Gene expression analysis in citrus reveals the role of gibberellins on photosynthesis and stress

Plant, Cell and Environment

Volumn 31, Issue 11, 2008, Pages 1620-1633

  Huerta, Laura ^a   Forment, Javier ^a   Gadea, José ^a   Fagoaga, Carmen ^b   Peña, Leandro ^b   Pérez Amador, Miguel A ^a   García Martínez, José Luis ^a  

^a Ciudad Politécnica de la Innovación   (Spain)

^b INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

Author keywords

Abiotic stress; Biotic stress; Carbon utilization; Microarray; Protein synthesis; Ribosome biogenesis; Transgenics

Indexed keywords

GIBBERELLIN; MIXED FUNCTION OXIDASE; PHYTOHORMONE; PLANT RNA;

BIOTIC FACTOR; DICOTYLEDON; DNA; ENVIRONMENTAL STRESS; FUNCTIONAL GROUP; GENE EXPRESSION; HORMONE; HYBRID; NUTRIENT USE; PHOTOSYNTHESIS; PROTEIN; TRANSGENIC PLANT;

ARTICLE; CITRUS FRUIT; DNA MICROARRAY; DRUG EFFECT; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHOTOSYNTHESIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TRANSGENIC PLANT;

CITRUS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GIBBERELLINS; MIXED FUNCTION OXYGENASES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHOTOSYNTHESIS; PLANT GROWTH REGULATORS; PLANTS, GENETICALLY MODIFIED; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, PLANT;

CITRONCIRUS WEBBERI; CITRUS; CITRUS SINENSIS; CITRUS SINENSIS X PONCIRUS TRIFOLIATA; PONCIRUS TRIFOLIATA;

EID: 53349173810     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/j.1365-3040.2008.01870.x     Document Type: Article

References (58)

