메뉴 건너뛰기




Volumn 21, Issue 8, 2008, Pages 1085-1093

FIND - A unified framework for neural data analysis

Author keywords

Coefficient of variation; Gamma process; Honey bee; Mushroom body; Neural activity data analysis; Open source toolbox; Point process simulation; Rat; Spike train analysis; Visual cortex

Indexed keywords

COEFFICIENT OF VARIATION; GAMMA PROCESS; HONEY BEE; MUSHROOM BODY; NEURAL ACTIVITY DATA ANALYSIS; OPEN SOURCE TOOLBOX; POINT PROCESS SIMULATION; RAT; SPIKE TRAIN ANALYSIS; VISUAL CORTEX;

EID: 53249119005     PISSN: 08936080     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neunet.2008.06.019     Document Type: Article
Times cited : (57)

References (48)
  • 3
    • 0036482863 scopus 로고    scopus 로고
    • The time-rescaling theorem and its application to neural spike train data analysis
    • Brown E.N., Barbieri R., Ventura V., Kaas R.E., and Frank L.M. The time-rescaling theorem and its application to neural spike train data analysis. Neural Computation 14 (2001) 325-346
    • (2001) Neural Computation , vol.14 , pp. 325-346
    • Brown, E.N.1    Barbieri, R.2    Ventura, V.3    Kaas, R.E.4    Frank, L.M.5
  • 4
    • 34547756344 scopus 로고    scopus 로고
    • Hebbian STDP in mushroom bodies facilitates the synchronous flow of olfactory information in locusts
    • Cassenaer S., and Laurent G. Hebbian STDP in mushroom bodies facilitates the synchronous flow of olfactory information in locusts. Nature 448 7154 (2007) 709-713
    • (2007) Nature , vol.448 , Issue.7154 , pp. 709-713
    • Cassenaer, S.1    Laurent, G.2
  • 7
    • 33746723492 scopus 로고    scopus 로고
    • Measurement of time-dependent changes in the irregularity of neural spiking
    • Davies R.M., Gerstein G.L., and Baker S.N. Measurement of time-dependent changes in the irregularity of neural spiking. Journal of Neurophysiology 96 (2006) 906-918
    • (2006) Journal of Neurophysiology , vol.96 , pp. 906-918
    • Davies, R.M.1    Gerstein, G.L.2    Baker, S.N.3
  • 9
    • 53249147931 scopus 로고    scopus 로고
    • Farkhooi, F., Strube, M., & Nawrot, M. P. Serial correlation in neural spike trains: experimental evidence, stochastic modelling, and single neuron variability (submitted for publication)
    • Farkhooi, F., Strube, M., & Nawrot, M. P. Serial correlation in neural spike trains: experimental evidence, stochastic modelling, and single neuron variability (submitted for publication)
  • 10
    • 53249117847 scopus 로고    scopus 로고
    • Gabriel, E., Fagg, G.E., Bosilca, G., Angskun, T., Dongarra, J.J., & Squyres, J.M. et al. (2004). Open MPI: Goals, concept, and design of a next generation MPI implementation. In Proceedings, 11th European PVM/MPI users' group meeting
    • Gabriel, E., Fagg, G.E., Bosilca, G., Angskun, T., Dongarra, J.J., & Squyres, J.M. et al. (2004). Open MPI: Goals, concept, and design of a next generation MPI implementation. In Proceedings, 11th European PVM/MPI users' group meeting
  • 12
    • 27144542730 scopus 로고    scopus 로고
    • Laminar organization of response properties in primary visual cortex of the gray squirrel (Sciurus carolinensis)
    • Heimel J.A., Van Hooser S.D., and Nelson S.B. Laminar organization of response properties in primary visual cortex of the gray squirrel (Sciurus carolinensis). Journal of Neurophysiology 94 5 (2005) 3538-3554
    • (2005) Journal of Neurophysiology , vol.94 , Issue.5 , pp. 3538-3554
    • Heimel, J.A.1    Van Hooser, S.D.2    Nelson, S.B.3
  • 13
  • 14
    • 33746475216 scopus 로고    scopus 로고
    • Laminar processing in the visual cortical column
    • Hirsch J.A., and Martinez L.M. Laminar processing in the visual cortical column. Current Opinion in Neurobiology 16 4 (2006) 377-384
