Genealogical relationship between pedigree and microsatellite information and analysis of genetic structure of a highly inbred Japanese black cattle strain

Asian-Australasian Journal of Animal Sciences

Volumn 17, Issue 10, 2004, Pages 1355-1359

  Sasazaki, S ^a   Honda, T ^a   Fukushima, M ^a,b   Oyama, K ^a   Mannen, H ^a   Mukai, F ^a   Tsuji, S ^a  

^a KOBE UNIVERSITY   (Japan)

^b Hyogo Prefectural Hokubu Agricultural Technology Institute   (Japan)

Author keywords

Japanese Black Cattle; Microsatellite; Phylogenetic Tree

Indexed keywords

BOS TAURUS; MAMMALIA; TRANSPOSONS;

EID: 5444261352     PISSN: 10112367     EISSN: None     Source Type: Journal    
DOI: 10.5713/ajas.2004.1355     Document Type: Article

References (30)

1. Ajmone-Marsan, P., R. Negrini, E. Milanesi, R. Bozzi, I. J. Nijman, J. B. Buntjer, A. Valentini and J. A. Lenstra. 2002. Genetic distances within and across cattle breeds as indicated by biallelic AFLP markers. Anim. Genet. 33:280-286.
2. Arranz, J. J., Y. Bayon and F. San Primitivo. 1996. Comparison of protein markers and microsatellites in differentiation of cattle poplations. Anim. Genet. 27:415-419.
3. Blot, S. C., J. L. Williams and C. S. Haley. 1998. Genetic variation within the Hereford breed of cattle. Anim. Genet. 29:202-211.
4. Cornuet, J. M. and G. Luikart. 1996. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001-2014.
5. Di Rienzo, A., A. C. Peterson, J. C. Garza, A. M. Valdes, M. Slatkin and N. B. Freimer. 1994. Mutational processes of simple-sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA 91(8):3166-3170.
6. Excoffier, L., P. E. Smouse and J. M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
7. Hanslik, S., B. Harr, G. Brem and C. Schlotterer. 2000. Microsatellite analysis reveals substantial genetic differentiation between contemporary New World and Old World Holstein Friesian populations. Anim. Genet. 31(1):31-38.
8. Hirano, T., S. Nakane, K. Mizosita, H. Yamakuchi, M. Inoue, T. Watanabe, W. Barendse and Y. Sugimoto. 1996. Characterization of 42 highli polymorphic bovine microsatellite makers. Anim. Genet. 27:365-368.
9. Honda, T., T. Nomura, M. Fukushima and F. Mukai. 2001. Genetic diversity of a closed population of Japanese Black Cattle in Hyogo prefecture. Anim. Sci. J. 72:378-385.
10. Kumar, S., K. Tamura, I. B. Jakobsen and M. Nei. 2001. MEGA2:Molecular Evolutionary Genetics Analysis software. Arizona State University, Tempe, Arizona, USA.
11. Lee, E. J., H. Mannen, M. Mizutani and S. Tsuji. 2000. Genetic Analysis of Chicken Lines by Amplified Fragment Length Polymorphism (AFLP), Anim. Sci. J. 71(3):231-238.
12. Lee, E. J., K. Yoshizawa, H. Mannen, H. Kikuchi, T. Kikuchi, M. Mizutani and S. Tsuji. 2002. Localization of the muscular dystrophy AM locus using a chicken linkage map constructed with the Kobe University resource family. Anim. Genet. 33:42-48.
13. Luikart, G. 1997. Usefulness of molecular markers for detecting population bottlenecks and monitoring genetic change. Ph. D. Thesis. University of Montana, Missoula, USA.
14. Mannen, H., S. Tsuji, N. Goto and K. Fukuta. 1993a. Identification of inbred strains of mice and genetic relationships between strains as assessed by DNA fingerprinting. Exp. Anim. 42(2):169-173.
15. Mannen, H., S. Tsuji, F. Mukai, N. Goto and S. Ohtagaki. 1993b. Genetic similarity using DNA fingerprinting in cattle to determine relationship coefficient. J. Hered. 84(3):166-169.
16. Mannen, H., S. Tsuji, R. T. Loftus and D. G. Bradley. 1998. Mitochondrial DNA variation and evolution in Japanese Black cattle (Bos taunts). Genetics 150:1169-1175.
17. Marshall, T. C., J. Slate, L. E. B. Kruuk and J. M. Pemberton. 1998. Statistical confidence for likelihood-based paternity inference in natural populations. Mol. Ecol. 7:639-655.
18. Martin-Burriel, I., E. Garcia-Muro and P. Zaragoza. 1999. Genetic diversity analysis of six Spanish native cattle breeds using microsatellites. Anim. Genet. 30:177-182.
19. Mukai, F., S. Tsuji, K. Fukazawa, S. Ohtagaki and Y. Nambu. 1989. History and poplation structure of a closed strain of Japanese Black Cattle. J. Anim. Breed. Genet. 106:254-264.
20. Nei, M. 1972. Genetic Distance between populations. American Naturalist 106:283-292.
21. Nomura, T., T. Honda and F. Mukai. 2001. Inbreeding and effective population size of Japanese Black cattle. Anim. Sci. 79:366-370.
22. Oyama, K., T. Katsuta, K. Anada and F. Mukai. 2002. Heritability and repeatability estimates for reproductive traits of Japanese Black cows. Asian-Aust. J. Anim. Sci. 15:1680-1685.
23. Peelman, L. J., F. Mortiaux, A. Van Zeveren, A. Dansercoer, G. Mommens, F. Coopman, Y. Bouquet, A. Burny, R. Renaville and D. Portetelle. 1998. Evaluation of the genetic variability of 23 bovine microsatellite markers in four Belgian cattle breeds. Anim. Genet. 29:161-167.
24. Ritz, L. R., M-L. Glowatzki-Mullis, D. E. MacHugh and C. Gaillard. 2000. Phylogenetic analysis of the tribe Bovini using microsatellites. Anim. Genet. 31:178-185.
25. Sasazaki, S., E. J. Lee, H. Mannen, T. Kunieda, T. Sakurai, K. Yamauchi, J. S. Yeo and S. Tsuji. 2001. Phylogenetic analysis of five beef cattle breeds using AFLP marker. Anim. Sci. J. 72(2):1-5.
26. Schneider, S., J. M. Kueffer, D. Roessli and L. Excoffier. 1997. Arlequin ver. 1.1: A software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
27. Sneath, P. H. A and R. R. Sokal. 1973. Numerical Taxonomy. W.H. Freedman % Company, San Francisco, CA.
28. Takezaki, N. and M. Nei. 1996. Genetic distances and reconstruction of phylogenetic tree from microsatellite DNA. Genetics 144:389-399.
29. Tsuji, S., F. Mukai, N. Chihara, S. Ohtagaki and Y. Nambu. 1990. Changes of gene frequencies at some polymorphic loci in a closed herd of Japanese Black Cattle. J. Anim. Breed. Genet. 107:444-451.
30. Toro, M., C. Barragan, C. Ovilo, J. Rodriganez, C. Rodriganez and L. Silio. 2002. Estimation of coancestry in Iberian pigs using molecular markers. Conservation Genetics 3:309-320.