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Volumn 40, Issue 2, 1997, Pages 113-121

Computational analysis of triplex formation of oligonucleotides: Protonated and 5-methylated py-pu-py motif

Author keywords

Computational analysis; Screening effect; Stability; Triplex DNA

Indexed keywords


EID: 5344246623     PISSN: 10069291     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02876401     Document Type: Article
Times cited : (9)

References (22)
  • 1
    • 0021769970 scopus 로고
    • Poly(pyrimidine) · poly(purine) synthetic DNAs containing 5-methylcytosine from stable triplexes at neutral pH
    • Lee, J. S., Woodsworth, M. L., Latimer, L. J. P. et al., Poly(pyrimidine) · poly(purine) synthetic DNAs containing 5-methylcytosine from stable triplexes at neutral pH, Nucleic Acids Research, 1984, 12: 6603.
    • (1984) Nucleic Acids Research , vol.12 , pp. 6603
    • Lee, J.S.1    Woodsworth, M.L.2    Latimer, L.J.P.3
  • 4
    • 0016304026 scopus 로고
    • Structures for the polynucleotide complexes poly(dA)-poly(dT) and poly(dT)-poly(dA)-poly(dT)
    • Arnott, S., Selsing, E., Structures for the polynucleotide complexes poly(dA)-poly(dT) and poly(dT)-poly(dA)-poly(dT), J. Mol. Biol., 1974, 88:509.
    • (1974) J. Mol. Biol. , vol.88 , pp. 509
    • Arnott, S.1    Selsing, E.2
  • 6
    • 0028348628 scopus 로고
    • Effect of 5-methylcytosine on the structure and stability of DNA: Formation on triple-stranded cocatenamers by overlapping oligonucleotides
    • Xodo, L. M., Alunni-Fabbroni, M., Manizini, G., Effect of 5-methylcytosine on the structure and stability of DNA: Formation on triple-stranded cocatenamers by overlapping oligonucleotides, J. Biomol. Str. & Dyn., 1994, 11: 703.
    • (1994) J. Biomol. Str. & Dyn. , vol.11 , pp. 703
    • Xodo, L.M.1    Alunni-Fabbroni, M.2    Manizini, G.3
  • 7
    • 0025270759 scopus 로고
    • Sequence-specific artificial photoinduced endonucleases based on triple helix-forming oligonucleotides
    • Perrouault, L., Asseline, U., Rivalle, C. et al., Sequence-specific artificial photoinduced endonucleases based on triple helix-forming oligonucleotides, Nature, 1990, 334: 358.
    • (1990) Nature , vol.334 , pp. 358
    • Perrouault, L.1    Asseline, U.2    Rivalle, C.3
  • 8
    • 0024300366 scopus 로고
    • n: Chemical evidence for a three-stranded structure in plasmids
    • n: Chemical evidence for a three-stranded structure in plasmids, Science, 1988, 241: 1800.
    • (1988) Science , vol.241 , pp. 1800
    • Johnstone, B.H.1
  • 9
    • 0025817256 scopus 로고
    • Second structure modif for recognition of DNA by oligonucleotide-directed triple-helix formation
    • Beal, P. A., Dervan, P. B., Second structure modif for recognition of DNA by oligonucleotide-directed triple-helix formation, Science, 1991, 251: 1360.
    • (1991) Science , vol.251 , pp. 1360
    • Beal, P.A.1    Dervan, P.B.2
  • 10
    • 0024357372 scopus 로고
    • Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation
    • Maher, L., J. III, Wold, B., Dervan, P. B., Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation, Science, 1989, 245: 725.
    • (1989) Science , vol.245 , pp. 725
    • Maher III, L.J.1    Wold, B.2    Dervan, P.B.3
  • 11
    • 0025744428 scopus 로고
    • Evidence that a triplex-forming oligonucleotide binds to the c-myc promoter in HeLa cells, thereby reducing c-myc mRNA levels
    • Postel, E. H., Flint, S. J., Kessler, D. J. et al., Evidence that a triplex-forming oligonucleotide binds to the c-myc promoter in HeLa cells, thereby reducing c-myc mRNA levels, Proc. Natl. Acad. Sci. USA, 1991, 88: 8227.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 8227
