-
1
-
-
0141625782
-
Amplification efficiency of thermostable DNA polymerases
-
Arezi, B., W. Xing, J. A. Sorge, and H. H. Hogrefe. 2003. Amplification efficiency of thermostable DNA polymerases. Anal. Biochem. 321:226-235.
-
(2003)
Anal. Biochem
, vol.321
, pp. 226-235
-
-
Arezi, B.1
Xing, W.2
Sorge, J.A.3
Hogrefe, H.H.4
-
2
-
-
0028211009
-
PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates
-
Barnes, W. M. 1994. PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proc. Natl. Acad. Sci. USA 91:2216-2220.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 2216-2220
-
-
Barnes, W.M.1
-
3
-
-
0029832927
-
Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
-
Barns, S. M., C. F. Delwiche, J. D. Palmer, and N. R. Pace. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93:9188-9193.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9188-9193
-
-
Barns, S.M.1
Delwiche, C.F.2
Palmer, J.D.3
Pace, N.R.4
-
4
-
-
34347222917
-
Sequencing complete mitochondrial and plastid genomes
-
Burger, G., D. V. Lavrov, L. Forget, and B. F. Lang. 2007. Sequencing complete mitochondrial and plastid genomes. Nat. Protoc. 2:603-614.
-
(2007)
Nat. Protoc
, vol.2
, pp. 603-614
-
-
Burger, G.1
Lavrov, D.V.2
Forget, L.3
Lang, B.F.4
-
5
-
-
17044446557
-
Cloning, expression, and characterization of DNA polymerase I from the hyperthermophilic archaea Thermococcus fumicolans
-
Cambon-Bonavita, M. A., P. Schmitt, M. Zieger, J. M. Flaman, F. Lesongeur, G. Raguenes, D. Bindel, N. Frisch, Z. Lakkis, D. Dupret, G. Barbier, and J. Querellou. 2000. Cloning, expression, and characterization of DNA polymerase I from the hyperthermophilic archaea Thermococcus fumicolans. Extremophiles 4:215-225.
-
(2000)
Extremophiles
, vol.4
, pp. 215-225
-
-
Cambon-Bonavita, M.A.1
Schmitt, P.2
Zieger, M.3
Flaman, J.M.4
Lesongeur, F.5
Raguenes, G.6
Bindel, D.7
Frisch, N.8
Lakkis, Z.9
Dupret, D.10
Barbier, G.11
Querellou, J.12
-
6
-
-
0032875628
-
Two family B DNA polymerases from Aeropyrum pernix, an aerobic hyperthermophilic crenarchaeote
-
Cann, I. K., S. Ishino, N. Nomura, Y. Sako, and Y. Ishino. 1999. Two family B DNA polymerases from Aeropyrum pernix, an aerobic hyperthermophilic crenarchaeote. J. Bacteriol. 181:5984-5992.
-
(1999)
J. Bacteriol
, vol.181
, pp. 5984-5992
-
-
Cann, I.K.1
Ishino, S.2
Nomura, N.3
Sako, Y.4
Ishino, Y.5
-
7
-
-
32044468517
-
Protein trans-splicing and characterization of a split family B-type DNA polymerase from the hyperthermophilic archaeal parasite Nanoarchaeum equitans
-
Choi, J. J., K. H. Nam, B. Min, S. J. Kim, D. Söll, and S. T. Kwon. 2006. Protein trans-splicing and characterization of a split family B-type DNA polymerase from the hyperthermophilic archaeal parasite Nanoarchaeum equitans. J. Mol. Biol. 356:1093-1106.
-
(2006)
J. Mol. Biol
, vol.356
, pp. 1093-1106
-
-
Choi, J.J.1
Nam, K.H.2
Min, B.3
Kim, S.J.4
Söll, D.5
Kwon, S.T.6
-
8
-
-
0025324987
-
-
Cimino, G. D., K. Metchette, S. T. Isaacs, and Y. S. Zhu. 1990. More false-positive problems. Nature 345:773-774.
-
Cimino, G. D., K. Metchette, S. T. Isaacs, and Y. S. Zhu. 1990. More false-positive problems. Nature 345:773-774.
