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Volumn 62, Issue 11, 2008, Pages 2718-2726

Detection of "punctuated equilibrium" by Bayesian estimation of speciation and extinction rates, ancestral character states, and rates of anagenetic and cladogenetic evolution on a molecular phylogeny

Author keywords

Cladogenesis; Gene expression; Macroevolution; Molecular phylogenetics; Stasis

Indexed keywords

ACCURACY ASSESSMENT; ALGORITHM; BAYESIAN ANALYSIS; CLADISTICS; DETECTION METHOD; EXTINCTION; GENE EXPRESSION; MARKOV CHAIN; MONTE CARLO ANALYSIS; PHYLOGENY; SPECIATION (BIOLOGY);

EID: 54849411673     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2008.00492.x     Document Type: Article
Times cited : (89)

References (30)
  • 1
    • 0017710531 scopus 로고
    • Is evolution gradual or rectangular? Evidence from living fishes
    • Avise, J. 1977. Is evolution gradual or rectangular? Evidence from living fishes. Proc. Natl. Acad. Sci. USA 74 : 5083 5087.
    • (1977) Proc. Natl. Acad. Sci. USA , vol.74 , pp. 5083-5087
    • Avise, J.1
  • 2
    • 0036846704 scopus 로고    scopus 로고
    • Detection of punctuated equilibrium from molecular phylogenies
    • Bokma, F. 2002. Detection of punctuated equilibrium from molecular phylogenies. J. Evol. Biol. 15 : 1048 1056.
    • (2002) J. Evol. Biol. , vol.15 , pp. 1048-1056
    • Bokma, F.1
  • 3
    • 0344663948 scopus 로고    scopus 로고
    • Testing for equal rates of cladogenesis in diverse taxa
    • Bokma, F. 2003. Testing for equal rates of cladogenesis in diverse taxa. Evolution 57 : 2469 2474.
    • (2003) Evolution , vol.57 , pp. 2469-2474
    • Bokma, F.1
  • 4
    • 27844573066 scopus 로고    scopus 로고
    • Pp. in. W. Härdle. and. B. Ronz, eds. COMPSTAT 2002:Proceedings in Computational Statistics. Physica-Verlag, Heidelberg, Germany.
    • Bos, C. S. 2002. A comparison of marginal likelihood computation methods. Pp. 111 117 in W. Härdle and B. Ronz, eds. COMPSTAT 2002:Proceedings in Computational Statistics. Physica-Verlag, Heidelberg, Germany.
    • (2002) A Comparison of Marginal Likelihood Computation Methods , pp. 111-117
    • Bos, C.S.1
  • 5
    • 0032273615 scopus 로고    scopus 로고
    • General methods for monitoring convergence of iterative simulations
    • and
    • Brooks, S. P., and A. Gelman. 1997. General methods for monitoring convergence of iterative simulations. J. Comput. Graph. Stat. 7 : 434 455.
    • (1997) J. Comput. Graph. Stat. , vol.7 , pp. 434-455
    • Brooks, S.P.1    Gelman, A.2
  • 6
    • 0020414722 scopus 로고
    • Speciation rates and morphological divergence in fishes, tests of gradual versus rectangular modes of evolutionary change
    • and
    • Douglas, M., and J. Avise. 1982. Speciation rates and morphological divergence in fishes, tests of gradual versus rectangular modes of evolutionary change. Evolution 36 : 224 232.
    • (1982) Evolution , vol.36 , pp. 224-232
    • Douglas, M.1    Avise, J.2
  • 7
    • 0002224909 scopus 로고
    • Punctated equilibria: An alternative to phyletic gradualism
    • and. Pp. in. T. J. M. Schopf, ed. Freeman, Cooper and Company, San Francisco, CA.
    • Eldredge, N., and S. J. Gould. 1972. Punctated equilibria: an alternative to phyletic gradualism. Pp. 82 115 in T. J. M. Schopf, ed. Models in paleobiology. Freeman, Cooper and Company, San Francisco, CA.
    • (1972) Models in Paleobiology. , pp. 82-115
    • Eldredge, N.1    Gould, S.J.2
  • 8
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method
    • Felsenstein, J. 1985. Phylogenies and the comparative method. Am. Nat. 125 : 1 15.
    • (1985) Am. Nat. , vol.125 , pp. 1-15
    • Felsenstein, J.1
  • 9
    • 84972492387 scopus 로고
    • Inference from iterative simulation using multiple sequences
    • and
    • Gelman, A., and D. B. Rubin. 1992. Inference from iterative simulation using multiple sequences. Statist. Sci. 7 : 457 511.
    • (1992) Statist. Sci. , vol.7 , pp. 457-511
    • Gelman, A.1    Rubin, D.B.2
  • 11
    • 0027790582 scopus 로고
    • Punctuated equilibrium comes of age
    • and
    • Gould, S., and N. Eldredge. 1993. Punctuated equilibrium comes of age. Nature 366 : 223 227.
    • (1993) Nature , vol.366 , pp. 223-227
    • Gould, S.1    Eldredge, N.2
  • 12
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings, W. 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57 : 97 109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.1
