-
1
-
-
0028220048
-
Synonymous codon usage in Drosophila melanogaster. Natural selection and translational accuracy
-
Akashi H. 1994. Synonymous codon usage in Drosophila melanogaster. Natural selection and translational accuracy. Genetics. 136:927-935.
-
(1994)
Genetics
, vol.136
, pp. 927-935
-
-
Akashi, H.1
-
2
-
-
0029985179
-
Molecular evolution between Drosophila melanogaster and D. simulans: Reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster
-
Akashi H. 1996. Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster. Genetics. 144:1297-1307.
-
(1996)
Genetics
, vol.144
, pp. 1297-1307
-
-
Akashi, H.1
-
3
-
-
0035546157
-
Gene expression and molecular evolution
-
Akashi H. 2001. Gene expression and molecular evolution. Curr Opin Genet Dev. 11:660-666.
-
(2001)
Curr Opin Genet Dev
, vol.11
, pp. 660-666
-
-
Akashi, H.1
-
4
-
-
0030903283
-
Natural selection and the frequency distributions of "silent" DNA polymorphisms in Drosophila
-
Akashi H, Schaeffer SW. 1997. Natural selection and the frequency distributions of "silent" DNA polymorphisms in Drosophila. Genetics. 146:295-307.
-
(1997)
Genetics
, vol.146
, pp. 295-307
-
-
Akashi, H.1
Schaeffer, S.W.2
-
5
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
Bulmer M. 1991. The selection-mutation-drift theory of synonymous codon usage. Genetics. 129:897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
6
-
-
0037274714
-
In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein
-
Carlini DB, Stephan W. 2003. In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein. Genetics. 163:239-243.
-
(2003)
Genetics
, vol.163
, pp. 239-243
-
-
Carlini, D.B.1
Stephan, W.2
-
7
-
-
84984088333
-
A biochemical study of the growth of Drosophila melanogaster
-
Church RB, Robertson FW. 1966. A biochemical study of the growth of Drosophila melanogaster. J Exp Zool. 162:337-351.
-
(1966)
J Exp Zool
, vol.162
, pp. 337-351
-
-
Church, R.B.1
Robertson, F.W.2
-
8
-
-
0036263105
-
Population, evolutionary and genomic consequences of interference selection
-
Comeron JM, Kreitman M. 2002. Population, evolutionary and genomic consequences of interference selection. Genetics. 161:389-410.
-
(2002)
Genetics
, vol.161
, pp. 389-410
-
-
Comeron, J.M.1
Kreitman, M.2
-
9
-
-
0032894285
-
Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila
-
Comeron JM, Kreitman M, Aguadé M. 1999. Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila. Genetics. 151:239-249.
-
(1999)
Genetics
, vol.151
, pp. 239-249
-
-
Comeron, J.M.1
Kreitman, M.2
Aguadé, M.3
-
10
-
-
0024416614
-
Codon choice and gene expression: Synonymous codons differ in translational accuracy
-
Dix DB, Thompson RC. 1989. Codon choice and gene expression: synonymous codons differ in translational accuracy. Proc Natl Acad Sci USA. 86:6888-6892.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 6888-6892
-
-
Dix, D.B.1
Thompson, R.C.2
-
11
-
-
0015947382
-
Functional adaptation of tRNA population
-
Garel J-P. 1974. Functional adaptation of tRNA population. J Theor Biol. 43:211-225.
-
(1974)
J Theor Biol
, vol.43
, pp. 211-225
-
-
Garel, J.-P.1
-
12
-
-
0030833845
-
Interspecific and intraspecific comparisons of the period locus in the Drosophila willistoni sibling species
-
Gleason JM, Powell JR. 1997. Interspecific and intraspecific comparisons of the period locus in the Drosophila willistoni sibling species. Mol Biol Evol. 14:741-753.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 741-753
-
-
Gleason, J.M.1
Powell, J.R.2
-
13
-
-
0020491327
-
Codon usage in bacteria: Correlation with gene expressivity
-
Gouy M, Gautier C. 1982. Codon usage in bacteria: correlation with gene expressivity. Nucleic Acids Res. 10:7055-7074.
