-
1
-
-
0024357889
-
Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway
-
Abril, M. A., C. Michán, K. N. Timmis, and J. L. Ramos. 1989. Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. J. Bacteriol. 171:6782-6790.
-
(1989)
J. Bacteriol
, vol.171
, pp. 6782-6790
-
-
Abril, M.A.1
Michán, C.2
Timmis, K.N.3
Ramos, J.L.4
-
2
-
-
34248152648
-
Crystal structures of multidrug binding proteins TtgR in complex with antibiotics and plant antimicrobials
-
Alguel, Y., C. Cuixang, W. Terán, T. Krell, J. L. Ramos, M. T. Gallegos, and X. Zhang. 2007. Crystal structures of multidrug binding proteins TtgR in complex with antibiotics and plant antimicrobials. J. Mol. Biol. 369:829-840.
-
(2007)
J. Mol. Biol
, vol.369
, pp. 829-840
-
-
Alguel, Y.1
Cuixang, C.2
Terán, W.3
Krell, T.4
Ramos, J.L.5
Gallegos, M.T.6
Zhang, X.7
-
3
-
-
0032738032
-
Cloning and sequence analysis of two Pseudomonas flavoprotein xenobiotic reductases
-
Blehert, D. S., B. G. Fox, and G. H. Chambliss. 1999. Cloning and sequence analysis of two Pseudomonas flavoprotein xenobiotic reductases. J. Bacteriol. 181:6254-6263.
-
(1999)
J. Bacteriol
, vol.181
, pp. 6254-6263
-
-
Blehert, D.S.1
Fox, B.G.2
Chambliss, G.H.3
-
4
-
-
32944459987
-
Comparative characterization and expression analysis of the four Old Yellow Enzyme homologues from Shewanella oneidensis indicate differences in physiological function
-
Brigé, A., D. van den Hemel, W. Carpentier, L. de Smet, and J. J. van Beeumen. 2006. Comparative characterization and expression analysis of the four Old Yellow Enzyme homologues from Shewanella oneidensis indicate differences in physiological function. Biochem. J. 394:335-344.
-
(2006)
Biochem. J
, vol.394
, pp. 335-344
-
-
Brigé, A.1
van den Hemel, D.2
Carpentier, W.3
de Smet, L.4
van Beeumen, J.J.5
-
5
-
-
0032484145
-
On the active site of Old Yellow Enzyme
-
Brown, B. J., Z. Deng, A. Karplus, and V. Massey. 1998. On the active site of Old Yellow Enzyme. J. Biol. Chem. 273:32753-32762.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 32753-32762
-
-
Brown, B.J.1
Deng, Z.2
Karplus, A.3
Massey, V.4
-
6
-
-
11144257842
-
Assimilation of nitrogen from nitrite and trinitrotoluene in Pseudomonas putida JLR11
-
Caballero, A., A. Esteve-Nuñez, G. J. Zylstra, and J. L. Ramos. 2005. Assimilation of nitrogen from nitrite and trinitrotoluene in Pseudomonas putida JLR11. J. Bacteriol. 187:396-399.
-
(2005)
J. Bacteriol
, vol.187
, pp. 396-399
-
-
Caballero, A.1
Esteve-Nuñez, A.2
Zylstra, G.J.3
Ramos, J.L.4
-
7
-
-
20444364023
-
PnrA, a new nitroreductase-family enzyme in the TNT-degrading strain Pseudomonas putida JLR11
-
Caballero, A., J. J. Lázaro, J. L. Ramos, and A. Esteve-Nuñez. 2005. PnrA, a new nitroreductase-family enzyme in the TNT-degrading strain Pseudomonas putida JLR11. Environ. Microbiol. 7:1211-1219.
-
(2005)
Environ. Microbiol
, vol.7
, pp. 1211-1219
-
-
Caballero, A.1
Lázaro, J.J.2
Ramos, J.L.3
Esteve-Nuñez, A.4
-
8
-
-
33745146504
-
A double mutant of Pseudomonas putida JLR11 deficient in the synthesis of the nitroreductase PnrA and assimilatory nitrite reductase NasB is impaired for growth on 2,4,6-trinitrotoluene (TNT)
-
Caballero, A., and J. L. Ramos. 2006. A double mutant of Pseudomonas putida JLR11 deficient in the synthesis of the nitroreductase PnrA and assimilatory nitrite reductase NasB is impaired for growth on 2,4,6-trinitrotoluene (TNT). Environ. Microbiol. 8:1306-1310.
