-
1
-
-
33749462736
-
The structural and functional role of RNA in icosahedral virus assembly
-
Schneemann A. The structural and functional role of RNA in icosahedral virus assembly. Annu. Rev. Microbiol. 60 (2006) 51-67
-
(2006)
Annu. Rev. Microbiol.
, vol.60
, pp. 51-67
-
-
Schneemann, A.1
-
3
-
-
0023053991
-
Structure and assembly of turnip crinkle virus: II. Mechanism of reassembly in vitro
-
Sorger P.K., Stockley P.G., and Harrison S.C. Structure and assembly of turnip crinkle virus: II. Mechanism of reassembly in vitro. J. Mol. Biol. 191 (1986) 639-658
-
(1986)
J. Mol. Biol.
, vol.191
, pp. 639-658
-
-
Sorger, P.K.1
Stockley, P.G.2
Harrison, S.C.3
-
5
-
-
0034715825
-
Mechanism of capsid assembly for an icosahedral plant virus
-
Zlotnick A., Aldrich R., Johnson J.M., Ceres P., and Young M.J. Mechanism of capsid assembly for an icosahedral plant virus. Virology 277 (2000) 450-456
-
(2000)
Virology
, vol.277
, pp. 450-456
-
-
Zlotnick, A.1
Aldrich, R.2
Johnson, J.M.3
Ceres, P.4
Young, M.J.5
-
7
-
-
0027960331
-
Crystal structure of a bacteriophage-RNA coat protein-operator complex
-
Valegard K., Murray J.B., Stockley P.G., Stonehouse N.J., and Liljas L. Crystal structure of a bacteriophage-RNA coat protein-operator complex. Nature 371 (1994) 623-626
-
(1994)
Nature
, vol.371
, pp. 623-626
-
-
Valegard, K.1
Murray, J.B.2
Stockley, P.G.3
Stonehouse, N.J.4
Liljas, L.5
-
9
-
-
0031213649
-
The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions
-
Valegard K., Murray J.B., Stonehouse N.J., vandenWorm S., Stockley P.G., and Liljas L. The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions. J. Mol. Biol. 270 (1997) 724-738
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 724-738
-
-
Valegard, K.1
Murray, J.B.2
Stonehouse, N.J.3
vandenWorm, S.4
Stockley, P.G.5
Liljas, L.6
-
10
-
-
0000694197
-
Single-stranded RNA bacteriophages
-
Calendar R. (Ed), Plenum Press, New York, NY
-
Van Duin J. Single-stranded RNA bacteriophages. In: Calendar R. (Ed). The Bacteriophages (1988), Plenum Press, New York, NY 117-167
-
(1988)
The Bacteriophages
, pp. 117-167
-
-
Van Duin, J.1
-
11
-
-
33644844187
-
Structural basis of RNA binding discrimination between bacteriophages Q beta and MS2
-
Horn W.T., Tars K., Grahn E., Heigstrand C., Baron A.J., Lago H., et al. Structural basis of RNA binding discrimination between bacteriophages Q beta and MS2. Structure 14 (2006) 487-495
-
(2006)
Structure
, vol.14
, pp. 487-495
-
-
Horn, W.T.1
Tars, K.2
Grahn, E.3
Heigstrand, C.4
Baron, A.J.5
Lago, H.6
-
12
-
-
34247604476
-
A simple, RNA-mediated allosteric switch controls the pathway to formation of a T = 3 viral capsid
-
Stockley P.G., Rolfsson O., Thompson G.S., Basnak G., Francese S., Stonehouse N.J., et al. A simple, RNA-mediated allosteric switch controls the pathway to formation of a T = 3 viral capsid. J. Mol. Biol. 369 (2007) 541-552
-
(2007)