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 7055-7074
-
-
Gouy, M.1
Gautier, C.2
-
14
-
-
0020363515
-
Preferential codon usage in prokaryotic genes: The optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes
-
Grosjean H, Fiers W. 1982. Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes. Gene. 18:199-209.
-
(1982)
Gene
, vol.18
, pp. 199-209
-
-
Grosjean, H.1
Fiers, W.2
-
15
-
-
0037388263
-
Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays
-
Hekstra D, Taussig AR, Magnasco M, Naef F. 2003. Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays. Nucleic Acids Res. 31:1962-1968.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1962-1968
-
-
Hekstra, D.1
Taussig, A.R.2
Magnasco, M.3
Naef, F.4
-
16
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
Kerr MK, Martin M, Churchill GA. 2000. Analysis of variance for gene expression microarray data. J Comput Biol. 7:819-837.
-
(2000)
J Comput Biol
, vol.7
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
-
18
-
-
0032829163
-
Recent selection on synonymous codon usage in Drosophila
-
Kliman RM. 1999. Recent selection on synonymous codon usage in Drosophila. J Mol Evol. 49:343-351.
-
(1999)
J Mol Evol
, vol.49
, pp. 343-351
-
-
Kliman, R.M.1
-
19
-
-
0028040734
-
The effects of mutation and natural selection on codon bias in genes of Drosophila
-
Kliman RM, Hey J. 1994. The effects of mutation and natural selection on codon bias in genes of Drosophila. Genetics. 137:1049-1056.
-
(1994)
Genetics
, vol.137
, pp. 1049-1056
-
-
Kliman, R.M.1
Hey, J.2
-
20
-
-
0037986699
-
Hill-Robertson interference in Drosophila melanogaster: Reply to Marais, Mouchiroud, and Duret
-
Kliman RM, Hey J. 2003. Hill-Robertson interference in Drosophila melanogaster: reply to Marais, Mouchiroud, and Duret. Genet Res. 81:89-90.
-
(2003)
Genet Res
, vol.81
, pp. 89-90
-
-
Kliman, R.M.1
Hey, J.2
-
21
-
-
0025763551
-
Codon bias and gene expression
-
Kurland CG. 1991. Codon bias and gene expression. FEBS Lett. 285:165-169.
-
(1991)
FEBS Lett
, vol.285
, pp. 165-169
-
-
Kurland, C.G.1
-
22
-
-
0035826858
-
Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes
-
Marais G, Mouchiroud D, Duret L. 2001. Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes. Proc Nat Acad Sci USA. 98:5688-5692.
-
(2001)
Proc Nat Acad Sci USA
, vol.98
, pp. 5688-5692
-
-
Marais, G.1
Mouchiroud, D.2
Duret, L.3
-
23
-
-
1142302213
-
Selection on codon usage in Drosophila americana
-
Maside X, Lee AW, Charlesworth B. 2004. Selection on codon usage in Drosophila americana. Curr Biol. 14:150-154.
-
(2004)
Curr Biol
, vol.14
, pp. 150-154
-
-
Maside, X.1
Lee, A.W.2
Charlesworth, B.3
-
25
-
-
0026725308
-
Rates of synonymous substitution and base composition of nuclear genes in Drosophila
-
Moriyama EN, Gojobori T. 1992. Rates of synonymous substitution and base composition of nuclear genes in Drosophila. Genetics. 130:855-864.
-
(1992)
Genetics
, vol.130
, pp. 855-864
-
-
Moriyama, E.N.1
Gojobori, T.2
-
26
-
-
0030731696
-
Codon usage bias and tRNA abundance in Drosophila
-
Moriyama EN, Powell JR. 1997. Codon usage bias and tRNA abundance in Drosophila. J Mol Evol. 45:514-523.