-
(2006)
Environ. Microbiol
, vol.8
, pp. 1306-1310
-
-
Caballero, A.1
Ramos, J.L.2
-
9
-
-
0032401716
-
Metabolism of 2,4,6-trinitrotoluene by Pseudomonas sp
-
Esteve-Nuñez, A., and J. L. Ramos. 1998. Metabolism of 2,4,6-trinitrotoluene by Pseudomonas sp. JLR11. Environ. Sci. Technol. 32:3802-3808.
-
(1998)
JLR11. Environ. Sci. Technol
, vol.32
, pp. 3802-3808
-
-
Esteve-Nuñez, A.1
Ramos, J.L.2
-
10
-
-
0038820069
-
Characterization of YgjM, an Old Yellow Enzyme homolog from Bacillus subtilis involved in the oxidative stress response
-
Fitzpatrick, T. B., N. Amrhein, and P. Macheroux. 2003. Characterization of YgjM, an Old Yellow Enzyme homolog from Bacillus subtilis involved in the oxidative stress response. J. Biol. Chem. 278:19891-19897.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 19891-19897
-
-
Fitzpatrick, T.B.1
Amrhein, N.2
Macheroux, P.3
-
11
-
-
3142529274
-
Structural and functional impairment of an Old Yellow Enzyme homologue upon affinity tag incorporation
-
Fitzpatrick, T. B., S. Auweter, K Kitzing, T. Clausen, N. Amrhein, and P. Macheroux. 2004. Structural and functional impairment of an Old Yellow Enzyme homologue upon affinity tag incorporation. Protein Expr. Purif. 36:280-291.
-
(2004)
Protein Expr. Purif
, vol.36
, pp. 280-291
-
-
Fitzpatrick, T.B.1
Auweter, S.2
Kitzing, K.3
Clausen, T.4
Amrhein, N.5
Macheroux, P.6
-
12
-
-
0033515586
-
The flavin environment in Old Yellow Enzyme
-
Fox, K. M., and P. A. Karplus. 1999. The flavin environment in Old Yellow Enzyme. J. Biol. Chem. 274:9357-9362.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 9357-9362
-
-
Fox, K.M.1
Karplus, P.A.2
-
13
-
-
0031948118
-
Aerobic degradation of 2,4,6-trinitrotoluene by Enterobacter cloacae PB2 and by pentaerythritol tetranitrate reductase
-
French, C. E., S. Nicklin, and N. C. Bruce. 1998. Aerobic degradation of 2,4,6-trinitrotoluene by Enterobacter cloacae PB2 and by pentaerythritol tetranitrate reductase. Appl. Environ. Microbiol. 64:2864-2868.
-
(1998)
Appl. Environ. Microbiol
, vol.64
, pp. 2864-2868
-
-
French, C.E.1
Nicklin, S.2
Bruce, N.C.3
-
14
-
-
34248590170
-
Escherichia coli has multiple enzymes that attack TNT and release nitrogen for growth
-
González-Pérez, M. M., P. van Dillewijn, R.-M. Wittich, and J. L. Ramos. 2007. Escherichia coli has multiple enzymes that attack TNT and release nitrogen for growth. Environ. Microbiol. 9:1535-1540.
-
(2007)
Environ. Microbiol
, vol.9
, pp. 1535-1540
-
-
González-Pérez, M.M.1
van Dillewijn, P.2
Wittich, R.-M.3
Ramos, J.L.4
-
15
-
-
33745879474
-
Xenobiotic reductase A in degradation of quinoline by Pseudomonas putida 86: Physiological function, structure and mechanism of 8-hydroxycoumarin reduction
-
Griese, J. J., R. P. Jakob, S. Schwarzinger, and H. Dobbek. 2006. Xenobiotic reductase A in degradation of quinoline by Pseudomonas putida 86: physiological function, structure and mechanism of 8-hydroxycoumarin reduction. J. Mol. Biol. 361:140-152.
