RuBisCO cistron sequence variation and phylogeography of Ceramium kondoi (Ceramiaceae, Rhodophyta)

Botanica Marina

Volumn 51, Issue 5, 2008, Pages 370-377

  Yang, Eun Chan ^a   Cho, Ga Youn ^a   Kogame, Kazuhiro ^b   Carlile, Amy Lynn ^c   Min Boo, Sung ^a  

^a Chungnam National University   (South Korea)

^b HOKKAIDO UNIVERSITY   (Japan)

^c UNIVERSITY OF WASHINGTON   (United States)

Author keywords

Ceramiaceae; Ceramium kondoi; Phylogeography; RuBisCO cistron

Indexed keywords

DNA; GENETIC VARIATION; INTRODUCED SPECIES; MORPHOLOGY; PHYLOGENETICS; PHYLOGEOGRAPHY; PLASTID; RECONSTRUCTION; RED ALGA; TYPE SPECIMEN;

ASIA; EURASIA; FAR EAST; JAPAN; KOREA; NORTH AMERICA; RUSSIAN FEDERATION; UNITED STATES;

CERAMIACEAE; CERAMIUM KONDOI; RHODOPHYTA;

EID: 53649101784     PISSN: 00068055     EISSN: 14374323     Source Type: Journal    
DOI: 10.1515/BOT.2008.051     Document Type: Article

References (35)