J. Mol. Biol.
, vol.369
, pp. 541-552
-
-
Stockley, P.G.1
Rolfsson, O.2
Thompson, G.S.3
Basnak, G.4
Francese, S.5
Stonehouse, N.J.6
-
13
-
-
37349114868
-
The three-dimensional structure of genomic RNA in bacteriophage MS2: implications for assembly
-
Toropova K., Basnak G., Twarock R., Stockley P.G., and Ranson N.A. The three-dimensional structure of genomic RNA in bacteriophage MS2: implications for assembly. J. Mol. Biol. 375 (2008) 824-836
-
(2008)
J. Mol. Biol.
, vol.375
, pp. 824-836
-
-
Toropova, K.1
Basnak, G.2
Twarock, R.3
Stockley, P.G.4
Ranson, N.A.5
-
14
-
-
0016365759
-
Direct physical evidence for secondary structure in an isolated fragment of R17 bacteriophage messenger-RNA
-
Gralla J., Steitz J.A., and Crothers D.M. Direct physical evidence for secondary structure in an isolated fragment of R17 bacteriophage messenger-RNA. Nature 248 (1974) 204-208
-
(1974)
Nature
, vol.248
, pp. 204-208
-
-
Gralla, J.1
Steitz, J.A.2
Crothers, D.M.3
-
15
-
-
0029024877
-
Proton NMR and structural features of a 24-nucleotide RNA hairpin
-
Borer P.N., Lin Y., Wang S., Roggenbuck M.W., Gott J.M., Uhlenbeck O.C., and Pelczer I. Proton NMR and structural features of a 24-nucleotide RNA hairpin. Biochemistry 34 (1995) 6488-6503
-
(1995)
Biochemistry
, vol.34
, pp. 6488-6503
-
-
Borer, P.N.1
Lin, Y.2
Wang, S.3
Roggenbuck, M.W.4
Gott, J.M.5
Uhlenbeck, O.C.6
Pelczer, I.7
-
16
-
-
0025300971
-
Use of synthetic oligoribonucleotides to probe RNA-protein interactions in the MS2 translational operator complex
-
Talbot S.J., Goodman S., Bates S.R.E., Fishwick C.W.G., and Stockley P.G. Use of synthetic oligoribonucleotides to probe RNA-protein interactions in the MS2 translational operator complex. Nucleic Acids Res. 18 (1990) 3521-3528
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 3521-3528
-
-
Talbot, S.J.1
Goodman, S.2
Bates, S.R.E.3
Fishwick, C.W.G.4
Stockley, P.G.5
-
17
-
-
0028205651
-
A general purification procedure for chemically synthesized oligoribonucleotides
-
Murray J.B., Collier A.K., and Arnold J.R.P. A general purification procedure for chemically synthesized oligoribonucleotides. Anal. Biochem. 218 (1994) 177-184
-
(1994)
Anal. Biochem.
, vol.218
, pp. 177-184
-
-
Murray, J.B.1
Collier, A.K.2
Arnold, J.R.P.3
-
18
-
-
0020958704
-
Interaction of R17 coat protein with its RNA-binding site for translational repression
-
Uhlenbeck O.C., Carey J., Romaniuk P.J., Lowary P.T., and Beckett D. Interaction of R17 coat protein with its RNA-binding site for translational repression. J. Biomol. Struct. Dyn. 1 (1983) 539-552
-
(1983)
