome maps Plant J 31 211 222
4. B Brugmans RGB Hutten NO Rookmaker RGF Visser HJ van Eck 2006 Exploitation of a marker dense linkage map of potato for positional cloning of a wart disease resistance gene Theor Appl Genet 112 269 77
5. F Calenge CG van der Linden E van de Weg HJ Schouten G van Arkel C Denancé CE Durel 2005 Resistance gene analogues identified through the NBS profiling method map close to major genes and QTL for disease resistance in apple Theor Appl Genet 110 660 668
6. H Flor 1971 Current status of the gene-for-gene concept Annu Rev Phytopathol 9 275 296
7. TM Fulton J Chunwongse SD Tanksley 1995 Microprep protocol for extraction of DNA from tomato and other herbaceous plants Plant Mol Biol Rep 13 207 209
8. C Gebhardt JPT Valkonen 2001 Organization of genes controlling disease resistance in the potato genome Annu Rev Phytopathol 39 79 102
9. SA Goff D Ricke TH Lan G Presting R Wang M Dunn J Glazebrook A Sessions P Oeller H Varma D Hadley D Hutchison C Martin F Katagiri BM Lange T Moughamer Y Xia P Budworth J Zhong T Miguel U Paszkowski S Zhang M Colbert WL Sun L Chen B Cooper S Park TC Wood L Mao P Quail R Wing R Dean Y Yu A Zharkikh R Shen S Sahasrabudhe A Thomas R Cannings A Gutin D Pruss J Reid S Tavtigian J Mitchell G Eldredge T Scholl RM Miller S Bhatbagar N Adey T Rubano N Tusneem R Robinson J Feldhaus T Macalma A Oliphant S Briggs 2002 A draft sequence of the rice genome (Oryza sativa L. ssp. Japonica) Science 296 92 100
10. RC Grube ER Radwanski M Jahn 2000 Comparative genetics of disease resistance within the solanaceae Genetics 155 873 887
11. AJ Hayes MA Saghai Maroof 2000 Targeted resistance gene mapping in soybean using modified AFLPs Theor Appl Genet 100 1279 1283
12. S Huang VGAA Vleeshouwers JS Werij RCB Hutten HJ van Eck RGF Visser E Jacobsen 2004 The R3 Resistance to phytophthora infestans in potato is conferred by two closely linked R genes with distinct specificities Plant Microbe Interact 17 428 435
13. S Hunger G Di Gaspero S Möhring D Bellin R Schafer-Pregel DC Borchardt C Durel M Werber B Weisshaar F Salamini K Schneider 2002 Isolation and linkage analysis of expressed disease-resistance gen analogues of sugar beet (Beta vulgaris L.) Genome 46 70 82
14. E Isidore H Van Os S Andrzejewski J Bakker I Barrena GJ Bryan J Buntjer B Caromel HJ Van Eck B Ghareeb W De Jong P Van Koert V Lefebvre D Milbourne E Ritter JNAM Rouppe van der Voort F Rousselle-Bourgeois J Van Vliet R Waugh 2003 Toward a marker-dense meiotic map of the potato genome: lessons from linkage group I Genetics 165 4 2107 2116
15. V Kanazin LF Marek RC Shoemaker 1996 Resistance gene analogs are conserved and clustered in soybean Proc Natl Acad Sci USA 93 11746 11750
16. NT Keen 1990 Gene-for-gene complementarity in plant-pathogen interactions Annu Rev Genet 24 447 463
17. DN Kuhn M Heath RJ Wisser A Meerow JS Brown U Lopes RJ Schnell 2003 Resistance gene homologues in Theobroma cacao as useful genetic markers Theor Appl Genet 107 191 202
18. D Leister A Ballvora F Salamini C Gebhardt 1996 A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants Nat Genet 14 421 429
19. D Leister J Kurth DA Laurie M Yano T Sasaki K Devos A Graner P Schulze-Lefert 1998 Rapid reorganization of resistance gene homologues in cereal genomes Proc Natl Acad Sci USA 95 370 375
20. GB Martin AJ Bogdanove G Sessa 2003 Understanding the function of plant disease resistance proteins Annu Rev Plant Biol 54 23 61
21. BC Meyers M Morgante RW Michelmore 2002 TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes Plant J 32 77 92
