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Volumn , Issue , 2008, Pages 663-666

Practical implementation of a network-based Stochastic biochemical simulation system on an FPGA

Author keywords

[No Author keywords available]

Indexed keywords

APPLICATIONS; BIOCHEMICAL ENGINEERING; BOOLEAN FUNCTIONS; FIELD PROGRAMMABLE GATE ARRAYS (FPGA); NETWORK PROTOCOLS; SENSOR NETWORKS; STOCHASTIC CONTROL SYSTEMS;

EID: 54949091196     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/FPL.2008.4630034     Document Type: Conference Paper
Times cited : (7)

References (11)
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    • (1976) J. Comput. Phys , vol.22 , pp. 403-434
    • Gillespie, D.T.1
  • 2
    • 2442440998 scopus 로고    scopus 로고
    • A compiled accelerator for biological cell signaling simulations
    • Feb
    • J. F. Keane et al., "A compiled accelerator for biological cell signaling simulations," in proc. of the 12th Intl. Symp. on FPGA, Feb. 2004, pp. 233-241.
    • (2004) proc. of the 12th Intl. Symp. on FPGA , pp. 233-241
    • Keane, J.F.1
  • 4
    • 48149095060 scopus 로고    scopus 로고
    • FPGA Implementation of a data-driven Stochastic Biochemical Simulator with the Next Reaction Method
    • IEEE, Aug
    • M. Yoshimi et al., "FPGA Implementation of a data-driven Stochastic Biochemical Simulator with the Next Reaction Method," in proc. of the 17th Intl. Conf. on FPL. IEEE, Aug. 2007, pp. 254-259.
    • (2007) proc. of the 17th Intl. Conf. on FPL , pp. 254-259
    • Yoshimi, M.1
  • 5
    • 50149090656 scopus 로고    scopus 로고
    • A framework for implementing a network-based stochastic biochemical simulator on an fpga
    • Dec
    • M. Yoshimi et al., "A framework for implementing a network-based stochastic biochemical simulator on an fpga," in proc. of the Intl. Conf. on ICFPT 07, Dec. 2007, pp. 193-200.
    • (2007) proc. of the Intl. Conf. on ICFPT 07 , pp. 193-200
    • Yoshimi, M.1
  • 6
    • 0001144902 scopus 로고    scopus 로고
    • Efficient exact stochastic simulation of chemical systems with many species and many channels
    • M. A.Gibson and J. Bruck, "Efficient exact stochastic simulation of chemical systems with many species and many channels," J. Phys. Chem. A, vol. 104, no. 9, pp. 1876-1889, 2000.
    • (2000) J. Phys. Chem. A , vol.104 , Issue.9 , pp. 1876-1889
    • Gibson, M.A.1    Bruck, J.2
  • 7
    • 33845368513 scopus 로고    scopus 로고
    • Copasi - a complex pathway simulator
    • Dec
    • S. Hoops et al., "Copasi - a complex pathway simulator," Bioinfor-matlcs, vol. 22, no. 24, pp. 3067-3074, Dec. 2006.
    • (2006) Bioinfor-matlcs , vol.22 , Issue.24 , pp. 3067-3074
    • Hoops, S.1
  • 8
    • 4644266081 scopus 로고    scopus 로고
    • Efficient formulation of the stochastic simulation algorithm for chemically reacting systems
    • Y Cao et al., "Efficient formulation of the stochastic simulation algorithm for chemically reacting systems," J. Chem. Phys., vol. 121, no. 9, pp. 4059-4067, 2004.
    • (2004) J. Chem. Phys , vol.121 , Issue.9 , pp. 4059-4067
    • Cao, Y.1
  • 9
    • 34249950625 scopus 로고    scopus 로고
    • Stochastic simulation of chemical kinetics
    • May
    • D. T. Gillespie, "Stochastic simulation of chemical kinetics," Annual Review of Physical Chemistry, vol. 58, pp. 35-55, May. 2007.
    • (2007) Annual Review of Physical Chemistry , vol.58 , pp. 35-55
    • Gillespie, D.T.1
  • 10
    • 38949164415 scopus 로고    scopus 로고
    • Algorithms and software for stochastic simulation of biochemical reacting systems
    • Sep
    • H. Li, Y. Cao, L. R. Petzold, and D. T. Gillespie, "Algorithms and software for stochastic simulation of biochemical reacting systems," Biotechnology Progress, vol. 24, no. 1, pp. 56-61, Sep. 2007.
    • (2007) Biotechnology Progress , vol.24 , Issue.1 , pp. 56-61
    • Li, H.1    Cao, Y.2    Petzold, L.R.3    Gillespie, D.T.4
  • 11
    • 54949130057 scopus 로고    scopus 로고
    • Tokyo Electron Device, Virtex-5 LXT/SXT PCI Express Evaluation Platform Board, http://www.inrevium.jp/eng/x-fpga-board/hibiki.html.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.