    • (2006) Current Opinion in Neurobiology , vol.16 , Issue.4 , pp. 377-384
    • Hirsch, J.A.1    Martinez, L.M.2
  • 15
    • 0029894898 scopus 로고    scopus 로고
    • Comparison of discharge variability in vitro and in vivo in cat visual cortex neurons
    • Holt G.R., Softky W.R., Koch C., and Douglas R.J. Comparison of discharge variability in vitro and in vivo in cat visual cortex neurons. Journal of Neurophysiology 75 (1996) 1806-1814
    • (1996) Journal of Neurophysiology , vol.75 , pp. 1806-1814
    • Holt, G.R.1    Softky, W.R.2    Koch, C.3    Douglas, R.J.4
  • 16
    • 53249092540 scopus 로고    scopus 로고
    • van Horn, J., & van Pelt, J. (2008). In 1st INCF workshop on sustainability of neuroscience databases, 2007. Available at international neuroinformatics coordinating facility secretariat Stockholm, Sweden
    • van Horn, J., & van Pelt, J. (2008). In 1st INCF workshop on sustainability of neuroscience databases, 2007. Available at international neuroinformatics coordinating facility secretariat Stockholm, Sweden
  • 17
    • 0022646020 scopus 로고
    • Application of a point process model to responses of cat lateral superior olive units to ipsilateral tones
    • Johnson D.H., Tsuchitani C., Linebarger D.A., and Johnson M.J. Application of a point process model to responses of cat lateral superior olive units to ipsilateral tones. Hearing Research 21 (1986) 135-159
    • (1986) Hearing Research , vol.21 , pp. 135-159
    • Johnson, D.H.1    Tsuchitani, C.2    Linebarger, D.A.3    Johnson, M.J.4
  • 18
    • 0030447513 scopus 로고    scopus 로고
    • Point process models of single-neuron discharges
    • Johnson D.H. Point process models of single-neuron discharges. Journal of Computation Neuroscience 3 (1996) 275-299
    • (1996) Journal of Computation Neuroscience , vol.3 , pp. 275-299
    • Johnson, D.H.1
  • 19
    • 0028054742 scopus 로고
    • Laminar pattern of synaptic activity in rat primary visual cortex: comparison of in vivo and in vitro studies employing the current source density analysis
    • Kenan-Vaknin G., and Teyler T.J. Laminar pattern of synaptic activity in rat primary visual cortex: comparison of in vivo and in vitro studies employing the current source density analysis. Brain Research 635 1-2 (1994) 37-48
    • (1994) Brain Research , vol.635 , Issue.1-2 , pp. 37-48
    • Kenan-Vaknin, G.1    Teyler, T.J.2
  • 20
    • 53249113946 scopus 로고    scopus 로고
    • Krofczik, S., Menzel, R., & Nawrot, M. Odor and odor mixture encoding by antennal lobe projection neurons in the honeybee (submitted for publication)
    • Krofczik, S., Menzel, R., & Nawrot, M. Odor and odor mixture encoding by antennal lobe projection neurons in the honeybee (submitted for publication)
  • 22
    • 0028224434 scopus 로고
    • Odorant-induced oscillations in the mushroom bodies of the locust
    • Laurent G., and Naraghi M. Odorant-induced oscillations in the mushroom bodies of the locust. Journal of Neuroscience 14 5 Pt 2 (1994) 2993-3004
    • (1994) Journal of Neuroscience , vol.14 , Issue.5 PART 2 , pp. 2993-3004
    • Laurent, G.1    Naraghi, M.2
  • 23
    • 53249156612 scopus 로고    scopus 로고
    • Characterizing neural network dynamics: Analyzing neural activity data using the FIND-Toolbox
    • Program No. 319.11
    • Meier R., Gruen S., Boucsein C., Aertsen A., Boven K.H., and Egert U. Characterizing neural network dynamics: Analyzing neural activity data using the FIND-Toolbox. Soc. Neurosci. Abstr. (2007) Program No. 319.11
    • (2007) Soc. Neurosci. Abstr.
    • Meier, R.1    Gruen, S.2    Boucsein, C.3    Aertsen, A.4    Boven, K.H.5    Egert, U.6