1. Achard P., Cheng H., De Grauwe L., Decat J., Schoutteten H., Moritz T., Van Der Straeten D., Peng J. Harberd N.P. (2006) Integration of plant responses to environmentally activated phytohormonal signals. Science 5757, 91 94.
2. Achard P., Renou J.P., Berthomé R., Harberd N.P. Genschik P. (2008) Plant DELLAs Restrain Growth and Promote Survival of Adversity by Reducing the Levels of Reactive Oxygen Species. Current Biology 18, 656 660.
3. Aharoni A., Dixit S., Jetter R., Thoenes E., van Arkel G. Pereira A. (2004) The SHINE Clade of AP2 Domain Transcription Factors Activates Wax Biosynthesis, Alters Cuticle Properties, and Confers Drought Tolerance when Overexpressed in Arabidopsis. The Plant Cell 16, 2463 2480.
4. Andersen S.U., Buechel S., Zhao Z., Ljung K., Novák O., Busch W., Schuster C. Lohmann J.U. (2008) Requirement of B2-type cyclin-dependent kinases for meristem integrity in Arabidopsis thaliana. The Plant Cell 20, 88 100.
5. Ashburner M., Ball C.A., Blake J.A. et al. (2000) Gene Ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics 25, 25 29.
6. Benjamini Y. Hochberg Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal Research of Statistic Society 57, 289 300.
7. Bhatt A.M., Etchells J.P., Canales C., Lagodienko A. Dickinson H. (2004) VAAMANA - a BEL1-like homeodomain protein, interacts with KNOX proteins BP and STM and regulates inflorescence stem growth in Arabidopsis. Gene 17, 103 111.
8. Biemelt S., Tschiersch H. Sonnewald U. (2004) Impact of Altered Gibberellin Metabolism on Biomass Accumulation, Lignin Biosynthesis, and Photosynthesis in Transgenic Tobacco Plants. Plant Physiology 135, 254 265.
9. Bulley S.M., Wilson F.M., Hedden P., Phillips A.L., Croker S.J. James D.J. (2005) Modification of gibberellin biosynthesis in the grafted apple scion allows control of tree height independent of the rootstock. Plant Biotechnology Journal 3, 215 223.
10. Cellier F., Conejero G., Breitler J.C. Casse F. (1998) Molecular and physiological responses to water deficit in drought-tolerant and drought-sensitive lines of sunflower. Accumulation of dehydrin transcripts correlates with tolerance. Plant Physiology 116, 319 328.
11. Chen X., Goodwin S.M., Boroff V.L., Liu X. Jenks M.A. (2003) Cloning and characterization of the WAX2 gene of Arabidopsis involved in cuticle membrane and wax production. The Plant Cell 15, 1170 1185.
12. Coles J.P., Phillips A.L., Croker S.J., García-Lepe R., Lewis M.J. Hedden P. (1999) Modification of gibberellin production and plant development in Arabidopsis by snse and antisense expression of gibberellin 20-oxidase genes. The Plant Journal 17, 547 556.
13. Cosgrove D.J. (2005) Growth of the plant cell wall. Nature Reviews Molecular Cell Biology 6, 850 861.
14. Cramer M.D., Nagel O.W., Lips S.H. Lambers H. (1995) Reduction, assimilation and transport of N in normal and gibberellin-deficient tomato plants. Physiologia Plantarum 95, 347 354.
15. Dai M., Zhao Y., Ma Q., Hu Y., Hedden P., Zhang Q. Zhou D.X. (2007) The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiology 144, 121 133.
16. Dijkstra P., Ter Reegen H. Kuiper P.J.C. (1990) Relation between relative growth rate, endogenous gibberellins and the response to applied gibberellic acid for Plantago major. Physiologia Plantarum 79, 629 634.
17. 2? Annual Review of Plant Physiology and Plant Molecular Biology 48, 609 639.
18. Eddy S.R. (1998) Profile hidden Markov models. Bioinformatics 14, 755 763.
19. Eriksson M.E., Israelsson M., Olsson O. Moritz T. (2000) Increased gibberellin biosynthesis in transgenic trees promotes growth, biomass production and xylem fiber length. Nature Biotechnology 18, 784 788.
20. Eulgem T., Rushton P.J., Robatzek S. Somssich I.E. (2000) The WRKY superfamily of plant transcription factors. Trends in Plant Science 5, 199 206.
21. Fagoaga C., Tadeo F.R., Iglesias D.J., Huerta L., Lliso I., Vidal A.M., Talón M., Navarro L., García-Martínez J.L. Peña L. (2007) Engineering of gibberellin levels in citrus by sense and antisense overexpression of a GA 20-oxidase gene modifies plant architecture. Journal of Experimental Botany 58, 1407 1420.
22. Fleet C.M. Sun T.P. (2005) A DELLAcate balance: the role of gibberellin in plant morphogenesis. Current Opinion in Plant Biology 8, 77 85.
23. Forment J., Gadea J., Huerta L. et al. (2005) Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies. Plant Molecular Biology 57, 375 391.
24. Hayat S., Ahmad A., Mobin M., Fariduddin Q. Azam Z.M. (2001) Carbonic anhydrase, photosynthesis, and seed yield in mustard plants treated with phytohormones. Photosynthetica 39, 111 114.
25. Heim M.A., Jakoby M., Werber M., Martin C., Weisshaar B. Bailey P.C. (2003) The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Molecular Biology and Evolution 20, 735 747.
26. Israelsson M., Eriksson M.E., Hertzberg M., Aspeborg H., Nilsson O. Moriz T. (2003) Changes in the wood-forming tissue of transgenic hybrid aspen with increased secondary growth. Plant Molecular Biology 52, 893 903.
27. Jacobsen J.V. Beach L.R. (1985) Control of transcription of a-amylase and rRNA genes in barley aleurone protoplasts by gibberellin and abscisic acid. Nature 316, 275 277.
28. Jan A., Yang G., Nakamura H., Ichikawa H., Kitano H., Matsuoka M., Matsumoto H. Komatsu S. (2004) Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice. Plant Physiology 136, 3670 3681.
29. Kavi-Kishor P.B., Hong Z., Miao G.H., Hu C.A.A. Verma D.P.S. (1995) Over-expression of delta-pyrroline-5-carboxylate synthetase increases proline production and confers osmotolerance in transgenic plants. Plant Physiology 108, 1387 1394.