-
(2006)
J. Mol. Biol
, vol.361
, pp. 140-152
-
-
Griese, J.J.1
Jakob, R.P.2
Schwarzinger, S.3
Dobbek, H.4
-
16
-
-
20144382425
-
The multidrug efflux regulator TtgV recognizes a wide range of structurally different effectors in solution and complexed with target DNA: Evidence from isothermal titration calorimetry
-
Guazzaroni, M. E., T. Krell, A. Felipe, R. Ruíz, C. Meng, X. Zhang, M. T. Gallegos, and J. L. Ramos. 2005. The multidrug efflux regulator TtgV recognizes a wide range of structurally different effectors in solution and complexed with target DNA: evidence from isothermal titration calorimetry. J. Biol. Chem. 280:20887-20893.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 20887-20893
-
-
Guazzaroni, M.E.1
Krell, T.2
Felipe, A.3
Ruíz, R.4
Meng, C.5
Zhang, X.6
Gallegos, M.T.7
Ramos, J.L.8
-
17
-
-
0030200713
-
Identification of products resulting from the biological reduction of 2,4,6-trinitrotoluene, 2,4-dinitrotoluene, and 2,6-dinitrotoluene by Pseudomonas sp
-
Haïdour, A., and J. L. Ramos. 1996. Identification of products resulting from the biological reduction of 2,4,6-trinitrotoluene, 2,4-dinitrotoluene, and 2,6-dinitrotoluene by Pseudomonas sp. Environ. Sci. Technol. 30:2365-2370.
-
(1996)
Environ. Sci. Technol
, vol.30
, pp. 2365-2370
-
-
Haïdour, A.1
Ramos, J.L.2
-
18
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Higgins, D., J. Thompson, T. Gibson, J. D. Thompson, D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Higgins, D.1
Thompson, J.2
Gibson, T.3
Thompson, J.D.4
Higgins, D.G.5
Gibson, T.J.6
-
19
-
-
35148863240
-
Gene duplication and the adaptive evolution of a classic genetic switch
-
Hittinger, C. T., and S. B. Carroll. 2007. Gene duplication and the adaptive evolution of a classic genetic switch. Nature 449:677-681.
-
(2007)
Nature
, vol.449
, pp. 677-681
-
-
Hittinger, C.T.1
Carroll, S.B.2
-
20
-
-
0032519573
-
Bamberger rearrangement during TNT metabolism by Clostridium acetobutylicum
-
Hughes, J. B., C. Wang, K. Yesland, A. Richardson, R. Bhadra, G. Bennet, and F. Rudolph. 1998. Bamberger rearrangement during TNT metabolism by Clostridium acetobutylicum. Environ. Sci. Technol. 32:494-500.
-
(1998)
Environ. Sci. Technol
, vol.32
, pp. 494-500
-
-
Hughes, J.B.1
Wang, C.2
Yesland, K.3
Richardson, A.4
Bhadra, R.5
Bennet, G.6
Rudolph, F.7
-
21
-
-
23044455760
-
The 1.3 Å crystal structure of the flavoprotein YqjM reveals a novel class of Old Yellow Enzyme
-
Kitzing, K., T. B. Fitzpatrick, C. Wilken, J. Sawa, G. P. Bourenov, P. Macheroux, and T. Clausen. 2005. The 1.3 Å crystal structure of the flavoprotein YqjM reveals a novel class of Old Yellow Enzyme. J. Biol. Chem. 280:27904-27913.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 27904-27913
-
-
Kitzing, K.1
Fitzpatrick, T.B.2
Wilken, C.3
Sawa, J.4
Bourenov, G.P.5
Macheroux, P.6
Clausen, T.7
-
22
-
-
0036933705
-
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
-
Nelson, K. E., C. Weinel, I. T. Paulsen, R. J. Dodson, H. Hilbert, V. A. Martins dos Santos, et al. 2002. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol. 4:799-808.
