Analysis of forensic SNPs in the canine mtDNA HV1 mutational hotspot region

Journal of Forensic Sciences

Volumn 53, Issue 6, 2008, Pages 1325-1333

  Baute, Danielle T ^a   Satkoski, Jessica A ^b   Spear, Theresa F ^b   Smith, David G ^b,c   Dayton, Melody R ^a   Malladi, Venkat S ^b   Goyal, Vivek ^b   Kou, Alexander ^b   Kinaga, Jennifer L ^b   Kanthaswamy, Sreetharan ^b,c  

^a Jan Bashinski DNA Laboratory   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Domestic dog; Forensic science; Hypervariable region 1; Mitochondrial DNA; Rapid screening; Sequence variation; Trace evidence

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL EXPERIMENT; ARTICLE; BREED; CAT; DOG; DOMESTIC ANIMAL; FORENSIC SCIENCE; GENBANK; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; MUTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DIFFERENCE;

ANIMALS; COMPLEMENTARITY DETERMINING REGIONS; DNA, MITOCHONDRIAL; DOGS; GENETIC VARIATION; HAPLOTYPES; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 54949129758     PISSN: 00221198     EISSN: 15564029     Source Type: Journal    
DOI: 10.1111/j.1556-4029.2008.00880.x     Document Type: Article

References (15)

1. Kim KS, Lee SE, Jeong HW, Ha JH. The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome. Mol Phylogenet Evol 1998 10 : 210 20.
2. Okumura N, Ishiguro N, Nakano M, Matsui A, Sahara M. Intra- and interbreed genetic variations of mitochondrial DNA major non-coding regions in Japanese native dog breeds (Canis familiaris). Anim Genet 1996 27 : 397 405.
3. Himmelberger AL, Spear TF, Satkoski JA, George DA, Garnica WT, Malladi VS, et al. Forensic utility of the mitochondrial hypervariable 1 region of domestic dogs, in conjunction with breed and geographic information. J Forensic Sci 2008 53 (1 81 9.
4. Bender K, Farfan MJ, Schneider PM. Preparation of degraded human DNA under controlled conditions. Forensic Sci Int 2004 139 : 135 40.
5. Gabriel MN, Huffine EF, Ryan JH, Holland MM, Parsons TJ. Improved mtDNA sequence analysis of forensic remains using a "mini-primer set" amplification strategy. J Forensic Sci 2001 46 : 247 53.
6. Kim SK, Seong EL, Ho WJ, Ji Hong HH. The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome. Mol Phylogenet Evol 1998 102 : 210 20.
7. Rozen S, Skaletsky HS. Primer3 on the WWW for general users and for biologist programmers. In : Krawetz S, Misener S, editors. Bioinformatics methods and protocols: methods in molecular biology. Totowa, NJ : Humana Press, 2000 365 86.
8. Bollum FJ. Degradation of the homopolymer complexes polydeoxyadenylate- polydeoxythymidylate, polydeoxyinosinate-polydeoxycytidylate, and polydeoxyguanylate-polydeoxycytidylate by deoxyribonuclease I. J Biol Chem 1965 240 : 2599 601.
9. Melgar E, Goldthwait DA. Deoxyribonucleic acid nucleases. II. The effects of metals on the mechanism of action of deoxyribonuclease I. J Biol Chem 1968 243 : 4409 16.
10. Hall TA. BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 1999 41 : 95 8.
11. Higgins D, Thompson J, Gibson T. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994 22 : 4673 80.
12. Schneider S, Roessli D. ARLEQUIN v. 2.001: a software for population genetic analysis. Geneva : Laboratory of Genetics and Biometry, University of Geneva, 2000.
13. Nei M. Molecular genetics. New York : Columbia Press, 1987.
14. Angleby H, Savolainen P. Forensic informativity of domestic dog mtDNA control region sequences. Forensic Sci Int 2005 154 : 99 110.
15. Gundry RL, Allard MW, Moretti TR, Honeycutt RL, Wilson MR, Monson KL, et al. Mitochondrial DNA analysis of the domestic dog: control region variation within and among breeds. J Forensic Sci 2007 52 (3 562 72.