Genomic sequence derived simple sequence repeats markers: A case study with Medicago spp.

Electronic Journal of Biotechnology

Volumn 5, Issue 3, 2002, Pages 233-242

  Mahalakshmi, Viswanathan ^a   Aparna, P ^a   Ramadevi, S ^a   Ortiz, Rodomiro ^b,c  

^a INTERNATIONAL CROPS RESEARCH INSTITUTE FOR THE SEMI ARID TROPICS ICRISAT   (India)

^b INTERNATIONAL INSTITUTE OF TROPICAL AGRICULTURE   (Nigeria)

^c Carolyn House ^*  (United Kingdom)

Author keywords

Bioinformatics; Genetic markers; Repeat motifs; Simple sequence repeats; SSR

Indexed keywords

EID: 54249132255     PISSN: 07173458     EISSN: 07173458     Source Type: Journal    
DOI: 10.2225/vol5-issue3-fulltext-2     Document Type: Article

References (12)

1. BARRY, Gerard F. The use of the Monsanto draft rice genome sequence research. Plant Physiology, 2001, vol. 125, no. 3, p. 1164-1165.
2. BENSON, G. Tandem repeats finder: a program to analyse DNA sequences. Nucleic Acids Research, 1999, vol. 27, no. 2, p. 573-580.
3. CARDLE, Linda; RAMSAY, Luke; MILBOURNE, Dan; MACAULAY, Malcom; MARSHALL, David and WAUGH, Robbie. Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics, 2000, vol. 156, no. 2, p. 847-54.
4. KATTI, Mukund V.; SAMI-SUBBU, R.; RANJEKAR, Prabhakar K. and GUPTA, Vidya S. Amino acid repeat patterns in protein sequences: Their diversity and structural functional implications. Protein Science, 2000, vol. 9, no. 6, p. 1203-1209.
5. LENCH, N.J.; NORRIS, A; BAILEY, A.; BOOTH, A. and MARKHAM, A.F. Vectoreete PCR isolation of mircosatellite repeat sequences using anchored dinucleotide primers. Nucleic Acids Research, 1996, vol. 24, no. 11, p. 2190-2191.
6. MACAS, Jir; MESZAROS, Tibor and NOUZOVA, Marcela. PlantSat: a specialized database for plant satellite repeats. Bioinformatics, 2002, vol. 18, no. 1, p. 28-35.
7. MAHALAKSHMI, V. and ORTIZ, R. Plant genomics and agriculture: From model organisms to crops, the role of data mining for gene discovery. EJB Electronic Journal of Biotechnology [online]. 15 December 2001, vol. 4, no. 3 [cited December 2001]. Available from Internet: http://www.ejb.org/content/vol4/issue3/ full/5/index.html. ISSN 07173458.
8. PEARSON, Christopher E. and SINDEN, Richard R. Trinucleotide repeat DNA structures: Dynamic mutations from dynamic DNA. Current Opinion in Structural Biology, 1998, vol. 8, no. 3, p. 321-330.
9. SENIOR, M. Lynn and HEUN, Manfred. Mapping maize microsatellites and polymerase chain reaction confirmation of the targeted repeats using a CT primer. Genome, October 1993, vol. 36, no. 5, p. 884-889.
10. THOQUET, Philippe; GHÉRARDI, Michele; JOURNET, Etienne-Pascal; KERESZT, Attila; ANÉ, Jean-Michel; PROSPERI, Jean-Marie and HUGUET, Thierry. The molecular genetic linkage map of the model legume Medicago truncatula: an essential tool for comparative legume genomics and the isolation of agronomically important genes. BioMed Central Plant Physiology [online]. 2 January 2002, vol. 2 [cited July 2002]. Available from Internet: http://www.biomedcentral.com/1471-2229/2/1/. ISSN 1471-2229.
11. TEMNYKH, Svetlana; DECLERCK, Genevieve; LUKASHOVA, Angelika; LIPOVICH, Leonard; CARTINHOUR, Samuel and MCCOUCH, Susan. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Research, 2001, vol. 11, no. 8, p. 1441-52.
12. YUAN, Qiaoping; QUACKENBUSH, John; SULTANA, Razvan; PERTEA, Mihaela; SALZBERG, Steven L. and BUELL, C. Robin. Rice bioinformatics. Analysis of rice sequence data and leveraging the data to other plant species. Plant Physiology, 2001, vol. 125, no. 3, p. 1166-1174.