Patterson-guided ab initio analysis of structures with helical symmetry

Acta Crystallographica Section D: Biological Crystallography

Volumn 64, Issue 10, 2008, Pages 1078-1091

  Kondo, Jiro ^a   Urzhumtseva, Ludmila ^a   Urzhumtsev, Alexandre ^b,c  

^a INST DE BIOL MOLEC ET CELLULAIRE   (France)

^b INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

^c UNIVERSITÉ DE LORRAINE   (France)

Author keywords

Helical symmetry; Molecular position; Molecular replacement; Patterson analysis

Indexed keywords

DNA; RNA;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; HUMAN;

DNA; HUMANS; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; RNA;

HOMO SAPIENS;

EID: 53549093564     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S090744490802595X     Document Type: Article

References (24)

1. Afonine, P. V., Grosse-Kunstleve, R. W. & Adams, P. D. (2005). CCP4 Newsl. 42, contribution 8.
2. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
3. DeLano, W. L. (2002). The PyMOL Molecular Graphics System. DeLano Scientific, San Carlos, USA. http://www.pymol.org.
4. Feynman, R. & Leighton, R. (1985). Surely You're Joking, Mr Feynman! New York & London: W. W. Norton.
5. Franklin, R. E. & Gosling, R. G. (1955). Acta Cryst. 8, 151-156.
6. Harker, D. (1936). J. Chem. Phys. 4, 381-390.
7. Kim, S.-H. & Rich, A. (1969). Science, 166, 1621-1624.
8. Kondo, J., Urzhumtsev, A. & Westhof, E. (2006). Nucleic Acids Res. 34, 676-685.
9. Kondo, J. & Westhof, E. (2008). Nucleic Acids Res. 36, 2654-2666.
10. McCoy, A. J., Grosse-Kunstleve, R. W., Storoni, L. C. & Read, R. J. (2005). Acta Cryst. D61, 458-464.
11. Magdoff, B. S., Crick, F. H. C. & Luzzati, V. (1956). Acta Cryst. 9, 156-162.
12. Navaza, J. (1994). Acta Cryst. A50, 157-163.
13. Ogihara, N. L., Weiss, M. S., Degrado, W. F. & Eisenberg, D. (1997). Protein Sci. 6, 80-88.
14. Pan, B., Mitra, S. N. & Sundaralingam, M. (1998). J. Mol. Biol. 283, 977-984.
15. Patterson, A. L. (1934). Phys. Rev. 46, 372-376.
16. Patterson, A. L. (1935). Z. Kristallogr. 90, 517-542.
17. Rossmann, M. G. & Arnold, E. (2001). Editors. International Tables for Crystallography, Vol. F, pp. 263-292. Dordrecht: Kluwer Academic Publishers.
18. Sakurai, T., Rao, S. T., Rubin, J. & Sundaralingam, M. (1971). Science, 172, 1234-1237.
19. Tong, L. & Rossmann, M. G. (1990). Acta Cryst. A46, 783-792.
20. Tong, L. & Rossmann, M. G. (1997). Methods Enzymol. 276, 594-611.
21. Urzhumtsev, A. & Urzhumtseva, L. (2002). J. Appl. Cryst. 35, 750.
22. Urzhumtseva, L. M. & Urzhumtsev, A. G. (1997). J. Appl. Cryst. 30, 402-410.
23. Urzhumtseva, L. M. & Urzhumtsev, A. G. (2008). J. Appl. Cryst. 41, 479-480.
24. Vernoslova, E. A. & Lunin, V. Yu. (1993). J. Appl. Cryst. 26, 291-294.