-
(1997)
J Mol Evol
, vol.45
, pp. 514-523
-
-
Moriyama, E.N.1
Powell, J.R.2
-
27
-
-
0032126484
-
Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli
-
Moriyama EN, Powell JR. 1998. Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli. Nucleic Acids Res. 26:3188-3193.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 3188-3193
-
-
Moriyama, E.N.1
Powell, J.R.2
-
28
-
-
0030861159
-
Evolution of codon usage bias in Drosophila
-
Powell JR, Moriyama EN. 1997. Evolution of codon usage bias in Drosophila. Proc Natl Acad Sci USA. 94:7784-7790.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 7784-7790
-
-
Powell, J.R.1
Moriyama, E.N.2
-
29
-
-
11244324849
-
Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes
-
Qin H, Wu WB, Comeron JM, Kreitman M, Li W-H. 2004. Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes. Genetics. 168:2245-2260.
-
(2004)
Genetics
, vol.168
, pp. 2245-2260
-
-
Qin, H.1
Wu, W.B.2
Comeron, J.M.3
Kreitman, M.4
Li, W.-H.5
-
30
-
-
0011435743
-
Abrupt decline in the rate of accumulation of total protein and yolk in postvitellogenic egg chambers of Drosophila
-
Ruddell A, Jacobs-Lorena M. 1983. Abrupt decline in the rate of accumulation of total protein and yolk in postvitellogenic egg chambers of Drosophila. Rouxs Arch Dev Biol. 192:189-195.
-
(1983)
Rouxs Arch Dev Biol
, vol.192
, pp. 189-195
-
-
Ruddell, A.1
Jacobs-Lorena, M.2
-
31
-
-
0030617966
-
Density-dependent selection in Drosophila: Evolution of growth rate and body size
-
Santos M, Borash DJ, Amitabh J, Bounlutay N, Mueller LD. 1997. Density-dependent selection in Drosophila: evolution of growth rate and body size. Evolution. 5:420-432.
-
(1997)
Evolution
, vol.5
, pp. 420-432
-
-
Santos, M.1
Borash, D.J.2
Amitabh, J.3
Bounlutay, N.4
Mueller, L.D.5
-
32
-
-
0038675397
-
The kinetics of embryo drying in Drosophila melanogaster as a function of the steps in permeabilization: Experimental
-
Schreuders PD, Kassis JN, Cole KW, Schneider U, Mahowald AP, Mazur P. 1996. The kinetics of embryo drying in Drosophila melanogaster as a function of the steps in permeabilization: experimental. J Insect Physiol. 42:501-516.
-
(1996)
J Insect Physiol
, vol.42
, pp. 501-516
-
-
Schreuders, P.D.1
Kassis, J.N.2
Cole, K.W.3
Schneider, U.4
Mahowald, A.P.5
Mazur, P.6
-
33
-
-
0029654101
-
DNA-sequence evolution - the sounds of silence
-
Sharp PM, Averof M, Lloyd AT, Matassi G, Peden JF. 1995. DNA-sequence evolution - the sounds of silence. Phil Trans R Soc Lond B Biol Sci. 349:241-247.
-
(1995)
Phil Trans R Soc Lond B Biol Sci
, vol.349
, pp. 241-247
-
-
Sharp, P.M.1
Averof, M.2
Lloyd, A.T.3
Matassi, G.4
Peden, J.F.5
-
34
-
-
14544277543
-
Variation in the strength of selected codon usage bias among bacteria
-
Sharp PM, Bailes E, Grocock RJ, Peden JF, Sockett RE. 2005. Variation in the strength of selected codon usage bias among bacteria. Nucleic Acids Res. 33:1141-1153.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1141-1153
-
-
Sharp, P.M.1
Bailes, E.2
Grocock, R.J.3
Peden, J.F.4
Sockett, R.E.5
-
35
-
-
0024591558
-
On the rate of DNA sequence evolution in Drosophila
-
Sharp PM, Li W-H. 1989. On the rate of DNA sequence evolution in Drosophila. J Mol Evol. 29:398-402.
-
(1989)
J Mol Evol
, vol.29
, pp. 398-402
-
-
Sharp, P.M.1
Li, W.-H.2
-
36
-
-
0001906841
-
Codon usage
-
Maronni G, editor, New York: Oxford University Press. p
-
Sharp PM, Lloyd AT. 1993. Codon usage. In: Maronni G, editor. An atlas of Drosophila genes. New York: Oxford University Press. p. 378-397.