  • 24
    • 53249098027 scopus 로고    scopus 로고
    • Meier, R., Garbers, C., Haeussler, U., Egert, U., & Aertsen, A. (2008). Nonlinear interdependencies in epileptiform network dynamics revealed with the FIND toolbox using distributed computing FENS Abstr. Vol. 4. 150.22
    • Meier, R., Garbers, C., Haeussler, U., Egert, U., & Aertsen, A. (2008). Nonlinear interdependencies in epileptiform network dynamics revealed with the FIND toolbox using distributed computing FENS Abstr. Vol. 4. 150.22
  • 25
    • 33749438552 scopus 로고    scopus 로고
    • Estimating spiking irregularities under changing environments
    • Miura K., Okada M., and Amari M. Estimating spiking irregularities under changing environments. Neural Computation 18 (2006) 2359-2386
    • (2006) Neural Computation , vol.18 , pp. 2359-2386
    • Miura, K.1    Okada, M.2    Amari, M.3
  • 26
    • 0018087478 scopus 로고
    • Prominent excitatory pathways in the cat visual cortex (A 17 and A 18): A current source density analysis of electrically evoked potentials
    • Mitzdorf U., and Singer W. Prominent excitatory pathways in the cat visual cortex (A 17 and A 18): A current source density analysis of electrically evoked potentials. Experimental Brain Research 33 3-4 (1978) 371-394
    • (1978) Experimental Brain Research , vol.33 , Issue.3-4 , pp. 371-394
    • Mitzdorf, U.1    Singer, W.2
  • 27
    • 20844460509 scopus 로고    scopus 로고
    • Advancing the boundaries of high-connectivity network simulation with distributed computing
    • Morrison A., Mehring C., Geisel T., Aertsen A.D., and Diesmann M. Advancing the boundaries of high-connectivity network simulation with distributed computing. Neural Computation 17 8 (2005) 1776-1801
    • (2005) Neural Computation , vol.17 , Issue.8 , pp. 1776-1801
    • Morrison, A.1    Mehring, C.2    Geisel, T.3    Aertsen, A.D.4    Diesmann, M.5
  • 28
    • 0142134888 scopus 로고    scopus 로고
    • Elimination of response latency variability in neuronal spike trains
    • Nawrot M.P., Aertsen A., and Rotter S. Elimination of response latency variability in neuronal spike trains. Biological Cybernetics 88 5 (2003) 321-334
    • (2003) Biological Cybernetics , vol.88 , Issue.5 , pp. 321-334
    • Nawrot, M.P.1    Aertsen, A.2    Rotter, S.3
  • 29
    • 0032744821 scopus 로고    scopus 로고
    • Single-trial estimation of neuronal firing rates: From single-neuron spike trains to population activity
    • Nawrot M., Aertsen A., and Rotter S. Single-trial estimation of neuronal firing rates: From single-neuron spike trains to population activity. Journal of Neuroscience Methods 94 1 (1999) 81-92
    • (1999) Journal of Neuroscience Methods , vol.94 , Issue.1 , pp. 81-92
    • Nawrot, M.1    Aertsen, A.2    Rotter, S.3
  • 30
    • 53249131347 scopus 로고    scopus 로고
    • Two methods for time-resolved inter-spike interval analysis
    • Nawrot M.P., and Benda J. Two methods for time-resolved inter-spike interval analysis. Berlin Neuroforum Abstracts (2006) 62
    • (2006) Berlin Neuroforum Abstracts , pp. 62
    • Nawrot, M.P.1    Benda, J.2
  • 32
    • 53249138457 scopus 로고    scopus 로고
    • Neurshare Consortium (2004). The Neuroshare API. Version 1.3. http://neuroshare.sourceforge.net/API-Documentation/NeuroshareAPI-1-3.pdf
    • Neurshare Consortium (2004). The Neuroshare API. Version 1.3. http://neuroshare.sourceforge.net/API-Documentation/NeuroshareAPI-1-3.pdf
  • 33
    • 0029257374 scopus 로고
    • Visual latencies in areas V1 and V2 of the macaque monkey
    • Nowak L.G., Munk M.H., Girard P., and Bullier J. Visual latencies in areas V1 and V2 of the macaque monkey. Visual Neuroscience 12 2 (1995) 371-384