-
(2002)
Environ. Microbiol
, vol.4
, pp. 799-808
-
-
Nelson, K.E.1
Weinel, C.2
Paulsen, I.T.3
Dodson, R.J.4
Hilbert, H.5
Martins dos Santos, V.A.6
-
23
-
-
0033754165
-
Transformation of 2,4,6-trinitrotoluene by purified xenobiotic reductase B from Pseudomonas fluorescens I-C
-
Pak, J. W., K. L. Knoke, D. R. Noguera, B. G. Fox, and G. H. Chambliss. 2000. Transformation of 2,4,6-trinitrotoluene by purified xenobiotic reductase B from Pseudomonas fluorescens I-C. Appl. Environ. Microbiol. 66:4742-4750.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 4742-4750
-
-
Pak, J.W.1
Knoke, K.L.2
Noguera, D.R.3
Fox, B.G.4
Chambliss, G.H.5
-
24
-
-
20444368458
-
Bioremediation of polynitrated aromatic compounds: Plants and microbes put up a fight
-
Ramos, J. L., M. M. González-Pérez, A. Caballero, and P. van Dillewijn. 2005. Bioremediation of polynitrated aromatic compounds: plants and microbes put up a fight. Curr. Opin. Biotechnol. 16:275-281.
-
(2005)
Curr. Opin. Biotechnol
, vol.16
, pp. 275-281
-
-
Ramos, J.L.1
González-Pérez, M.M.2
Caballero, A.3
van Dillewijn, P.4
-
25
-
-
33645023614
-
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
-
Scannell, D. R., K. P. Byrne, J. L. Gordon, S. Wong, and K. H. Wolfe. 2006. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440:341-345.
-
(2006)
Nature
, vol.440
, pp. 341-345
-
-
Scannell, D.R.1
Byrne, K.P.2
Gordon, J.L.3
Wong, S.4
Wolfe, K.H.5
-
26
-
-
0035824388
-
Structural mechanisms of QacR induction and multidrug recognition
-
Schumacher, M. A., M. C. Miller, S. Grkovic, M. H. Brown, R. A. Skurray, and R. G. Brennan. 2001. Structural mechanisms of QacR induction and multidrug recognition. Science 294:2158-2163.
-
(2001)
Science
, vol.294
, pp. 2158-2163
-
-
Schumacher, M.A.1
Miller, M.C.2
Grkovic, S.3
Brown, M.H.4
Skurray, R.A.5
Brennan, R.G.6
-
27
-
-
24344489015
-
Proteomic analysis reveals the participation of energy-and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene
-
Segura, A., P. Godoy, P. van Dillewijn, A. Hurtado, N. Arroyo, S. Santacruz, and J. L. Ramos. 2005. Proteomic analysis reveals the participation of energy-and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene. J. Bacteriol. 187:5937- 5945.
-
(2005)
J. Bacteriol
, vol.187
, pp. 5937-5945
-
-
Segura, A.1
Godoy, P.2
van Dillewijn, P.3
Hurtado, A.4
Arroyo, N.5
Santacruz, S.6
Ramos, J.L.7
-
28
-
-
34547117597
-
TNT biotransformation: When chemistry confronts mineralization
-
Smets, B. F., H. Yin, and A. Esteve-Nuñez. 2007. TNT biotransformation: when chemistry confronts mineralization. Appl. Microbiol. Biotechnol. 76:267-277.
-
(2007)
Appl. Microbiol. Biotechnol
, vol.76
, pp. 267-277
-
-
Smets, B.F.1
Yin, H.2
Esteve-Nuñez, A.3
-
29
-
-
26444484280
-
Promising strategies for the mineralisation of 2,4,6-trinitrotoluene
-
Stenuit, B., L. Eyers, S. El Fantroussi, and S. N. Agathos. 2005. Promising strategies for the mineralisation of 2,4,6-trinitrotoluene. Rev. Environ. Sci. Bio/Technol. 4:39-60.
-
(2005)
Rev. Environ. Sci. Bio/Technol
, vol.4
, pp. 39-60
-
-
Stenuit, B.1
Eyers, L.2
El Fantroussi, S.3
Agathos, S.N.4
-
30
-
-
10944230777
-
Duplication of divergence: The evolution of new genes and old ideas
-
Taylor, J. S., and J. Raes. 2004. Duplication of divergence: the evolution of new genes and old ideas. Annu. Rev. Genet. 38:615-643.
