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Volumn 48, Issue 9, 2008, Pages 1833-1839

Accurate and interpretable computational modeling of chemical mutagenicity

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CHEMISTRY;

EID: 54249123263     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci800094a     Document Type: Article
Times cited : (13)

References (28)
  • 1
    • 84958472483 scopus 로고
    • On the Connection Between Chemical Constitution and Physiologic Action. Part 1. On the Physiological Action of Salts of the Ammonium Bases, Derived from Strychnia, Brucia, Thebia, Codeia, Morphia and Nicotia
    • Crum Brown, A.; Fraser, T. On the Connection Between Chemical Constitution and Physiologic Action. Part 1. On the Physiological Action of Salts of the Ammonium Bases, Derived from Strychnia, Brucia, Thebia, Codeia, Morphia and Nicotia. Trans. R. Soc. Edinburgh 1868, 25, 151-203.
    • (1868) Trans. R. Soc. Edinburgh , vol.25 , pp. 151-203
    • Crum Brown, A.1    Fraser, T.2
  • 2
    • 34547656228 scopus 로고    scopus 로고
    • The Application of Discovery Toxicology and Pathology Towards the Design of Safer Pharmaceutical Lead Candidates
    • Kramer, J. A.; Sagartz, J. E.; Morris, D. L. The Application of Discovery Toxicology and Pathology Towards the Design of Safer Pharmaceutical Lead Candidates. Nat. Rev. Drug Discovery 2007, 6, 636-649.
    • (2007) Nat. Rev. Drug Discovery , vol.6 , pp. 636-649
    • Kramer, J.A.1    Sagartz, J.E.2    Morris, D.L.3
  • 3
    • 33845379303 scopus 로고
    • Atom Pairs as Molecular Features in Structure-Activity Studies: Definition and Applications
    • Carhart, R. E.; Smith, D. H.; Venkataraghavan, R. Atom Pairs as Molecular Features in Structure-Activity Studies: Definition and Applications. J. Chem. Inf. Comput. Sci. 1985, 25, 64-73.
    • (1985) J. Chem. Inf. Comput. Sci , vol.25 , pp. 64-73
    • Carhart, R.E.1    Smith, D.H.2    Venkataraghavan, R.3
  • 4
    • 54249109274 scopus 로고    scopus 로고
    • Friedman, J. H.; Popescu, B. E. Predictive Learning via Rule Ensembles; Technical Report; Department of Statistics, Stanford University: 2005.
    • Friedman, J. H.; Popescu, B. E. Predictive Learning via Rule Ensembles; Technical Report; Department of Statistics, Stanford University: 2005.
  • 5
    • 34249753618 scopus 로고
    • Support-Vector Networks
    • Cortes, C.; Vapnik, V. Support-Vector Networks. Machine Learning 1995, 20, 273-297.
    • (1995) Machine Learning , vol.20 , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 7
    • 54249143435 scopus 로고    scopus 로고
    • Open Babel Package, version 2.1.1; 2007
    • Open Babel Package, version 2.1.1; 2007.
  • 8
    • 1842686775 scopus 로고    scopus 로고
    • A Model for Identifying HERG K+ channel Blockers
    • Aronov, A. M.; Goldman, B. B. A Model for Identifying HERG K+ channel Blockers. Bioorg. Med. Chem. 2004, 12, 2307-2315.
    • (2004) Bioorg. Med. Chem , vol.12 , pp. 2307-2315
    • Aronov, A.M.1    Goldman, B.B.2
  • 11
    • 54249091044 scopus 로고    scopus 로고
    • Friedman, J. H.; Popescu, B. E. Gradient Directed Regularization for Linear Regression and Classification; Technical Report; Department of Statistics, Stanford University: 2004.
    • Friedman, J. H.; Popescu, B. E. Gradient Directed Regularization for Linear Regression and Classification; Technical Report; Department of Statistics, Stanford University: 2004.
  • 12
    • 54249098988 scopus 로고    scopus 로고
    • R Development Core Team. R: A Language and Environment for Statistical Computing version 2.5.1; R Foundation for Statistical Computing: Vienna, Austria, 2007
    • R Development Core Team. R: A Language and Environment for Statistical Computing version 2.5.1; R Foundation for Statistical Computing: Vienna, Austria, 2007.