-
-
-
-
9
-
-
0029838624
-
PCR fidelity of Pfu DNA polymerase and other thermostable DNA polymerases
-
Cline, J., J. C. Braman, and H. H. Hogrefe. 1996. PCR fidelity of Pfu DNA polymerase and other thermostable DNA polymerases. Nucleic Acids Res. 24:3546-3551.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3546-3551
-
-
Cline, J.1
Braman, J.C.2
Hogrefe, H.H.3
-
10
-
-
0027165849
-
Incorporation of dITP or 7-deaza dGTP during PCR improves sequencing of the product
-
Dierick, H., M. Stul, W. De Kelver, P. Marynen, and J. J. Cassiman. 1993. Incorporation of dITP or 7-deaza dGTP during PCR improves sequencing of the product. Nucleic Acids Res. 21:4427-4428.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 4427-4428
-
-
Dierick, H.1
Stul, M.2
De Kelver, W.3
Marynen, P.4
Cassiman, J.J.5
-
11
-
-
0037137278
-
PCR performance of the highly thermostable proof-reading B-type DNA polymerase from Pyrococcus abyssi
-
Dietrich, J., P. Schmitt, M. Zieger, B. Preve, J. L. Rolland, H. Chaabihi, and Y. Gueguen. 2002. PCR performance of the highly thermostable proof-reading B-type DNA polymerase from Pyrococcus abyssi. FEMS Microbiol. Lett. 217:89-94.
-
(2002)
FEMS Microbiol. Lett
, vol.217
, pp. 89-94
-
-
Dietrich, J.1
Schmitt, P.2
Zieger, M.3
Preve, B.4
Rolland, J.L.5
Chaabihi, H.6
Gueguen, Y.7
-
12
-
-
0036894880
-
Structural basis for uracil recognition by archaeal family B DNA polymerases
-
Fogg, M. J., L. H. Pearl, and B. A. Connolly. 2002. Structural basis for uracil recognition by archaeal family B DNA polymerases. Nat. Struct. Biol. 9:922-927.
-
(2002)
Nat. Struct. Biol
, vol.9
, pp. 922-927
-
-
Fogg, M.J.1
Pearl, L.H.2
Connolly, B.A.3
-
13
-
-
34548426097
-
Interaction of the family B DNA polymerase from the archaeon Pyrococcus furiosus with deaminated bases
-
Gill, S., R. O'Neill, R. J. Lewis, and B. A. Connolly. 2007. Interaction of the family B DNA polymerase from the archaeon Pyrococcus furiosus with deaminated bases. J. Mol. Biol. 372:855-863.
-
(2007)
J. Mol. Biol
, vol.372
, pp. 855-863
-
-
Gill, S.1
O'Neill, R.2
Lewis, R.J.3
Connolly, B.A.4
-
14
-
-
0033529945
-
A read-ahead function in archaeal DNA polymerases detects promutagenic template-strand uracil
-
Greagg, M. A., M. J. Fogg, G. Panayotou, S. J. Evans, B. A. Connolly, and L. H. Pearl. 1999. A read-ahead function in archaeal DNA polymerases detects promutagenic template-strand uracil. Proc. Natl. Acad. Sci. USA 96:9045-9050.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9045-9050
-
-
Greagg, M.A.1
Fogg, M.J.2
Panayotou, G.3
Evans, S.J.4
Connolly, B.A.5
Pearl, L.H.6
-
15
-
-
0037154224
-
Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation
-
Hogrefe, H. H., C. J. Hansen, B. R. Scott, and K. B. Nielson. 2002. Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation. Proc. Natl. Acad. Sci. USA 99:596-601.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 596-601
-
-
Hogrefe, H.H.1
Hansen, C.J.2
Scott, B.R.3
Nielson, K.B.4
-
16
-
-
0036693940
-
Long PCR-based amplification of the entire mitochondrial genome from single parasitic nematodes
-
Hu, M., N. B. Chilton, and R. B. Gasser. 2002. Long PCR-based amplification of the entire mitochondrial genome from single parasitic nematodes. Mol. Cell. Probes 16:261-267.