J. Biomol. Struct. Dyn.
, vol.1
, pp. 539-552
-
-
Uhlenbeck, O.C.1
Carey, J.2
Romaniuk, P.J.3
Lowary, P.T.4
Beckett, D.5
-
19
-
-
0035793215
-
Probing the kinetics of formation of the bacteriophage MS2 translational operator complex: identification of a protein conformer unable to bind RNA
-
Lago H., Parrott A.M., Moss T., Stonehouse N.J., and Stockley P.G. Probing the kinetics of formation of the bacteriophage MS2 translational operator complex: identification of a protein conformer unable to bind RNA. J. Mol. Biol. 305 (2001) 1131-1144
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 1131-1144
-
-
Lago, H.1
Parrott, A.M.2
Moss, T.3
Stonehouse, N.J.4
Stockley, P.G.5
-
20
-
-
0034650498
-
RNA aptamers for the MS2 bacteriophage coat protein and the wild-type RNA operator have similar solution behaviour
-
Parrott A.M., Lago H., Adams C.J., Ashcroft A.E., Stonehouse N.J., and Stockley P.G. RNA aptamers for the MS2 bacteriophage coat protein and the wild-type RNA operator have similar solution behaviour. Nucleic Acids Res. 28 (2000) 489-497
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 489-497
-
-
Parrott, A.M.1
Lago, H.2
Adams, C.J.3
Ashcroft, A.E.4
Stonehouse, N.J.5
Stockley, P.G.6
-
21
-
-
33751271800
-
-
Oxford University Press, Oxford, UK
-
Gell C., Brockwell D.J., and Smith D.A. Handbook of Single Molecule Fluorescence Spectroscopy (2006), Oxford University Press, Oxford, UK
-
(2006)
Handbook of Single Molecule Fluorescence Spectroscopy
-
-
Gell, C.1
Brockwell, D.J.2
Smith, D.A.3
-
22
-
-
33748460691
-
Urea-induced unfolding of the immunity protein Im9 monitored by spFRET
-
Tezuka-Kawakami T., Gell C., Brockwell D.J., Radford S.E., and Smith D.A. Urea-induced unfolding of the immunity protein Im9 monitored by spFRET. Biophys. J. 91 (2006) L42-L44
-
(2006)
Biophys. J.
, vol.91
-
-
Tezuka-Kawakami, T.1
Gell, C.2
Brockwell, D.J.3
Radford, S.E.4
Smith, D.A.5
-
23
-
-
8744318698
-
Preferential interactions of glycine betaine and of urea with DNA: implications for DNA hydration and for effects of these solutes on DNA stability
-
Hong J., Capp M.W., Anderson C.F., Saecker R.M., Felitsky D.J., Anderson M.W., and Record M.T. Preferential interactions of glycine betaine and of urea with DNA: implications for DNA hydration and for effects of these solutes on DNA stability. Biochemistry 43 (2004) 14744-14758
-
(2004)
Biochemistry
, vol.43
, pp. 14744-14758
-
-
Hong, J.1
Capp, M.W.2
Anderson, C.F.3
Saecker, R.M.4
Felitsky, D.J.5
Anderson, M.W.6
Record, M.T.7
-
24
-
-
0033444727
-
Ratiometric measurement and identification of single diffusing molecules
-
Dahan M., Deniz A.A., Ha T.J., Chemla D.S., Schultz P.G., and Weiss S. Ratiometric measurement and identification of single diffusing molecules. Chem. Phys. 247 (1999) 85-106
-
(1999)
Chem. Phys.
, vol.247
, pp. 85-106
-
-
Dahan, M.1
Deniz, A.A.2
Ha, T.J.3
Chemla, D.S.4
Schultz, P.G.5
Weiss, S.6
-
25
-
-
0037126290
-
Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy
-
Schuler B., Lipman E.A., and Eaton W.A. Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy. Nature 419 (2002) 743-747
-
(2002)
Nature
, vol.419
, pp. 743-747
-
-
Schuler, B.1
Lipman, E.A.2
Eaton, W.A.3
-
26
-
-
33751349660
-
Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments
-
Nir E., Michalet X., Hamadani K.M., Laurence T.A., Neuhauser D., Kovchegov Y., and Weiss S. Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments. J. Phys. Chem. B 110 (2006) 22103-22124
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 22103-22124
-
-
Nir, E.1
Michalet, X.2
Hamadani, K.M.3
Laurence, T.A.4
Neuhauser, D.5
Kovchegov, Y.6
Weiss, S.7
-
28
-
-
36549083651
-
RNA catalysis: ribozymes, ribosomes, and riboswitches
-
Strobel S.A., and Cochrane J.C. RNA catalysis: ribozymes, ribosomes, and riboswitches. Curr. Opin. Chem. Biol. 11 (2007) 636-643
-
(2007)
Curr. Opin. Chem. Biol.