  • 13
    • 54249143434 scopus 로고    scopus 로고
    • Höcker, A.; Speckmayer, P.; Stelzer, J.; Tegenfeldt, F.; Voss H.; Voss, K. TMVA Toolkit for Multivariate Data Analysis with ROOT; 2007, http://tmva.sourceforge.net/.
    • Höcker, A.; Speckmayer, P.; Stelzer, J.; Tegenfeldt, F.; Voss H.; Voss, K. TMVA Toolkit for Multivariate Data Analysis with ROOT; 2007, http://tmva.sourceforge.net/.
  • 14
    • 54249144305 scopus 로고    scopus 로고
    • Chang, C.-C, Lin, C.-J. UBSVM: A Library for Support Vector Machines version 2.85; 2007
    • Chang, C.-C.; Lin, C.-J. UBSVM: A Library for Support Vector Machines version 2.85; 2007, http://www.csie.nm.edu.tw/~cjlin/libsvm.
  • 16
    • 85142186571 scopus 로고    scopus 로고
    • Sing, T.; Sander, O.; Beerenwinkel, N.; Lengauer, T. ROCR: Visualizing Classifier Performance in R. Bioinformatics 2005, 21, 3940-3941.
    • Sing, T.; Sander, O.; Beerenwinkel, N.; Lengauer, T. ROCR: Visualizing Classifier Performance in R. Bioinformatics 2005, 21, 3940-3941.
  • 17
    • 33746256602 scopus 로고    scopus 로고
    • Lazy Structure-Activity Relationships (Lazar) for the Prediction of Rodent Carcinogenicity and Salmonella Mutagenicity
    • Helma, C. Lazy Structure-Activity Relationships (Lazar) for the Prediction of Rodent Carcinogenicity and Salmonella Mutagenicity. Mol. Diversity 2006, 10, 147-158.
    • (2006) Mol. Diversity , vol.10 , pp. 147-158
    • Helma, C.1
  • 18
    • 12144257810 scopus 로고    scopus 로고
    • Derivation and Validation of Toxicophores for Mutagenicity Prediction
    • Kazius, J.; McGuire, R.; Bursi, R. Derivation and Validation of Toxicophores for Mutagenicity Prediction. J. Med. Chem. 2005, 48, 312-320.
    • (2005) J. Med. Chem , vol.48 , pp. 312-320
    • Kazius, J.1    McGuire, R.2    Bursi, R.3
  • 19
    • 0026342471 scopus 로고
    • The Carcinogenic Potency Database: Analyses of 4000 Chronic Animal Cancer Experiments Published in the General Literature and by the U.S. National Cancer Institute/National Toxicology Program
    • Gold, L. S.; Stone, T. H.; Manley, N. B.; Garfinkel, G. B.; Hudes, E S.; Rohrbach, L.; Ames, B. N. The Carcinogenic Potency Database: Analyses of 4000 Chronic Animal Cancer Experiments Published in the General Literature and by the U.S. National Cancer Institute/National Toxicology Program. Environ. Health Perspect. 1991, 96, 11-15.
    • (1991) Environ. Health Perspect , vol.96 , pp. 11-15
    • Gold, L.S.1    Stone, T.H.2    Manley, N.B.3    Garfinkel, G.B.4    Hudes, E.S.5    Rohrbach, L.6    Ames, B.N.7
  • 20
    • 0037192325 scopus 로고    scopus 로고
    • Distributed Structure-Searchable Toxicity (DSSTox) Public Database Network: A Proposal
    • Richard, A. M.; Williams, C. R. Distributed Structure-Searchable Toxicity (DSSTox) Public Database Network: A Proposal. Mutat. Res. 2002, 499, 27-52.