-
(2002)
Mol. Cell. Probes
, vol.16
, pp. 261-267
-
-
Hu, M.1
Chilton, N.B.2
Gasser, R.B.3
-
17
-
-
0037007636
-
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
-
Huber, H., M. J. Hohn, R. Rachel, T. Fuchs, V. C. Wimmer, and K. O. Stetter. 2002. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 417:63-67.
-
(2002)
Nature
, vol.417
, pp. 63-67
-
-
Huber, H.1
Hohn, M.J.2
Rachel, R.3
Fuchs, T.4
Wimmer, V.C.5
Stetter, K.O.6
-
18
-
-
0037386511
-
The phylum Nanoarchaeota: Present knowledge and future perspectives of a unique form of life
-
Huber, H., M. J. Hohn, K. O. Stetter, and R. Rachel. 2003. The phylum Nanoarchaeota: present knowledge and future perspectives of a unique form of life. Res. Microbiol. 154:165-171.
-
(2003)
Res. Microbiol
, vol.154
, pp. 165-171
-
-
Huber, H.1
Hohn, M.J.2
Stetter, K.O.3
Rachel, R.4
-
19
-
-
0031922356
-
A novel DNA polymerase family found in Archaea
-
Ishino, Y., K. Komori, I. K. Cann, and Y. Koga. 1998. A novel DNA polymerase family found in Archaea. J. Bacteriol. 180:2232-2236.
-
(1998)
J. Bacteriol
, vol.180
, pp. 2232-2236
-
-
Ishino, Y.1
Komori, K.2
Cann, I.K.3
Koga, Y.4
-
20
-
-
0040877043
-
Cloning and characterization of a family B DNA polymerase from the hyperthermophilic crenarchaeon Pyrobaculum islandicum
-
Kahler, M., and G. Antranikian. 2000. Cloning and characterization of a family B DNA polymerase from the hyperthermophilic crenarchaeon Pyrobaculum islandicum. J. Bacteriol. 182:655-663.
-
(2000)
J. Bacteriol
, vol.182
, pp. 655-663
-
-
Kahler, M.1
Antranikian, G.2
-
21
-
-
21544477228
-
-
Kleiboeker, S. B. 2005. Quantitative assessment of the effect of uracil-DNA glycosylase on amplicon DNA degradation and RNA amplification in reverse transcription-PCR. Virol. J. 2:29.
-
Kleiboeker, S. B. 2005. Quantitative assessment of the effect of uracil-DNA glycosylase on amplicon DNA degradation and RNA amplification in reverse transcription-PCR. Virol. J. 2:29.
-
-
-
-
22
-
-
0029929717
-
Archaebacterial DNA polymerases tightly bind uracil-containing DNA
-
Lasken, R. S., D. M. Schuster, and A. Rashtchian. 1996. Archaebacterial DNA polymerases tightly bind uracil-containing DNA. J. Biol. Chem. 271:17692-17696.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 17692-17696
-
-
Lasken, R.S.1
Schuster, D.M.2
Rashtchian, A.3
-
23
-
-
32844471325
-
Cloning, expression, and partial characterization of a family B-type DNA polymerase from the hyperthermophilic crenarchaeon Sulfophobococcus zilligii
-
Lee, Y. J., J. J. Choi, and S. T. Kwon. 2006. Cloning, expression, and partial characterization of a family B-type DNA polymerase from the hyperthermophilic crenarchaeon Sulfophobococcus zilligii. Enzyme Microb. Technol. 38:821-830.
-
(2006)
Enzyme Microb. Technol
, vol.38
, pp. 821-830
-
-
Lee, Y.J.1
Choi, J.J.2
Kwon, S.T.3
-
24
-
-
0025018259
-
Use of uracil DNA glycosylase to control carry-over contamination in polymerase chain reactions
-
Longo, M. C., M. S. Berninger, and J. L. Hartley. 1990. Use of uracil DNA glycosylase to control carry-over contamination in polymerase chain reactions. Gene 93:125-128.