, vol.11
, pp. 636-643
-
-
Strobel, S.A.1
Cochrane, J.C.2
-
29
-
-
39149139307
-
Small RNAs: keeping stem cells in line
-
Stadler B.M., and Ruohola-Baker H. Small RNAs: keeping stem cells in line. Cell 132 (2008) 563-566
-
(2008)
Cell
, vol.132
, pp. 563-566
-
-
Stadler, B.M.1
Ruohola-Baker, H.2
-
30
-
-
0042925420
-
Single-molecule transition-state analysis of RNA folding
-
Bokinsky G., Rueda D., Misra V.K., Rhodes M.M., Gordus A., Babcock H.P., et al. Single-molecule transition-state analysis of RNA folding. Proc. Natl Acad. Sci. U. S. A. 100 (2003) 9302-9307
-
(2003)
Proc. Natl Acad. Sci. U. S. A.
, vol.100
, pp. 9302-9307
-
-
Bokinsky, G.1
Rueda, D.2
Misra, V.K.3
Rhodes, M.M.4
Gordus, A.5
Babcock, H.P.6
-
31
-
-
3042733138
-
Freely diffusing single hairpin ribozymes provide insights into the role of secondary structure and partially folded states in RNA folding
-
Pljevaljcic G., Millar D.P., and Deniz A.A. Freely diffusing single hairpin ribozymes provide insights into the role of secondary structure and partially folded states in RNA folding. Biophys. J. 87 (2004) 457-467
-
(2004)
Biophys. J.
, vol.87
, pp. 457-467
-
-
Pljevaljcic, G.1
Millar, D.P.2
Deniz, A.A.3
-
32
-
-
23744470902
-
Single-molecule RNA folding
-
Bokinsky G., and Zhuang X.W. Single-molecule RNA folding. Acc. Chem. Res. 38 (2005) 566-573
-
(2005)
Acc. Chem. Res.
, vol.38
, pp. 566-573
-
-
Bokinsky, G.1
Zhuang, X.W.2
-
33
-
-
40249094662
-
Loop dependence of the stability and dynamics of nucleic acid hairpins
-
Kuznetsov S.V., Ren C.-C., Woodson S.A., and Ansari A. Loop dependence of the stability and dynamics of nucleic acid hairpins. Nucleic Acids Res. 36 (2007) 1098-1112
-
(2007)
Nucleic Acids Res.
, vol.36
, pp. 1098-1112
-
-
Kuznetsov, S.V.1
Ren, C.-C.2
Woodson, S.A.3
Ansari, A.4
-
34
-
-
0016313242
-
Messenger-RNA is expected to form stable secondary structures
-
Gralla J., and Delisi C. Messenger-RNA is expected to form stable secondary structures. Nature 248 (1974) 330-332
-
(1974)
Nature
, vol.248
, pp. 330-332
-
-
Gralla, J.1
Delisi, C.2
-
35
-
-
0029053759
-
Probing sequence-specific RNA recognition by the bacteriophage-MS2 coat protein
-
Stockley P.G., Stonehouse N.J., Murray J.B., Goodman S.T.S., Talbot S.J., Adams C.J., et al. Probing sequence-specific RNA recognition by the bacteriophage-MS2 coat protein. Nucleic Acids Res. 23 (1995) 2512-2518
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2512-2518
-
-
Stockley, P.G.1
Stonehouse, N.J.2
Murray, J.B.3
Goodman, S.T.S.4
Talbot, S.J.5
Adams, C.J.6
-
36
-
-
0031788059
-
Crystal structures of a series of RNA aptamers complexed to the same protein target
-
Rowsell S., Stonehouse N.J., Convery M.A., Adams C.J., Ellington A.D., Hirao I., et al. Crystal structures of a series of RNA aptamers complexed to the same protein target. Nat. Struct. Biol. 5 (1998) 970-975
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 970-975
-
-
Rowsell, S.1
Stonehouse, N.J.2
Convery, M.A.3
Adams, C.J.4
Ellington, A.D.5
Hirao, I.6
-
37
-
-
0034549059
-
Deletion of a single hydrogen bonding atom from the MS2 RNA operator leads to dramatic rearrangements at the RNA-coat protein interface