-
(2004)
Annu. Rev. Genet
, vol.38
, pp. 615-643
-
-
Taylor, J.S.1
Raes, J.2
-
31
-
-
55049102309
-
Type II hydride transferases from different microorganisms yield nitrite and diarylamines from polyaromatic compounds
-
van Dillewijn, P., R.-M. Wittich, A. Caballero, and J. L. Ramos. 2008. Type II hydride transferases from different microorganisms yield nitrite and diarylamines from polyaromatic compounds. Appl. Environ. Microbiol. 74:6820-6823.
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 6820-6823
-
-
van Dillewijn, P.1
Wittich, R.-M.2
Caballero, A.3
Ramos, J.L.4
-
32
-
-
0031985535
-
Initial reductive reactions in aerobic microbial metabolism of 2,4,6-trinitrotoluene
-
Vorbeck, C., H. Lenke, P. Fischer, J. C. Spain, and H.-J. Knackmuss. 1998. Initial reductive reactions in aerobic microbial metabolism of 2,4,6-trinitrotoluene. Appl. Environ. Microbiol. 64:246-252.
-
(1998)
Appl. Environ. Microbiol
, vol.64
, pp. 246-252
-
-
Vorbeck, C.1
Lenke, H.2
Fischer, P.3
Spain, J.C.4
Knackmuss, H.-J.5
-
33
-
-
34250957970
-
Ein zweites sauerstoffübertragendes Ferment und sein Absorptionspektrum.
-
Warburg, O., and W. Christian. 1932. Ein zweites sauerstoffübertragendes Ferment und sein Absorptionspektrum. Naturwissenschaften 20:688.
-
(1932)
Naturwissenschaften
, vol.20
, pp. 688
-
-
Warburg, O.1
Christian, W.2
-
34
-
-
0242418140
-
2,4,6-Trinitrotoluene reduction by an Fe-only hydrogenase in Clostridium acetobutylicum
-
Watrous, M. M., S. Clark, R. Kutty, S. Huang, F. B Rudolph, J. B. Hughes, and G. N. Bennet. 2003. 2,4,6-Trinitrotoluene reduction by an Fe-only hydrogenase in Clostridium acetobutylicum. Appl. Environ. Microbiol. 69:1542-1547.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 1542-1547
-
-
Watrous, M.M.1
Clark, S.2
Kutty, R.3
Huang, S.4
Rudolph, F.B.5
Hughes, J.B.6
Bennet, G.N.7
-
35
-
-
0035987236
-
New uses for an old enzyme'-the Old Yellow Enzyme family of flavoenzymes
-
Williams, R. E., and N. C. Bruce. 2002. 'New uses for an old enzyme'-the Old Yellow Enzyme family of flavoenzymes. Microbiology 148:1607-1614.
-
(2002)
Microbiology
, vol.148
, pp. 1607-1614
-
-
Williams, R.E.1
Bruce, N.C.2
-
36
-
-
2942563803
-
Biotransformation of explosives by the Old Yellow Enzyme family of flavoproteins
-
Williams, R. E., D. A. Rathbone, N. S. Scrutton, and N. C. Bruce. 2004. Biotransformation of explosives by the Old Yellow Enzyme family of flavoproteins. Appl. Environ. Microbiol. 7:3566-3574.
-
(2004)
Appl. Environ. Microbiol
, vol.7
, pp. 3566-3574
-
-
Williams, R.E.1
Rathbone, D.A.2
Scrutton, N.S.3
Bruce, N.C.4
-
37
-
-
38949213661
-
OYE flavoprotein reductases initiate the condensation of TNT-derived intermediates to secondary diaryl amines and nitrite
-
Wittich, R. M., A. Haïdour, P. van Dillewijn, and J. L. Ramos. 2008. OYE flavoprotein reductases initiate the condensation of TNT-derived intermediates to secondary diaryl amines and nitrite. Environ. Sci. Technol. 42:734-739.
-
(2008)
Environ. Sci. Technol
, vol.42
, pp. 734-739
-
-
Wittich, R.M.1
Haïdour, A.2
van Dillewijn, P.3
Ramos, J.L.4
|