22. BC Meyers A Kozik A Griego H Kuang RW Michelmore 2003 Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis Plant Cell 15 809 834
23. SB Milligan J Bodeau J Yaghoobi I Kaloshian P Zabel VM Williamson 1998 The root knot nematode resistance gene Mi from tomato is a member of the leucine zipper, nucleotide binding, leucine-rich repeat family of plant genes Plant Cell 10 1307 1319
24. G Nombela V Williamson M Muniz 2003 The root-knot nematode resistance gene Mi-1.2 of tomato is responsible for resistance against the whitefly Bremisia tabaci MPMI 16 645 649
25. Q Pan Y Liu O Budai-Hadrian M Sela L Carmal-Goren D Zamir R Fluhr 2000 Comparative genetics of nucleotide binding site-leucine rich repeat resistance gene homologues in the genomes of two dicotyledons: tomato and Arabidopsis Genetics 155 309 322
26. CM Ronnings SS Stegalkina RA Ascenzi O Bougri AL Hart TR Utterbach SE Vanaken SB Riedmuller JA White J Cho GM Pertea Y Lee S Karamycheva R Sultana J Tsai J Quackenbush HM Griffiths S Restrepo CD Smart WE Fry R van der Hoeven S Tanksley P Zhang H Jin ML Yamamoto BJ Baker CR Buell 2003 Comparative analyses of potato expressed sequence tag libraries Plant Physiol 131 419 429
27. M Rossi FL Goggin SB Milligan I Kaloshian DE Ullman VM Williamson 1998 The nematode resistance gene Mi of tomato confers resistance against the potato aphid Proc Natl Acad Sci USA 95 9750 9754
28. J Rouppe van der Voort P Wolters R Folkertsma R Hutten P Van Zandvoort H Vinke K Kanyuka A Bendahmane E Jacobsen R Janssen J Bakker 1997 Mapping of the cyst nematode resistance locus Gpa2 in potato using a strategy based on comigrating AFLP markers Theor Appl Genet 95 874 880
29. KA Shen BC Meyers MN Islam/Faridi DB Chin DM Stelly RW Mitchelmore 1998 Resistance gene candidates identified by PCR with degenerate oligonucleotide primers map to clusters of resistance genes in lettuce Mol Plant Microbe Interact 11 815 823
30. The Arabidopsis Genome Initiative (TAGI) 2000 Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Nature 6814 796 815
31. G van der Linden D Wouters V Mihalka E Kochieva M Smulders B Vosman 2004 Efficient targeting of plant disease resistance loci using NBS profiling Theor Appl Genet 109 384 393
32. E van der Vossen J van der Voort K Kanyuka A Bendahmane H Sandbrink D Baulcombe J Bakker W Stiekema R Klein-Lankhorst 2000 Homologues of a single resistance-gene cluster in potato confers resistance to distinct pathogens: a virus and a nematode Plant J 23 567 576
33. H van Oss S Andrzejewski E Bakker I Barrena G Bryan B Caromal B Ghareeb E Isidore W de Jong P van Koert V Lefebre D Milbourne E Ritter J Rouppe van der Voort F Rousselle-Bourgeois J van Vliet R Waugh J Visser H van Eck 2006 Construction of a 10, 000-marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and a genomewide physical map Genetics 173 1075 1087
34. TJ Vision DG Brown DB Shmoys RT Durrett SD Tanksley 1999 Selective mapping: a strategy for optimizing the construction of high-density linkage maps Genetics 155 407 420
35. P Vos G Simons T Jesse J Wijbrandi L Heinen R Hogers A Frijters J Groenendijk P Diergaarde M Reijans J Fierens-Onstenk M de Both J Peleman T Liharska J Hontelez M Zabeau 1998 The tomato Mi-1 gene confers resistance to both root-knot nematodes and potato aphids Nat Biotechnol 16 1365 1369
36. YG Yu Buss GR Saghai MA Maroof 1996 Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site Proc Natl Acad Sci USA 93 11751 11756