-
Grahn E., Stonehouse N.J., Adams C.J., Fridborg K., Beigelman L., Matulic-Adamic J., et al. Deletion of a single hydrogen bonding atom from the MS2 RNA operator leads to dramatic rearrangements at the RNA-coat protein interface. Nucleic Acids Res. 28 (2000) 4611-4616
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4611-4616
-
-
Grahn, E.1
Stonehouse, N.J.2
Adams, C.J.3
Fridborg, K.4
Beigelman, L.5
Matulic-Adamic, J.6
-
38
-
-
0032901053
-
Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements
-
Grahn E., Stonehouse N.J., Murray J.B., Van den Worm S., Valegard K., Fridborg K., et al. Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements. RNA 5 (1999) 131-138
-
(1999)
RNA
, vol.5
, pp. 131-138
-
-
Grahn, E.1
Stonehouse, N.J.2
Murray, J.B.3
Van den Worm, S.4
Valegard, K.5
Fridborg, K.6
-
39
-
-
0031951789
-
Crystal structure of an RNA aptamer protein complex at 2.8 angstrom resolution
-
Convery M.A., Rowsell S., Stonehouse N.J., Ellington A.D., Hirao I., Murray J.B., et al. Crystal structure of an RNA aptamer protein complex at 2.8 angstrom resolution. Nat. Struct. Biol. 5 (1998) 133-139
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 133-139
-
-
Convery, M.A.1
Rowsell, S.2
Stonehouse, N.J.3
Ellington, A.D.4
Hirao, I.5
Murray, J.B.6
-
40
-
-
0033616580
-
Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Forster distance dependence and subpopulations
-
Deniz A.A., Dahan M., Grunwell J.R., Ha T.J., Faulhaber A.E., Chemla D.S., et al. Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Forster distance dependence and subpopulations. Proc. Natl Acad. Sci. U. S. A. 96 (1999) 3670-3675
-
(1999)
Proc. Natl Acad. Sci. U. S. A.
, vol.96
, pp. 3670-3675
-
-
Deniz, A.A.1
Dahan, M.2
Grunwell, J.R.3
Ha, T.J.4
Faulhaber, A.E.5
Chemla, D.S.6
-
41
-
-
16844365511
-
Structure, recognition properties, and flexibility of the DNA.RNA hybrid
-
Noy A., Pérez A., Márquez M., Luque F.J., and Orozco M. Structure, recognition properties, and flexibility of the DNA.RNA hybrid. J. Am. Chem. Soc. 127 (2005) 4910-4920
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 4910-4920
-
-
Noy, A.1
Pérez, A.2
Márquez, M.3
Luque, F.J.4
Orozco, M.5
-
42
-
-
33646200032
-
Exploring the complex folding kinetics of RNA hairpins: II. Effect of square, length, and misfolded states
-
Zhang W.B., and Chen S.J. Exploring the complex folding kinetics of RNA hairpins: II. Effect of square, length, and misfolded states. Biophys. J. 90 (2006) 778-787
-
(2006)
Biophys. J.
, vol.90
, pp. 778-787
-
-
Zhang, W.B.1
Chen, S.J.2
-
43
-
-
1342327718
-
Linker phosphoramidite reagents for the attachment of the first nucleoside to underivatized solid-phase supports
-
Pon R.T., and Yu S.Y. Linker phosphoramidite reagents for the attachment of the first nucleoside to underivatized solid-phase supports. Nucleic Acids Res. 32 (2004) 623-631
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 623-631
-
-
Pon, R.T.1
Yu, S.Y.2
-
44
-
-
0028913136
-
Fluorescence resonance energy transfer
-
Selvin P.R. Fluorescence resonance energy transfer. Methods Enzymol. 246 (1995) 300-334
-
(1995)
Methods Enzymol.
, vol.246
, pp. 300-334
-
-
Selvin, P.R.1
|