    • (2002) Mutat. Res , vol.499 , pp. 27-52
    • Richard, A.M.1    Williams, C.R.2
  • 21
    • 33646824183 scopus 로고    scopus 로고
    • Chemical Structure Indexing of Toxicity Data on the Internet: Moving Toward a Flat World
    • Richard, A. M.; Gold, L. S.; Nicklaus, M. C. Chemical Structure Indexing of Toxicity Data on the Internet: Moving Toward a Flat World. Curr. Opin. Drug Discovery Devel. 2006, 9, 314-325.
    • (2006) Curr. Opin. Drug Discovery Devel , vol.9 , pp. 314-325
    • Richard, A.M.1    Gold, L.S.2    Nicklaus, M.C.3
  • 23
    • 33646730764 scopus 로고    scopus 로고
    • Robust Ligand-Based Modeling of the Biological Targets of Known Drugs
    • Cleves, A. E.; Jain, A. N. Robust Ligand-Based Modeling of the Biological Targets of Known Drugs. J. Med. Chem. 2006, 49, 2921-2938.
    • (2006) J. Med. Chem , vol.49 , pp. 2921-2938
    • Cleves, A.E.1    Jain, A.N.2
  • 24
    • 13844312649 scopus 로고    scopus 로고
    • Irwin, J. J.; Shoichet, B. K. ZINC-A Free Database of Commercially Available Compounds for Virtual Screening. J. Chem. Inf. Model 2005, 45177-182 (accessed Feb 19, 2008).
    • Irwin, J. J.; Shoichet, B. K. ZINC-A Free Database of Commercially Available Compounds for Virtual Screening. J. Chem. Inf. Model 2005, 45177-182 (accessed Feb 19, 2008).
  • 25
    • 17144385534 scopus 로고    scopus 로고
    • Virtual Screening Workflow Development Guided by the "Receiver Operating Characteristic" Curve Approach. Application to High-Throughput docking on Metabotropic Glutamate Receptor Subtype 4
    • Triballeau, N.; Acher, F.; Brabet, I.; Pin, J.-P.; Bertrand, H.-O. Virtual Screening Workflow Development Guided by the "Receiver Operating Characteristic" Curve Approach. Application to High-Throughput docking on Metabotropic Glutamate Receptor Subtype 4. J. Med. Chem. 2005, 48, 2534-2547.
    • (2005) J. Med. Chem , vol.48 , pp. 2534-2547
    • Triballeau, N.1    Acher, F.2    Brabet, I.3    Pin, J.-P.4    Bertrand, H.-O.5
  • 26
    • 54249125945 scopus 로고    scopus 로고
    • Fawcett, T. ROC Graphs: Notes and Practical Considerations for Data Mining Researchers; Technical Report; Hewlett-Packard Company: 2003.
    • Fawcett, T. ROC Graphs: Notes and Practical Considerations for Data Mining Researchers; Technical Report; Hewlett-Packard Company: 2003.
  • 27
    • 33644876210 scopus 로고    scopus 로고
    • Wishart, D. S.; Knox, C.; Guo, A. C.; Shrivastava, S.; Hassanali, M.; Stothard, P.; Chang, Z.; Woolsey, J. DrugBank: A Comprehensive Resource for in Silico Drug Discovery and Exploration. Nucleic Acids Res. 2006, 34, D668-D672.
    • Wishart, D. S.; Knox, C.; Guo, A. C.; Shrivastava, S.; Hassanali, M.; Stothard, P.; Chang, Z.; Woolsey, J. DrugBank: A Comprehensive Resource for in Silico Drug Discovery and Exploration. Nucleic Acids Res. 2006, 34, D668-D672.
  • 28
    • 38549151817 scopus 로고    scopus 로고
    • Wishart, D. S.; Knox, C.; Guo, A. C.; Cheng, D.; Shrivastava, S.; Tzur, D.; Gautam, B.; Hassanali, M. DrugBank: A Knowledgebase for Drugs, Drug Actions and Drug Targets. Nucleic Acids Res. 2008, 36, D901-D906.
    • Wishart, D. S.; Knox, C.; Guo, A. C.; Cheng, D.; Shrivastava, S.; Tzur, D.; Gautam, B.; Hassanali, M. DrugBank: A Knowledgebase for Drugs, Drug Actions and Drug Targets. Nucleic Acids Res. 2008, 36, D901-D906.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.