-
(1990)
Gene
, vol.93
, pp. 125-128
-
-
Longo, M.C.1
Berninger, M.S.2
Hartley, J.L.3
-
25
-
-
0025788241
-
High-fidelity amplification using a thermostable DNA polymerase isolated from Pyrococcus furiosus
-
Lundberg, K. S., D. D. Shoemaker, M. W. Adams, J. M. Short, J. A. Sorge, and E. J. Mathur. 1991. High-fidelity amplification using a thermostable DNA polymerase isolated from Pyrococcus furiosus. Gene 108:1-6.
-
(1991)
Gene
, vol.108
, pp. 1-6
-
-
Lundberg, K.S.1
Shoemaker, D.D.2
Adams, M.W.3
Short, J.M.4
Sorge, J.A.5
Mathur, E.J.6
-
26
-
-
0033844637
-
Improved cycle sequencing of GC-rich templates by a combination of nucleotide analogs
-
Motz, M., S. Paabo, and C. Kilger. 2000. Improved cycle sequencing of GC-rich templates by a combination of nucleotide analogs. BioTechniques 29:268-270.
-
(2000)
BioTechniques
, vol.29
, pp. 268-270
-
-
Motz, M.1
Paabo, S.2
Kilger, C.3
-
27
-
-
17944380943
-
The Y-family of DNA polymerases
-
Ohmori, H., E. C. Friedberg, R. P. Fuchs, M. F. Goodman, F. Hanaoka, D. Hinkle, T. A. Kunkel, C. W. Lawrence, Z. Livneh, T. Nohmi, L. Prakash, S. Prakash, T. Todo, G. C. Walker, Z. Wang, and R. Woodgate. 2001. The Y-family of DNA polymerases. Mol. Cell 8:7-8.
-
(2001)
Mol. Cell
, vol.8
, pp. 7-8
-
-
Ohmori, H.1
Friedberg, E.C.2
Fuchs, R.P.3
Goodman, M.F.4
Hanaoka, F.5
Hinkle, D.6
Kunkel, T.A.7
Lawrence, C.W.8
Livneh, Z.9
Nohmi, T.10
Prakash, L.11
Prakash, S.12
Todo, T.13
Walker, G.C.14
Wang, Z.15
Woodgate, R.16
-
29
-
-
0027178764
-
Preventing false positives: Quantitative evaluation of three protocols for inactivation of polymerase chain reaction amplification products
-
Rys, P. N., and D. H. Persing. 1993. Preventing false positives: quantitative evaluation of three protocols for inactivation of polymerase chain reaction amplification products. J. Clin. Microbiol. 31:2356-2360.
-
(1993)
J. Clin. Microbiol
, vol.31
, pp. 2356-2360
-
-
Rys, P.N.1
Persing, D.H.2
-
30
-
-
0034705405
-
Uracil-DNA glycosylase in the extreme thermophile Archaeoglobus fulgidus
-
Sandigursky, M., and W. A. Franklin. 2000. Uracil-DNA glycosylase in the extreme thermophile Archaeoglobus fulgidus. J. Biol. Chem. 275:19146-19149.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 19146-19149
-
-
Sandigursky, M.1
Franklin, W.A.2
-
31
-
-
0020465927
-
Nucleotide sequence of bacteriophage lambda DNA
-
Sanger, F., A. R. Coulson, G. F. Hong, D. F. Hill, and G. B. Petersen. 1982. Nucleotide sequence of bacteriophage lambda DNA. J. Mol. Biol. 162:729-773.
-
(1982)
J. Mol. Biol
, vol.162
, pp. 729-773
-
-
Sanger, F.1
Coulson, A.R.2
Hong, G.F.3
Hill, D.F.4
Petersen, G.B.5
-
32
-
-
0027298967
-
Low incorporation of dUMP by some thermostable DNA polymerases may limit their use in PCR amplifications
-
Slupphaug, G., I. Alseth, I. Eftedal, G. Volden, and H. E. Krokan. 1993. Low incorporation of dUMP by some thermostable DNA polymerases may limit their use in PCR amplifications. Anal. Biochem. 211:164-169.