1. Adrianov, A.V. and O.G. Kussakin. 1998. A check-list of biota of the Peter the Great Bay, the Sea of Japan. Institute of Marine Biology, Far East Branch, Russian Academy of Science, Vladivostok. 349 pp.
2. Bickford, D., D.J. Lohman, N.S. Sodhi, P.K.L. Ng, R. Meier, K. Winker, K.K. Ingram and I. Das. 2006. Cryptic species as a window on diversity and conservation. Trends Ecol. Evol. 22: 148-155.
3. Boo, S.M. and I.K. Lee. 1994. Ceramium and Campylaephora (Ceramiaceae, Rhodophyta). In: (I. Akatsuka, I. ed.) Biology of economic algae. SPB Academic Publishers, The Hague. pp. 1-33.
4. Boo, S.M. and H.S. Yoon. 1993. Systematic studies of Ceramium kondoi (Ceramiaceae, Rhodophyta) in the field and in culture. Korean J. Phycol. 8: 179-189.
5. Cho, T.O., S.M. Boo and G.I. Hansen. 2001. Structure and reproduction of the genus Ceramium (Ceramiales, Rhodophyta) from Oregon, USA. Phycologia 40: 547-571.
6. Clement, M., D. Posada and K.A. Crandall. 2000. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9: 1657-1669.
7. Collins, F.S., I. Holden and W.A. Setchell. 1895-1919. Phycotheca boreali-americana. A collection of dried specimens of the algae of North America. Malden, MA. Fascs. 1-46, nos. 1-2300; fascs. A-E, nos 1-125 (Exsiccatae with printed labels).
8. De Clerck, O., B. Gavio, S. Fredericq, I. Barbara and E. Coppejans. 2005. Systematics of Grateloupia filicina (Halymeniaceae, Rhodophyta), based on rbcL sequence analyses and morphological evidence, including the reinstatement of G. minima and the description of G. capensis sp. nov. J. Phycol. 41: 391-410.
9. Dixon, P.S. 1960. Studies on marine algae of the British Isles: The genus Ceramium. J. Mar. Biol. Ass. UK. 39: 221-374.
10. Felsenstein, J. 1985. Confidence intervals on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
11. Freshwater, D.W. and J. Rueness. 1994. Phylogenetic relationships of some European Gelidium (Gelidiales, Rhodophyta) species based on rbcL nucleotide sequence analysis. Phycologia 33: 187-194.
12. Hommersand, M.H. 1963. The morphology and classification of some Ceramiaceae and Rhodomelaceae. Univ. Calif. Publ. Bot. 35: 165-366.
13. Lee, S.-R., Y. Suh and I.K. Lee. 2001. Phylogenetic utility of rbcS sequences: an example from Antithamnion and related genera (Ceramiaceae, Rhodophyta). J. Phycol. 37: 1083-1090.
14. Lin, S.M., S. Fredericq and M.H. Hommersand. 2001. Systematics of the Delesseriaceae (Ceramiales, Rhodophyta) based on large subunit rDNA and rbcL sequences, including the Phycodryoideae, subfam. nov. J. Phycol. 37: 881-899.
15. Maggs, C.A., B.A. Ward, L.M. McIvor, C.M. Evans, J. Rueness and M.J. Stanhope. 2002. Molecular analyses elucidate the taxonomy of fully corticated, non-spiny species of Ceramium (Ceramiaceae, Rhodophyta) in the British Isles. Phycologia 41: 409-420.
16. Nakamura, Y. 1950. New Ceramium and Campylaephora from Japan. Sci. Pap. Inst. Algol. Res. Fac. Sci. Hokkaido Univ. 3: 155-172.
17. Nakamura, Y. 1954. The structure and reproduction of the genera Ceramium and Campylaephora in Japan with special reference to criteria of classification. Sci. Pap. Inst. Algol. Res. Fac. Sci. Hokkaido Univ. 4: 15-62.
18. Nakamura, Y. 1965. Species of the genera Ceramium and Campylaephora, especially those of northern Japan. Sci. Pap. Inst. Algol. Res. Fac. Sci. Hokkaido Univ. 5: 119-180.
19. Notoya, M. and H. Yabu. 1979. Culture and cytology of Ceramium japonicum Okamura and C. kondoi Yendo (Ceramiales, Rhodophyta). Bull. Fac. Fish. Hokkaido Univ. 30: 129-130.
20. Posada, D. and K.A. Crandall. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14: 817-818.
21. Ronquist, F. and J.P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
22. Ruiz, G.M., J.T. Carlton, E.D. Grosholz and A.H. Hines. 1997. Global invasion of marine and estuarine habitats by nonindigenous species: mechanisms, extent, and consequences. Am. Zool. 37: 621-632.
23. Saunders, G.W. and K.V. Lehmkuhl. 2005. Molecular divergence and morphological diversity among four cryptic species of Plocamium (Plocamiales, Florideophyceae) in northern Europe. Eur. J. Phycol. 40: 293-312.
24. Su, Z.H., O. Tominaga, M. Okamoto and S. Osawa. 1998. Origin and diversification of hindwingless Damaster ground beetles within the Japanese islands as deduced from mitochondrial ND5 gene sequences (Coleoptera, Carabidae). Mol. Biol. Evol. 15: 1026-1039.
25. Su, Z.H., O. Tominaga, S. Saito, C.G. Kim and S. Osawa. 2000. Phylogeny of Tomocarabus opaculus (Coleoptera, Carabidae) as deduced from mitochondrial ND5 gene sequences. Elytra 28: 13-20.
26. Swofford, D.L. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sinauer Associates, Sunderland, MA.
27. Tseng, C.K. 1983. Common seaweeds of China. Science Press, Beijing. 316 pp.
28. Valentin, K. and K. Zetsche. 1989. The genes of both subunits of ribulose-1,5-bisphosphate carboxylase constitute an operon on the plastome of a red alga. Curr. Genet. 16: 203-209.
29. Yamada, I. 1980. Benthic marine algal vegetation along the coasts of Hokkaido, with special reference to the vertical distribution. J. Fac. Sci. Hokkaido Univ. Ser. V. (Botany). 12: 11-98.
30. Yang, E.C. and S.M. Boo. 2004. Evidence for two independent lineages of Griffithsia (Ceramiaceae, Rhodophyta) based on plastid protein-coding psaA, psbA, and rbcL gene sequences. Mol. Phylogen. Evol. 31: 680-688.
31. Yendo, K. 1920. Novae algae Japonicae. Decas I-III. Bot. Mag. Tokyo 34: 1-12.
32. Wynne, M.J. 1990. Records and notes on Alaskan marine algae. III. Contr. Univ. Mich. Herb. 17: 335-343.
33. Zuccarello, G.C. and J.A. West. 2003. Multiple cryptic species: molecular diversity and reproductive isolation in the Bostrychia radicans/B. moritziana complex (Rhodomelaceae, Rhodophyta) with focus on North American isolates. J. Phycol. 39: 948-959.
34. Zuccarello, G.C., J.A. West and R.J. King. 1999. Evolutionary divergence in the Bostrychia moritziana/B. radicans complex (Rhodomelaceae, Rhodophyta): molecular and hybridization data. Phycologia 38: 234-244.
35. Zuccarello, G.C., J. Bartlett and P.H. Yeates. 2000. Differentiation of Caloglossa leprieurii (Rhodophyta) populations in northern and eastern Australia using plastid haplotypes. Eur. J. Phycol. 35: 357-363.