Target genes of the developmental regulator PRIB of the mushroom Lentinula edodes

Bioscience, Biotechnology and Biochemistry

Volumn 68, Issue 9, 2004, Pages 1898-1905

  Miyazaki, Yasumasa ^a,b   Sakuragi, Yuta ^a   Yamazaki, Takashi ^a   Shishido, Kazuo ^a  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^b Forestry and Forest Products Research Institute   (Japan)

Author keywords

Fruiting body formation; Genomic binding site cloning; In situ RNA RNA hybridization; Northern blotting; Zn(II)2CYs6 DNA binding motif

Indexed keywords

AMINO ACIDS; CLONING; ENZYMES;

BINDING-SITE CLONING; FRUITING BODY; GENE ENCODING; TARGET GENES;

GENES;

DNA BINDING PROTEIN; FUNGAL DNA;

ARTICLE; BINDING SITE; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; LENTINUS EDODES; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROMOTER REGION;

BASE SEQUENCE; BINDING SITES; DNA, FUNGAL; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, FUNGAL; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS); SEQUENCE ANALYSIS, DNA; SHIITAKE MUSHROOMS;

BASIDIOMYCOTA; FUNGI; LENTINULA; LENTINULA EDODES; LENTINUS; MYXOGASTRIA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 5444240620     PISSN: 09168451     EISSN: None     Source Type: Journal    
DOI: 10.1271/bbb.68.1898     Document Type: Article

References (27)

1. Endo, H., Kajiwara, S., Tsunoka, O., and Shishido, K., A novel cDNA, priBc, encoding a protein with a Zn(II)2Cys6 zinc-cluster DNA-binding motif, derived from the basidiomycete Lentinus edodes. Gene, 139, 117-121 (1994).
2. Vallee, B. L., Coleman, J. E., and Auld, D. S., Zinc fingers, zinc clusters, and zinc twists in DNA-binding protein domains. Proc. Natl. Acad. Sci. U.S.A., 88, 999-1003 (1991).
3. Landschulz, W. H., Johnson, P. F., and McKnight, S. L., The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins. Science, 240, 1759-1764 (1988).
4. Laughon, A., and Gesteland, R. F., Primary structure of the Saccharomyces cerevisiae GAL4 gene. Mol. Cell. Biol., 4, 260-267 (1984).
5. Baum, J. A., Geever, R., and Giles, N. H., Expression of qa-1F activator protein: identification of upstream binding sites in the qa gene cluster and localization of the DNA-binding domain. Mol. Cell. Biol., 7, 1256-1266 (1987).
6. Todd, R. B., and Andrianopoulos, A., Evolution of a fungal regulatory gene family, the Zn(II)2Cys6 binuclear cluster DNA binding motif. Fungal Genet. Biol., 21, 388-405 (1997).
7. Montminy, M. R., and Bilezikjian, L. M., Binding of a nuclear protein to the cyclic AMP response element of the somatostatin gene. Nature, 328, 175-178 (1987).
8. Maki, Y., Bos, T. J., Davis, C., Starbuck, M., and Vogt, P. K., Avian sarcoma virus 17 carries the jun oncogene. Proc. Natl. Acad. Sci. U.S.A., 84, 2848-2852 (1987).
9. Van Beveren, C., Van Straaten, F., Curran, T., Muller, R., and Verma, I. M., Analysis of FBJ-MuSV provirus and c-fos (mouse) gene reveals that viral and cellular fos gene products have different carboxy termini. Cell, 32, 1241-1255 (1983).
10. Boulikas, T., Putative nuclear localization signals (NLS) in protein transcription factors. J. Cell. Biochem., 55, 32-58 (1994).
11. Lee, K. A., Transcriptional regulation by cAMP. Curr. Opin. Cell Biol., 3, 953-959 (1991).
12. Miyazaki, Y., Molecular biological and biochemical studies on the DNA-binding proteins involved in fruiting development of the basidiomycete Lentinus edodes. Ph. D. Thesis, Tokyo Institute of Technology (1998).
13. Pollock, R., and Treisman, R., A sensitive method for the determination of protein-DNA binding specificities. Nucleic Acids Res., 18, 6197-6204 (1990).
14. Miyazaki, Y., Tsunoka, O., and Shishido, K., Determination of the DNA-binding sequences of the Zn(II)2Cys6 zinc-cluster-containing PRIB protein, derived from the basidiomycete Lentinus edodes gene. J. Biochem., 122, 1088-1091 (1997).
15. Kaneko, S., Miyazaki, Y., Yasuda, T., and Shishido, K., Cloning, sequence analysis and expression of the basidiomycete Lentinus edodes gene uck1, encoding UMP-CMP kinase, the homologue of Saccharomyces cerevisae URA6 gene. Gene, 211, 259-266 (1998).
16. Inoue, S., Kondo, S., Hashimoto, M., Kondo, T., and Muramatsu, M., Isolation of estrogen receptor-binding sites in human genomic DNA. Nucleic Acids Res., 19, 4091-4096 (1991).
17. Thompson, G. M., Cano, V. S. P., and Valentini, S. R., Mapping eIF5A binding sites for Dys1 and Lia1: in vitro evidence for regulation of eIF5A hypusination. FEBS Lett., 555, 464-468 (2003).
18. Katayose, Y., Kajiwara, S., and Shishido, K., The basidiomycete Lentinus edodes linear mitochondrial DNA plasmid contains a segment exhibiting a high autonomously replicating sequence activity in Saccharomyces cerevisiae. Nucleic Acids Res., 18, 1395-1400 (1990).
19. Sanger, F., Nicklen, S., and Coulson, A. R., DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. U.S.A., 74, 5463-5467 (1977).
20. Sambrook, J., Fritsch, E. F., and Maniatis, T., Molecular cloning: a laboratory manual, 2nd edn., Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. (1989).
21. Han, J. H., Stratowa, C., and Rutter, W. J., Isolation of full-length putative rat lysophospholipase cDNA using improved methods for mRNA isolation and cDNA cloning. Biochemistry, 26, 1617-1625 (1987).
22. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K., "Current Protocols in Molecular Biology", Greene Publishing Associates and Wiley-Interscience, N.Y., pp. 1.11.3-1.11.4 (1987).
23. Hori, K., Kajiwara, S., Saito, T., Miyazawa, H., Katayose, Y., and Shishido, K., Cloning, sequence analysis and transcriptional expression of a ras gene of the edible basidiomycete Lentinus edodes. Gene, 105, 91-96 (1991).
24. Kaneko, S., and Shishido, K., Cloning and sequence analysis of the basidiomycete Lentinus edodes ribonucleotide reductase small subunit cDNA and expression of a corresponding gene in L. edodes. Gene, 262, 43-50 (2001).
25. Kaneko, S., Molecular and cellular biological studies on two nucleotide biosynthesis genes and their expression products of the basidiomycete Lentinus edodes. Ph.D. Thesis, Tokyo Institute of Technology (1999).
26. Sukegawa, J., and Blobel, G., A nuclear pore complex protein that contains zinc finger motifs, binds DNA, and faces the nucleoplasm. Cell, 72, 29-38 (1993).
27. Burke, D., Dawson, D., and Stearns, T., Methods in yeast genetics, A Cold Spring Harbor Laboratory Course Manual, 2000 Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. (2000).