30. Kim J.K., Jang I.C., Wu R., Zuo W.N., Boston R.S., Lee Y.H., Ahn I.P. Nahm B.H. (2003) Co-expression of a modified maize ribosome-inactivating protein and a rice basic chitinase gene in transgenic rice plants confers enhanced resistance to sheath blight. Transgenic Research 12, 475 484.
31. Konishi H., Yamane H., Maeshima M. Komatsu S. (2004) Characterization of fructose-bisphosphate aldolase regulated by gibberellin in roots of rice seedling. Plant Molecular Biology 56, 839 848.
32. Kwak K.J., Kim J.Y., Kim Y.O. Kang H. (2007) Characterization of transgenic Arabidopsis plants overexpressing high mobility group B proteins under high salinity, drought or cold stress. Plant and Cell Physiology 48, 221 231.
33. Lopez C.G., Banowetz G., Peterson C.J. Kronstad W.E. (2001) Differential accumulation of a 24-kd dehydrin protein in wheat seedlings correlates with drought stress tolerance at grain filling. Hereditas 135, 175 181.
34. Magome H., Yamaguchi S., Hanada A., Kamiya Y. Oda K. (2004) Dwarf and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor. The Plant Journal 37, 720 729.
35. Malmberg R., Messing J. Sussex I. (1985) Molecular Biology of Plants. A Laboratory Course Manual. Cold Spring Harbor Laboratory Press, New York, NY, USA.
36. Nagel O.W. Lambers H. (2002) Changes in the acquisition and partitioning of carbon and nitrogen in the gibberellin-deficient mutants A70 and W335 of tomato (Solanum lycopersicum L.). Plant and Cell Environment 25, 883 891.
37. Navarro L., Bari R., Achard P., Lison P., Nemri A., Harberd N.P. Jones J.D.G. (2008) DELLAs Control Plant Immune Respnses by Modulating the Balance of Jasmonic Acid and Salicylic Acid Signaling. Current Biology 18, 650 655.
38. Norusis M.J. (1993) Documentation SPSS for Windows, SPSS, Inc., Chicago, IL.
39. Ogawa M., Hanada A., Yamauchi Y., Kuwahara A., Kamiya Y. Yamaguchi S. (2003) Gibberellin biosynthesis and response during Arabidopsis seed germination. The Plant Cell 15, 1591 1604.
40. Potter I. Fry S.C. (1993) Xyloglucan endotransglycosylase activity in pea internodes. Effects of applied gibberellic acid. Plant Physiology 103, 235 241.
41. Riechmann J.L. Ratcliffe O.J. (2000) A genomic perspective on plant transcription factors. Current Opinion in Plant Biology 3, 423 434.
42. Saunt J. (2000) Citrus varieties of the World. An Illustrated Guide, 2nd edn, Sinclair International Limited, Norwich, UK.
43. Sauter M. (1997) Differential expression of a CAK (cdc2-activating kinase)-like protein kinase, cyclins and cdc2 genes from rice during the cell cycle and in response to gibberellin. The Plant Journal 11, 181 190.
44. Scheible W.R. Pauly M. (2004) Glycosyltransferases and cell wall biosynthesis: novel players and insights. Current Opinion Plant Biology 7, 285 295.
45. Sponsel V. Hedden P. (2004) Gibberellin biosynthesis and inactivation. In Plant Hormones: Biosynthesis, Signal Transduction, Action¡ (ed. P. Davies) 3rd edn, pp. 63 94. Kluwer Acad Pub, Dordrecht, the Netherlands.
46. Street N.R., Skogström O., Sjödin A., Tucker J., Rodríguez-Acosta M., Nilsson P., Jansson S. Taylor G. (2006) The genetics and genomics of the drought response in Populus. The Plant Journal 48, 321 341.
47. Tusher V.G., Tibshirani R. Chu G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proceeding of the National Academy of Sciences of the United States of America 98, 5116 5121.
48. Vidal A.M., Gisbert C., Talon M., Primo-Millo E., Lopez-Diaz I. Garcia-Martinez J.L. (2001) The ectopic overexpression of a citrus gibberellin 20-oxidase enhances the non-13-hydroxylation pathway of gibberellin biosynthesis and induces an extremely elongated phenotype in tobacco. Physiologia Plantarum 112, 251 260.
49. Vidal A.M., Ben-Cheikh W., Talon M. Garcia-Martinez J.L. (2003) Regulation of gibberellin 20-oxidase gene expression and gibberellin content in citrus by temperature and citrus exocortis viroid. Planta 217, 442 448.
50. Xu D., Duan X., Wang B., Hong B., Ho T. Wu R. (1996) Expression of a late embryogenesis abundant protein gene, HVA1, from barley confers tolerance to water deficit and salt stress in transgenic rice. Plant Physiology 110, 249 257.
51. Yamaguchi-Shinozaki K., Koizumi M., Urao S. Shinozaki K. (1992) Molecular cloning and characterization of 9 cDNAs for genes that are responsive to desiccation in Arabidopsis thaliana: sequence analysis of one cDNA clone that encodes a putative transmembrane channel protein. Plant and Cell Physiology 33, 217 224.
52. Yamauchi Y., Ogawa M., Kuwahara A., Hanada A., Kamiya Y. Yamaguchi S. (2004) Activation of gibberellin biosynthesis and response pathways by low temperature during imbibition of Arabidopsis thaliana seeds. The Plant Cell 16, 367 378.
53. Yang G.X., Jan A., Shen S.H., Yazaki J., Ishikawa M., Shimatani Z., Kishimoto N., Kikuchi S., Matsumoto H. Komatsu S. (2004) Microaray analysis of brassinosteroids- and gibberellin-regulated gene expression in rice seedlings. Molecular and Genetic. Genomics 271, 468 478.
54. Yang Y.H., Dudoit S., Luu P., Lin D.M., Peng V., Ngai J. Speed T.P. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Research 30, e15.
55. Yanhui C., Xiaoyuan Y., Kun H. et al. (2006) The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Molecular Biology 60, 107 124.
56. Yazaki J., Kishimoto N., Nagata Y. et al. (2003) Genomics approach to abscisic acid- and gibberellin-responsive genes in rice. DNA Research 10, 249 261.
57. Yuan L. Xu D.Q. (2001) Stimulation effect of gibberellic acid short-term treatment on leaf photosynthesis related to the increase in RuBisCO content in broad bean and soybean. Photosynthetic Research 68, 39 47.
58. Zhu B., Choi D.W., Fenton R. Close T.J. (2000) Expression of the barley dehydrin multigene family and the development of freezing tolerance. Molecular and General Genetics 264, 145 153.