Filament tracking and encoding for complex biological networks

Proceedings of the 2008 ACM Symposium on Solid and Physical Modeling 2008, SPM'08

Volumn , Issue , 2008, Pages 353-358

  Mayerich, David M ^a   Keyser, John ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Fiber; Microscopy; Segmentation; Volumetric

Indexed keywords

BIOLOGICAL NETWORKS; BOUNDING VOLUMES; CONVENIENT METHODS; DATA SETS; FILAMENT NETWORKS; FILAMENT STRUCTURES; INITIAL STRUCTURES; LARGE DATA SETS; MICROSCOPY; MICROSCOPY DATUMS; NETWORK STRUCTURES; NOVEL METHODS; SAMPLED DATUMS; SAMPLING RESOLUTIONS; SCALAR CHANNELS; SEGMENTATION; SINGLE FILAMENTS; TRACING ALGORITHMS; VOLUME DATA SETS; VOLUME DATUMS; VOLUMETRIC; VOLUMETRIC DATUMS;

FILAMENTS (LAMP); MODELS; SELF PHASE MODULATION; STATISTICAL PROCESS CONTROL; VOLUMETRIC ANALYSIS;

DATA STRUCTURES;

EID: 54949117650     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1364901.1364952     Document Type: Conference Paper

References (11)

1. AL-KOFAHI, K., LASER, S., SZAROWSKI, D., PACE, C, NAGY, G., TURNER, J., AND ROYSAM, B. 2002. Rapid automated three-dimensional tracing of neurons from confocal image stacks. IEEE Transactions on Information Technology in Biomedicine 6, 171-186.
2. DODDAPANENI, P. 2004. Segmentation Strategies for Polymerized Volume Data Sets. PhD thesis, Department of Computer Science, Texas A&M University.
3. GONZALEZ, R. C, AND WOODS, R. E. 2002. Digital Image Processing, 2nd ed. Prentice Hall.
4. HAHN, H. K., PREIM, B., SELLE, D., AND PEITGEN, H. O. 2001. Visualization and interaction techniques for the exploration of vascular structures. Proceedings of the conference on Visualization 01, 395-402.
5. KIRBAS, C., AND QUEK, F. 2004. A review of vessel extraction techniques and algorithms. ACM Computing Suneys 36, 81-121.
6. MAYERICH, D., ABBOTT, L. C, AND MCCORMICK, B. H. 2008. Knife-edge scanning microscopy for imaging and reconstruction of three-dimensional anatomical structures of the mouse brain. Journal of Microscopy in press.
7. CCORMICK, B., BUSSE, B., DODDAPANENI, P., MELEK, Z., AND KEYSER, J. 2004. Compression, segmentation, and modeling of filamentary volumetric data. 333-338.
8. MICHEVA, K. D., AND SMITH, S. J. 2007. Array tomography: A new tool for imaging the molecular architecture and ultrastructure of neural circuits. Neuron 55, 25-36.
9. NIELSEN, AND MUSETH. 2006. Dynamic tubular grid: An eicient data structure and algorithms for high resolution level sets. Journal of Scientic Computing 26, 261-299.
10. OSHER, S. J., AND FEDKIW, R. P. 2002. Level Set Methods and Dynamic Implicit Surfaces. Springer.
11. SARWAL, A., AND DHAWAN, A. 1994. 3-d reconstruction of coronary arteries. IEEE Conference on Engineering in Medicine and Biology 1, 504-505.