  • 14
    • 0017144189 scopus 로고
    • Natural selection and random genetic drift in phenotypic evolution
    • Lande, R. 1976. Natural selection and random genetic drift in phenotypic evolution. Evolution 30 : 314 334.
    • (1976) Evolution , vol.30 , pp. 314-334
    • Lande, R.1
  • 15
    • 0000548434 scopus 로고
    • Genetic variation and phenotypic evolution during allopatric speciation
    • Lande, R. 1980. Genetic variation and phenotypic evolution during allopatric speciation. Am. Nat. 116 : 463 479.
    • (1980) Am. Nat. , vol.116 , pp. 463-479
    • Lande, R.1
  • 16
    • 0024907990 scopus 로고
    • Testing macroevolutionary hypotheses with cladistic analyses: Evidence against rectangular evolution
    • and
    • Lemen, C., and P. Freeman. 1989. Testing macroevolutionary hypotheses with cladistic analyses: evidence against rectangular evolution. Evolution 43 : 1538 1554.
    • (1989) Evolution , vol.43 , pp. 1538-1554
    • Lemen, C.1    Freeman, P.2
  • 17
    • 0001199482 scopus 로고
    • Phenotypic evolution by neutral mutation
    • and
    • Lynch, M., and W. Hill. 1986. Phenotypic evolution by neutral mutation. Evolution 40 : 915 935.
    • (1986) Evolution , vol.40 , pp. 915-935
    • Lynch, M.1    Hill, W.2
  • 18
    • 0001650228 scopus 로고
    • Speciation and macroevolution
    • Mayr, E. 1982. Speciation and macroevolution. Evolution 36 : 1119 1132.
    • (1982) Evolution , vol.36 , pp. 1119-1132
    • Mayr, E.1
  • 20
    • 0033475104 scopus 로고    scopus 로고
    • Fitting macroevolutionary models to phylogenies: An example using vertebrate body sizes
    • and
    • Mooers, A., and D. Schluter. 1998. Fitting macroevolutionary models to phylogenies: an example using vertebrate body sizes. Contrib. Zool. 68 : 3 18.
    • (1998) Contrib. Zool. , vol.68 , pp. 3-18
    • Mooers, A.1    Schluter, D.2
  • 21
    • 0032887385 scopus 로고    scopus 로고
    • Using phylogenies to test macroevolutionary hypotheses of trait evolution in cranes (gruinae)
    • and
    • Mooers, A., S. Vamosi, and D. Schluter. 1999. Using phylogenies to test macroevolutionary hypotheses of trait evolution in cranes (gruinae). Am. Nat. 154 : 249 259.
    • (1999) Am. Nat. , vol.154 , pp. 249-259
    • Mooers, A.1    Vamosi, S.2    Schluter, D.3
  • 22
  • 23
    • 0033613376 scopus 로고    scopus 로고
    • Inferring the historical patterns of biological evolution
    • Pagel, M. 1999. Inferring the historical patterns of biological evolution. Nature 401 : 877 884.
    • (1999) Nature , vol.401 , pp. 877-884
    • Pagel, M.1
  • 24
    • 33646735054 scopus 로고    scopus 로고
    • Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo
    • and
    • Pagel, M., and A. Meade. 2006. Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. Am. Nat. 167 : 808 825.
    • (2006) Am. Nat. , vol.167 , pp. 808-825
    • Pagel, M.1    Meade, A.2
  • 25
    • 33749615643 scopus 로고    scopus 로고
    • Large punctuational contribution of speciation to divergence at the molecular level
    • and
    • Pagel, M., C. Venditti, and A. Meade. 2006. Large punctuational contribution of speciation to divergence at the molecular level. Science 314 : 119.
    • (2006) Science , vol.314 , pp. 119
    • Pagel, M.1    Venditti, C.2    Meade, A.3
  • 26
    • 0030463094 scopus 로고    scopus 로고
    • Bi-de: An application for simulating phylogenetic processes
    • and
    • Rambaut, A., N. Grassly, S. Nee, and P. Harvey. 1996. Bi-de: an application for simulating phylogenetic processes. Comput. Appl. Biosci. 12 : 469 471.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 469-471
    • Rambaut, A.1    Grassly, N.2    Nee, S.3    Harvey, P.4
  • 27
    • 84972363453 scopus 로고
    • Phyletic gradualism vs. punctuated equilibrium, applicability of neotological data
    • Ricklefs, R. 1980. Phyletic gradualism vs. punctuated equilibrium, applicability of neotological data. Paleobiology 6 : 271 275.
    • (1980) Paleobiology , vol.6 , pp. 271-275
    • Ricklefs, R.1
  • 30
    • 0000453741 scopus 로고
    • Is a new evolutionary synthesis necessary
    • and
    • Stebbins, G., and F. Ayala. 1981. Is a new evolutionary synthesis necessary Science 213 : 967 971.
    • (1981) Science , vol.213 , pp. 967-971
    • Stebbins, G.1    Ayala, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.