    • Postel, E.H.1    Flint, S.J.2    Kessler, D.J.3
  • 12
    • 0018774697 scopus 로고
    • Specific DNA methylation sites in the vincinty of the chicken β-glubin genes
    • Mcghee, J. D., Ginder, G. D., Specific DNA methylation sites in the vincinty of the chicken β-glubin genes, Nature, 1979, 280: 419.
    • (1979) Nature , vol.280 , pp. 419
    • Mcghee, J.D.1    Ginder, G.D.2
  • 13
    • 0000682687 scopus 로고
    • Sequence-specific bifunctional DNA ligands based on triple-helix-forming oligonucleotides inhibit restriction enzyme
    • Collier, D. A., Thuong, N. T., Hellen, C., J. A., Sequence-specific bifunctional DNA ligands based on triple-helix-forming oligonucleotides inhibit restriction enzyme, J. Am. Chem. Soc., 1991, 113: 1457.
    • (1991) J. Am. Chem. Soc. , vol.113 , pp. 1457
    • Collier, D.A.1    Thuong, N.T.2    Hellen, C.J.A.3
  • 14
    • 0001272848 scopus 로고
    • A DNA hairpin as a target for antisenee oligonucleotides
    • Brossalina, E., Toulme, J-J., A DNA hairpin as a target for antisenee oligonucleotides, J. Am. Chem. Soc., 1993, 115; 796.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 796
    • Brossalina, E.1    Toulme, J.-J.2
  • 15
    • 0028990356 scopus 로고
    • 2G a hairpin triplex with three T. at and three C + · GC bases triads
    • 2G a hairpin triplex with three T. AT and three C + · GC bases triads, J. Biomol. Struct. & Dyn., 1995, 12: 1235.
    • (1995) J. Biomol. Struct. & Dyn. , vol.12 , pp. 1235
    • Tsay, L.M.1    Lin, S.B.2    Tsay, H.T.3
  • 16
    • 0015173689 scopus 로고
    • Volume changes accompanying the complex formation of polyadenyic and polyuridylic acids
    • Noguchi, H., Arya, S. K., Yang, J. T., Volume changes accompanying the complex formation of polyadenyic and polyuridylic acids, Biopolymers, 1971, 10: 2491.
    • (1971) Biopolymers , vol.10 , pp. 2491
    • Noguchi, H.1    Arya, S.K.2    Yang, J.T.3
  • 17
    • 0023667625 scopus 로고
    • Base stacking and molecular polarizability: Effect of methyl group in the 5-position of pyrimidines
    • Sowers, L. C., Shaw, B. R., Sedwick, W. D., Base stacking and molecular polarizability: Effect of methyl group in the 5-position of pyrimidines, Biochem . Biophys. Res. Comm., 1987, 148: 790.
    • (1987) Biochem . Biophys. Res. Comm. , vol.148 , pp. 790
    • Sowers, L.C.1    Shaw, B.R.2    Sedwick, W.D.3
  • 19
    • 0006066189 scopus 로고
    • Thermodynamic and conformational characterization of 5-methylcytosine-versue cytosine-substituted oligomers in DNA triple helices: Ab initio quantum mechanical and free energy perturbations studies
    • Hausheer, F. H., Singh, U. C., Saxe, J. D. et al., Thermodynamic and conformational characterization of 5-methylcytosine-versue cytosine-substituted oligomers in DNA triple helices: Ab initio quantum mechanical and free energy perturbations studies, J. Am. Chem. Soc., 1992, 114: 5356.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 5356
    • Hausheer, F.H.1    Singh, U.C.2    Saxe, J.D.3
  • 20
    • 0021757436 scopus 로고
    • A new force field for molecular mechanical simulation of nucleic acids and proteins
    • Weiner, S. J., Kollman, P. A., Case, D. A. et al., A new force field for molecular mechanical simulation of nucleic acids and proteins, J. Am. Chem. Soc., 1984, 106: 765.
    • (1984) J. Am. Chem. Soc. , vol.106 , pp. 765
    • Weiner, S.J.1    Kollman, P.A.2    Case, D.A.3
  • 22
    • 0017806585 scopus 로고
    • Nucleic acid-water interactions
    • Texter, J., Nucleic acid-water interactions, Prog. Biophys. Molec. Biol., 1978, 33:83.
    • (1978) Prog. Biophys. Molec. Biol. , vol.33 , pp. 83
    • Texter, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.