-
(1993)
An atlas of Drosophila genes
, pp. 378-397
-
-
Sharp, P.M.1
Lloyd, A.T.2
-
37
-
-
0024116811
-
Silent sites in Drosophila are not neutral: Evidence of selection among synonymous codons
-
Shields DC, Sharp PM, Higgins DG, Wright F. 1988. "Silent" sites in Drosophila are not neutral: evidence of selection among synonymous codons. Mol Biol Evol. 5:704-716.
-
(1988)
Mol Biol Evol
, vol.5
, pp. 704-716
-
-
Shields, D.C.1
Sharp, P.M.2
Higgins, D.G.3
Wright, F.4
-
38
-
-
0025978946
-
Queuine metabolism and cadmium toxicity in Drosophila melanogaster
-
Siard T, Jacobson KB, Farkas WR. 1991. Queuine metabolism and cadmium toxicity in Drosophila melanogaster. Biofactor. 3:41-47.
-
(1991)
Biofactor
, vol.3
, pp. 41-47
-
-
Siard, T.1
Jacobson, K.B.2
Farkas, W.R.3
-
39
-
-
0001875439
-
Transcription of eukaryotic tRNA genes
-
Söll D, RajBhandary UL, editors, Washington DC, ASM Press. p
-
Sprague KU. 1995. Transcription of eukaryotic tRNA genes. In: Söll D, RajBhandary UL, editors. tRNA structure, biosynthesis, and function. Washington (DC): ASM Press. p. 31-50.
-
(1995)
tRNA structure, biosynthesis, and function
, pp. 31-50
-
-
Sprague, K.U.1
-
40
-
-
0027137721
-
Effect on fitness components of enhanced expression of elongation factor EF-1a. I. The contrasting approaches of molecular and population biologists
-
Stearns SC, Kaiser M, Hillesheim E. 1993. Effect on fitness components of enhanced expression of elongation factor EF-1a. I. The contrasting approaches of molecular and population biologists. Am Nat. 142:961-993.
-
(1993)
Am Nat
, vol.142
, pp. 961-993
-
-
Stearns, S.C.1
Kaiser, M.2
Hillesheim, E.3
-
41
-
-
7444233156
-
A gene expression map for the euchromatic genome of Drosophila melanogaster
-
Stolc V, Gauhar Z, Mason CE, Halsz G, Van Batenburg MF, Rifkin SA, Barbano PE, Bussemaker HJ, White KP. 2004. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science. 306:655-660.
-
(2004)
Science
, vol.306
, pp. 655-660
-
-
Stolc, V.1
Gauhar, Z.2
Mason, C.E.3
Halsz, G.4
Van Batenburg, M.F.5
Rifkin, S.A.6
Barbano, P.E.7
Bussemaker, H.J.8
White, K.P.9
-
42
-
-
0037975700
-
Bayesian analysis of gene expression levels: Statistical quantification of relative mRNA level across multiple strains or treatments
-
Townsend JP, Hartl DL. 2002. Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments. Genome Biol. 3:2-16.
-
(2002)
Genome Biol
, vol.3
, pp. 2-16
-
-
Townsend, J.P.1
Hartl, D.L.2
-
45
-
-
0015787150
-
Analysis of tRNAs during the development of Drosophila
-
White B, Tener G, Holden J, Suzuki D. 1973. Analysis of tRNAs during the development of Drosophila. Dev Biol. 33:185-195.
-
(1973)
Dev Biol
, vol.33
, pp. 185-195
-
-
White, B.1
Tener, G.2
Holden, J.3
Suzuki, D.4
-
46
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, Hamadeh H, Busherl P, Afshari C, Paules RS. 2001. Assessing gene significance from cDNA microarray expression data via mixed models. J Comput Biol. 8:625-637.
-
(2001)
J Comput Biol
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Busherl, P.6
Afshari, C.7
Paules, R.S.8
-
47
-
-
0025318864
-
The effective number of codons used in a gene
-
Wright F. 1990. The effective number of codons used in a gene. Gene. 87:23-29.
-
(1990)
Gene
, vol.87
, pp. 23-29
-
-
Wright, F.1
|