Isolation of small RNAs using biotinylated PNAs

Journal of Biochemistry

Volumn 144, Issue 4, 2008, Pages 415-418

  Ohtsuki, Takashi ^a   Fujimoto, Takeshi ^a   Kamimukai, Maya ^a   Kumano, Chisato ^a   Kitamatsu, Mizuki ^a   Sisido, Masahiko ^a  

^a OKAYAMA UNIVERSITY   (Japan)

Author keywords

Non coding RNA; Peptide nucleic acid; Ribosomal RNA; RNA isolation; Transfer RNA

Indexed keywords

PEPTIDE NUCLEIC ACID; RNA;

ARTICLE; BIOTINYLATION; ESCHERICHIA COLI; GENE TARGETING; GENETIC COMPLEMENTATION; HIGH TEMPERATURE; NONHUMAN; PROTEIN BINDING; PROTEIN PURIFICATION; REAL TIME POLYMERASE CHAIN REACTION; RNA ISOLATION;

ANIMALS; BASE SEQUENCE; BIOTINYLATION; CATTLE; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; HUMANS; METHODS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PEPTIDE NUCLEIC ACIDS; RNA; RNA, BACTERIAL; RNA, TRANSFER, LEU; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

ESCHERICHIA COLI;

EID: 53549087501     PISSN: 0021924X     EISSN: 17562651     Source Type: Journal    
DOI: 10.1093/jb/mvn107     Document Type: Article

References (18)

1. Costa, F.F. (2007) Non-coding RNAs: lost in translation? Gene 386, 1-10
2. Mattick, J.S. and Makunin, I.V. (2006) Non-coding RNA. Hum. Mol. Genet. 15 (Spec No 1), R17-R29
3. Dunin-Horkawicz, S., Czerwoniec, A., Gajda, M.J., Feder, M., Grosjean, H., and Bujnicki, J.M. (2006) MODOMICS: a database of RNA modification pathways. Nucleic Acids Res. 34, D145-D149
4. Rozenski, J., Crain, P.F., and McCloskey, J.A. (1999) The RNA Modification Database: 1999 update. Nucleic Acids Res. 27, 196-197
5. Tsurui, H., Kumazawa, Y., Sanokawa, R., Watanabe, Y., Kuroda, T., Wada, A., Watanabe, K., and Shirai, T. (1994) Batchwise purification of specific tRNAs by a solid-phase DNA probe. Anal. Biochem. 221, 166-172
6. Miyauchi, K., Ohara, T., and Suzuki, T. (2007) Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method. Nucleic Acids Res. 35, e24
7. Sugimoto, N., Nakano, S., Katoh, M., Matsumura, A., Nakamuta, H., Ohmichi, T., Yoneyama, M., and Sasaki, M. (1995) Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes. Biochemistry 34, 11211-11216
8. Wilson, M.H. and McCloskey, J.A. (1973) Isotopic labeling studies of the base-catalyzed conversion of 1-methyladenosine to N6 -methyladenosine. J. Org. Chem. 38, 2247-2248
9. Uhlmann, E., Will, D.W., Breipohl, G., Langner, D., and Ryte, A. (1996) Synthesis and properties of PNA/DNA chimeras. Angew. Chem. Int. Ed. Engl. 35, 2632-2635
10. Orum, H., Nielsen, P.E., Jorgensen, M., Larsson, C., Stanley, C., and Koch, T. (1995) Sequence-specific purification of nucleic acids by PNA-controlled hybrid selection. Biotechniques 19, 472-480
11. Chandler, D.P. and Jarrell, A.E. (2003) Enhanced nucleic acid capture and flow cytometry detection with peptide nucleic acid probes and tunable-surface microparticles. Anal. Biochem. 312, 182-190
12. Karkare, S. and Bhatnagar, D. (2006) Promising nucleic acid analogs and mimics: characteristic features and applications of PNA, LNA, and morpholino. Appl. Microbiol. Biotechnol. 71, 575-586
13. Arzumanov, A., Walsh, A.P., Rajwanshi, V.K., Kumar, R., Wengel, J., and Gait, M.J. (2001) Inhibition of HIV-1 Tat-dependent trans activation by steric block chimeric 2′-O-methyl/LNA oligoribonucleotides. Biochemistry 40, 14645-14654
14. Christensen, L., Fitzpatrick, R., Gildea, B., Petersen, K.H., Hansen, H.F., Koch, T., Egholm, M., Buchardt, O., Nielsen, P.E., Coull, J., and Berg, R.H. (1995) Solid-phase synthesis of peptide nucleic acids. J. Pept. Sci. 1, 175-183
15. Donis-Keller, H. (1980) Phy M: an RNase activity specific for U and A residues useful in RNA sequence analysis. Nucleic Acids Res. 8, 3133-3142
16. Phe lacking the 'conserved' GG and T psi CG sequences as inferred by enzymatic and chemical probing. Nucleic Acids Res. 22, 347-353
17. Cavaille, J., Buiting, K., Kiefmann, M., Lalande, M., Brannan, C.I., Horsthemke, B., Bachellerie, J.P., Brosius, J., and Huttenhofer, A. (2000) Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. Proc. Natl Acad. Sci. USA 97, 14311-14316
18. Kishore, S. and Stamm, S. (2006) The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 311, 230-232