-
(1993)
Anal. Biochem
, vol.211
, pp. 164-169
-
-
Slupphaug, G.1
Alseth, I.2
Eftedal, I.3
Volden, G.4
Krokan, H.E.5
-
33
-
-
0029942194
-
Heat-labile uracil-DNA glycosylase: Purification and characterization
-
Sobek, H., M. Schmidt, B. Frey, and K. Kaluza. 1996. Heat-labile uracil-DNA glycosylase: purification and characterization. FEBS Lett. 388:1-4.
-
(1996)
FEBS Lett
, vol.388
, pp. 1-4
-
-
Sobek, H.1
Schmidt, M.2
Frey, B.3
Kaluza, K.4
-
34
-
-
33947601964
-
Characterization and PCR performance of a family B-type DNA polymerase from the hyperthermophilic crenarchaeon Staphylothermus marinus
-
Song, J. M., J. J. Choi, T. O. Kim, M. S. Seo, M. S. Lee, H. K. Kim, and S. T. Kwon. 2007. Characterization and PCR performance of a family B-type DNA polymerase from the hyperthermophilic crenarchaeon Staphylothermus marinus. Enzyme Microb. Technol. 40:1475-1483.
-
(2007)
Enzyme Microb. Technol
, vol.40
, pp. 1475-1483
-
-
Song, J.M.1
Choi, J.J.2
Kim, T.O.3
Seo, M.S.4
Lee, M.S.5
Kim, H.K.6
Kwon, S.T.7
-
35
-
-
0030666190
-
Characterization of DNA polymerase from Pyrococcus sp. strain KOD1 and its application to PCR
-
Takagi, M., M. Nishioka, H. Kakihara, M. Kitabayashi, H. Inoue, B. Kawakami, M. Oka, and T. Imanaka. 1997. Characterization of DNA polymerase from Pyrococcus sp. strain KOD1 and its application to PCR. Appl. Environ. Microbiol. 63:4504-4510.
-
(1997)
Appl. Environ. Microbiol
, vol.63
, pp. 4504-4510
-
-
Takagi, M.1
Nishioka, M.2
Kakihara, H.3
Kitabayashi, M.4
Inoue, H.5
Kawakami, B.6
Oka, M.7
Imanaka, T.8
-
36
-
-
39449126193
-
Uracil recognition by replicative DNA polymerases is limited to the Archaea, not occurring with Bacteria and Eukarya
-
Wardle, J., P. M. Burgers, I. K. Cann, K. Darley, P. Heslop, E. Johansson, L. J. Lin, P. McGlynn, J. Sanvoisin, C. M. Stith, and B. A. Connolly. 2008. Uracil recognition by replicative DNA polymerases is limited to the Archaea, not occurring with Bacteria and Eukarya. Nucleic Acids Res. 36:705-711.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 705-711
-
-
Wardle, J.1
Burgers, P.M.2
Cann, I.K.3
Darley, K.4
Heslop, P.5
Johansson, E.6
Lin, L.J.7
McGlynn, P.8
Sanvoisin, J.9
Stith, C.M.10
Connolly, B.A.11
-
37
-
-
0242300069
-
The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism
-
Waters, E., M. J. Hohn, I. Ahel, D. E. Graham, M. D. Adams, M. Barnstead, K. Y. Beeson, L. Bibbs, R. Bolanos, M. Keller, K. Kretz, X. Lin, E. Mathur, J. Ni, M. Podar, T. Richardson, G. G. Sutton, M. Simon, D. Soll, K. O. Stetter, J. M. Short, and M. Noordewier. 2003. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc. Natl. Acad. Sci. USA 100:12984-12988.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12984-12988
-
-
Waters, E.1
Hohn, M.J.2
Ahel, I.3
Graham, D.E.4
Adams, M.D.5
Barnstead, M.6
Beeson, K.Y.7
Bibbs, L.8
Bolanos, R.9
Keller, M.10
Kretz, K.11
Lin, X.12
Mathur, E.13
Ni, J.14
Podar, M.15
Richardson, T.16
Sutton, G.G.17
Simon, M.18
Soll, D.19
Stetter, K.O.20
Short, J.M.21
Noordewier, M.22
more..
-
38
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese, C. R., O. Kandler, and M. L. Wheelis. 1990. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87:4576-4579.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
|