Determination of the secondary structure of proteins in different environments by FTIR-ATR spectroscopy and PLS regression

Biopolymers

Volumn 89, Issue 11, 2008, Pages 895-905

  Wang, Yeqiu ^a   Boysen, Reinhard I ^a   Wood, Bayden R ^a   Kansiz, Mustafa ^a   McNaughton, Don ^a   Hearn, Milton T W ^a  

^a MONASH UNIVERSITY   (Australia)

Author keywords

ATR; FTIR; PLS; Protein; Secondary structure

Indexed keywords

ABS RESINS; ADSORPTION; CHROMATOGRAPHIC ANALYSIS; CURVE FITTING; DATA STRUCTURES; FOURIER TRANSFORM INFRARED SPECTROSCOPY; HYDROPHOBIC CHROMATOGRAPHY; HYDROPHOBICITY; NETWORK PROTOCOLS; SORPTION; SURFACE CHEMISTRY;

AS MODELS; ATR; BUTYL LIGANDS; CHROMATOGRAPHIC PURIFICATIONS; CRYSTALLOGRAPHIC STRUCTURES; EXPERIMENTAL DATUM; FTIR; FTIR-ATR; GREAT-ER; HYDROPHOBIC; HYDROPHOBIC INTERACTION CHROMATOGRAPHIES; HYDROPHOBIC SURFACES; PARTIAL LEAST SQUARES; PLS; PLS REGRESSIONS; POLYMER BEADS; RANDOM COILS; REFERENCE DATUM; SECONDARY STRUCTURE; SECONDARY STRUCTURE OF PROTEINS; SECONDARY STRUCTURES; SOLID STATES; SORBENT SURFACES; STRUCTURAL CHANGES; STRUCTURAL FEATURES;

PROTEINS;

ALPHA LACTALBUMIN; BETA LACTOGLOBULIN; CHYMOTRYPSIN A; CONCANAVALIN A; CYTOCHROME C; HEMOGLOBIN; IMMUNOGLOBULIN G; LYSOZYME; MYOGLOBIN; RIBONUCLEASE A; TRYPSIN;

ALPHA HELIX; ARTICLE; BETA SHEET; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; FOURIER TRANSFORM INFRARED ATTENUATED TOTAL REFLECTANCE SPECTROSCOPY; HUMAN; HYDROPHOBICITY; INFRARED SPECTROSCOPY; NONHUMAN; PARTIAL LEAST SQUARES REGRESSION; PROTEIN ANALYSIS; PROTEIN DETERMINATION; PROTEIN PURIFICATION; PROTEIN SECONDARY STRUCTURE; QUALITATIVE ANALYSIS; STRUCTURE ANALYSIS; X RAY CRYSTALLOGRAPHY;

ANIMALS; CRYSTALLOGRAPHY, X-RAY; HUMANS; HYDROPHOBICITY; PREDICTIVE VALUE OF TESTS; PROTEIN STRUCTURE, SECONDARY; PROTEINS; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 54949141071     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.21022     Document Type: Article

References (37)

1. Dong, A. Biochemistry 1990, 29, 3303-3308.
2. Dousseau, F.; Pezolet, M. Biochemistry 1990, 29, 8771-8779.
3. Severcan, M.; Severcan, F.; Haris, P. I. J Mol Struct 2001, 565/566, 383-387.
4. Elliot, A.; Ambrose, E. J. Nature 1950, 165, 921-922.
5. Jakes, J.; Krimm, S. Spectrochim Acta Part A 1971, 27, 35-63.
6. Krimm, S.; Bandekar, J. Adv Protein Chem 1986, 38, 181-364.
7. Parker, F. S. Applications of Infrared Spectroscopy in Biochemistry, Biology and Medicine. Plenum: New York, 1971; pp 232-270.
8. Susi, H. Methods Enzymol 1972, 26, 455-472.
9. Calvert, J. F.; Hill, J. L.; Dong, A. Arch Biochem Biophys 1997, 346, 287-293.
10. Henkel, B.; Bayer, E. J Pept Sci 1998, 4, 461-470.
11. Thamann, T. J.; Chao, R. S. Spectochim Acta Part A 1999, 55, 2261-2270.
12. Lee, D. C.; Haris, P. I.; Chapman, D.; Mitchell, R. C. Biochemistry 1990, 29, 9185-9193.
13. Byler, D. M.; Susi, H. Biopolymers 1986, 25, 469-487.
14. Susi, H.; Byler, D. M. Biochem Biophys Res Commun 1983, 115, 391-397.
15. Yang, W. J.; Griffiths, D.; Byler, D. M.; Susi, H. Appl Spectrosc 1985, 39, 282-287.
16. Cai S.; Singh, B. R. 2000. in Infrared Analysis of Peptides and Proteins. pp 117-129.ACS Symposium Series 750.
17. Haaland, D. M.; Thomas, E. V. Anal Chem 1988, 60, 1193-1202.
18. Haaland, D. M.; Thomas, E. V. Anal Chem 1988, 60, 1202-1208.
19. Thomas, E. V.; Haaland, D. M. Anal Chem 1990, 62, 1091-1099.
20. Hoy, M.; Steen, K.; Martens, H. Chemom Intell Lab Syst 1998, 44, 123-133.
21. Haaland, D. M.; Melgaard, D. K. Appl Spectrosc 1999, 53, 390-395.
22. Haaland, D. M.; Melgaard, D. K. Appl Spectrosc 2001, 55, 1-8.
23. Ball, A. R. A. L. Jones. Langmuir 1995, 11, 3542-3548.
24. Buijs, J. W.; Norde, W; Lichtenbelt, J. W. T. Langmuir 1996, 12, 1605-1613.
25. Goldberg, M. E.; Chaffotte, A. F. Protein Sci 2005, 14, 2781-2792.
26. Peppas, N. A.; Wright, S. L. Eur J Pharm Biopharm 1998, 46, 15-29.
27. Giacomelli, C. E.; Bremer, M. G. E. G.; Norde, W. J Colloid Interface Sci 1999, 220, 13-23.
28. Hearn, M. T. W.; Quirino, J. P.; Whisstock, J.; Terabe, S. Anal Chem 2002, 74, 2107-2119.
29. Xiao, Y.; Jones, T. T.; Laurent, A. H.; O'Connell, P. P.; Przybycien, T. M.; Fernandez, E. J. Biotechnol Bioeng 2007, 96, 80-93.
30. Levitt, M. J Mol Biol 1977, 114, 181-293.
31. Xie, D.; Bhakuni, V.; Freire, E. Biochemistry 1991, 30, 10673-10678.
32. Brownlow, S. J. H. M.; Cabral, R.; Cooper, D. R.; Flower, S. J.; Yewdall, I.; Polikarpov, A. C.; North, L.; Sawyer. Structure 1997, 5, 481-495.
33. Shenoy, B.; Wang, Y.; Shan, W; Margolin, A. L. Biotechnol Bioeng 2001, 73, 358-369.
34. Pikal, M. J.; Rigsbee, D. R. Pharm Res 1997, 14, 1379-1387.
35. Whittingham, J. L.; Edwards, D. J.; Antson, A. A.; Clarkson, J. M.; Dodson, G. G. Biochemistry 1998, 37, 11516-11523.
36. Jorgensen, A. M.; Kristensen, S. M.; Led, J. J.; Balschmidt, P. J Mol Biol 1992, 227, 1146-1163.
37. Lin, F.-Y.; Chen, W.-Y.; Hearn, M. T. W. Anal Chem 2001, 73, 3875-3883.