A cell pattern generation model based on an extended artificial regulatory network

BioSystems

Volumn 94, Issue 1-2, 2008, Pages 95-101

  Chavoya, Arturo ^a,c   Duthen, Yves ^b,c  

^a UNIVERSITY OF GUADALAJARA   (Mexico)

^b UNIVERSITY OF TOULOUSE CAPITOLE   (France)

^c IRIT   (France)

Author keywords

Artificial regulatory network; Cell pattern; Cellular automata; French flag problem; Genetic algorithms

Indexed keywords

CELLULAR AUTOMATON; CHROMOSOME; CYTOLOGY; GENETIC ALGORITHM; REPRODUCTION;

ARTICLE; ARTIFICIAL NEURAL NETWORK; CHROMOSOME; GENE CONTROL; GENETIC ALGORITHM; GEOMETRY;

EID: 53949115065     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biosystems.2008.05.015     Document Type: Article

References (29)

1. Baker R.W., and Herman G.T. Celia-a cellular linear iterative array simulator. Proceedings of the Fourth Annual Conference on Applications of Simulation. Winter Simulation Conference (1970) 64-73
2. Banzhaf W. Artificial regulatory networks and genetic programming. In: Riolo R.L., and Worzel B. (Eds). Genetic Programming Theory and Practice Ch. 4 (2003), Kluwer 43-62
3. Beurier G., Michel F., and Ferber J. A morphogenesis model for multiagent embryogeny. In: Rocha L.M., Yaeger L.S., Bedau M.A., Floreano D., Goldstone R.L., and Vespignani A. (Eds). Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (ALife X) (2006) 84-90
4. Bongard J. Evolving modular genetic regulatory networks. Proceedings of the 2002 Congress on Evolutionary Computation (CEC2002) (2002), IEEE Press, Piscataway, NJ 1872-1877
5. Bowers C. Simulating evolution with a computational model of embryogeny: obtaining robustness from evolved individuals. In: Capcarrere M.S., Freitas A.A., Bentley P.J., Johnson C.G., and Timmons J. (Eds). Advances in Artificial Life, Proceeding of the 8th European Conference on Artificial Life: ECAL 2005. Springer (2005) 149-158
6. Chavoya A., and Duthen Y. Evolving cellular automata for 2D form generation. Proceedings of the Ninth International Conference on Computer Graphics and Artificial Intelligence 3IA'2006 (2006) 129-137
7. Chavoya A., and Duthen Y. Using a genetic algorithm to evolve cellular automata for 2D/3D computational development. GECCO'06: Proceedings of the Eighth Annual Conference on Genetic and Evolutionary Computation (2006), ACM Press, New York, NY, USA 231-232
8. Chavoya A., and Duthen Y. Evolving an artificial regulatory network for 2D cell patterning. Proceedings of the 2007 IEEE Symposium on Artificial Life (CI-ALife'07). IEEE Computational Intelligence Society (2007) 47-53
9. Davidson E.H. The Regulatory Genome: Gene Regulatory Networks in Development And Evolution. 1st edn. (2006), Academic Press
10. de Garis H. Artificial embryology and cellular differentiation. In: Bentley P.J. (Ed). Evolutionary Design by Computers (1999), Morgan Kaufmann Publishers, Inc., San Francisco, USA 281-295
11. Devert A., Bredeche N., and Schoenauer M. Robust multi-cellular developmental design. GECCO'07: Proceedings of the 9th Annual Conference on Genetic and Evolutionary Computation. ACM, New York, NY, USA (2007) 982-989
12. Eggenberger P. Evolving morphologies of simulated 3D organisms based on differential gene expression. In: Harvey I., and Husbands P. (Eds). Proceedings of the 4th European Conference on Artificial Life. Springer (1997) 205-213
13. Flann N., Hu J., Bansal M., Patel V., and Podgorski G. Biological development of cell patterns: characterizing the space of cell chemistry genetic regulatory networks. ECAL. (2005) 57-66
14. Gordon T.G.W., and Bentley P.J. Bias and scalability in evolutionary development. GECCO'05: Proceedings of the 2005 Conference on Genetic and Evolutionary Computation. ACM, New York, NY, USA (2005) 83-90
15. Harding S.L., Miller J.F., and Banzhaf W. Self-modifying Cartesian genetic programming. GECCO'07: Proceedings of the 9th Annual Conference on Genetic and Evolutionary Computation. ACM, New York, NY, USA (2007) 1021-1028
16. Herman G.T., and Liu W.H. The daughter of celia, the French flag and the firing squad. WSC'73: Proceedings of the 6th conference on Winter simulation. ACM, New York, NY, USA (1973) 870
17. Holland J.H. Adaptation in Natural and Artificial Systems: An Introductory Analysis with Applications to Biology Control and Artificial Intelligence (1992), MIT Press, Cambridge, MA, USA
18. Kumar S., and Bentley P.J. An introduction to computational development. In: Kumar S., and Bentley P.J. (Eds). On Growth, Form and Computers, vol. 1 (2003), Academic Press, New York, NY, USA 1-44
19. Kuo P.D., and Banzhaf W. Small world and scale-free network topologies in an artificial regulatory network model. In: Pollack J., Bedau M., Husbands P., Ikegami T., and Watson R. (Eds). Proceedings of Artificial Life IX, (ALIFE-9), Boston, USA (2004), MIT Press, Cambridge 404-409
20. Kuo P.D., Leier A., and Banzhaf W. September Evolving dynamics in an artificial regulatory network model. In: Yao X., Burke E., Lozano J., Smith J., Merelo-Guervós J., Bullinaria J., Rowe J., Tino P., Kabán A., and Schwefel H.-P. (Eds). Proceedings of the Parallel Problem Solving from Nature Conference (PPSN-04). LNCS 3242 (2004), Springer, Berlin, Birmingham, UK 571-580
21. Lindenmayer A., and Rozenberg G. Developmental systems and languages. STOC'72: Proceedings of the Fourth Annual ACM Symposium on Theory of Computing. ACM, New York, NY, USA (1972) 214-221
22. Miller J.F., and Banzhaf W. Evolving the program for a cell: from French flags to Boolean circuits. In: Kumar S., and Bentley P.J. (Eds). On Growth, Form and Computers (2003), Academic Press 278-301
23. Mitchell M. An Introduction to Genetic Algorithms (1996), MIT Press, Cambridge, MA, USA
24. Reil T. Dynamics of gene expression in an artificial genome-implications for biological and artificial ontogeny. Proceedings of the 5th European Conference on Artificial Life (ECAL). Springer Verlag, New York, NY (1999) 457-466
25. Stewart F., Taylor T., and Konidaris G. Metamorph: experimenting with genetic regulatory networks for artificial development. ECAL (2005) 108-117
26. Tyrrell A.M., and Greensted A.J. Evolving dependability. J. Emerg. Technol. Comput. Syst. 3 2 (2007) 7
27. Wilensky, U., 1999. NetLogo. http://ccl.northwestern.edu/netlogo/, center for Connected Learning and Computer-Based Modeling, Northwestern University. Evanston, IL.
28. Wolfram S. Statistical mechanics of cellular automata. Rev. Modern Phys. 55 (1983) 601-644
29. Wolpert L. The French flag problem: a contribution to the discussion on pattern development and regulation. In: Waddington C. (Ed). Towards a Theoretical Biology (1968), Edinburgh University Press, New York, NY, USA 125-133