    • (1995) Visual Neuroscience , vol.12 , Issue.2 , pp. 371-384
    • Nowak, L.G.1    Munk, M.H.2    Girard, P.3    Bullier, J.4
  • 35
    • 35548964304 scopus 로고    scopus 로고
    • Associative plasticity of mushroom body-extrinsic neurons during olfactory learning in honeybees
    • Okada R., Rybak J., Manz G., and Menzel R. Associative plasticity of mushroom body-extrinsic neurons during olfactory learning in honeybees. Journal of Neuroscience 27 43 (2007) 11736-11747
    • (2007) Journal of Neuroscience , vol.27 , Issue.43 , pp. 11736-11747
    • Okada, R.1    Rybak, J.2    Manz, G.3    Menzel, R.4
  • 36
    • 0001473437 scopus 로고
    • On estimation of a probability density function and mode
    • Parzen E. On estimation of a probability density function and mode. Annals of Mathematical Statistics 33 (1962) 1065-1076
    • (1962) Annals of Mathematical Statistics , vol.33 , pp. 1065-1076
    • Parzen, E.1
  • 37
    • 0014109171 scopus 로고
    • Neuronal spike trains and stochastic point processes. I. The single spike train
    • Perkel D.H., Gerstein G.L., and Moore G.P. Neuronal spike trains and stochastic point processes. I. The single spike train. Biophysical Journal 7 (1967) 391-418
    • (1967) Biophysical Journal , vol.7 , pp. 391-418
    • Perkel, D.H.1    Gerstein, G.L.2    Moore, G.P.3
  • 38
    • 0014104894 scopus 로고
    • Neuronal spike trains and stochastic point processes. II. Simultaneous spike trains
    • Perkel D.H., Gerstein G.L., and Moore G.P. Neuronal spike trains and stochastic point processes. II. Simultaneous spike trains. Biophysical Journal 7 (1967) 419-440
    • (1967) Biophysical Journal , vol.7 , pp. 419-440
    • Perkel, D.H.1    Gerstein, G.L.2    Moore, G.P.3
  • 40
    • 0032402153 scopus 로고    scopus 로고
    • The power ratio and the interval map: Spiking models and extracellular recordings
    • Reich D.S., Victor J.D., and Knight B.W. The power ratio and the interval map: Spiking models and extracellular recordings. Journal of Neuroscience 18 (1998) 10090-10104
    • (1998) Journal of Neuroscience , vol.18 , pp. 10090-10104
    • Reich, D.S.1    Victor, J.D.2    Knight, B.W.3
  • 41
    • 0042553279 scopus 로고
    • Smoothing and differentiation of data by simplified least squares procedures
    • Savitzky A., and Golay M.J.E. Smoothing and differentiation of data by simplified least squares procedures. Analytical Chemistry 36 (1964) 1627
    • (1964) Analytical Chemistry , vol.36 , pp. 1627
    • Savitzky, A.1    Golay, M.J.E.2
  • 43
    • 11844301619 scopus 로고    scopus 로고
    • A measure of local variation of inter-spike intervals
    • Shinomoto S., Miura K., and Koyama S. A measure of local variation of inter-spike intervals. Biosystems 79 (2005) 67-72
    • (2005) Biosystems , vol.79 , pp. 67-72
    • Shinomoto, S.1    Miura, K.2    Koyama, S.3
  • 44
    • 11844290435 scopus 로고
    • A theoretical analysis of neuronal variability
    • Stein R.B. A theoretical analysis of neuronal variability. Biophysical Journal 5 (1965) 173-194
    • (1965) Biophysical Journal , vol.5 , pp. 173-194
    • Stein, R.B.1
  • 45
    • 53249108218 scopus 로고    scopus 로고
    • Olfactory coding in the honeybee brain III. Sparseness, reliability and reward conditioning in alpha-lobe extrinsic neurons
    • 7th Göttingen meeting of the German neuroscience society
    • Strube M., Stiller S., Nawrot M.P., and Menzel R. Olfactory coding in the honeybee brain III. Sparseness, reliability and reward conditioning in alpha-lobe extrinsic neurons. 7th Göttingen meeting of the German neuroscience society. Suppl. Neuroforum 8 1 (2007) T20-3A
    • (2007) Suppl. Neuroforum , vol.8 , Issue.1
    • Strube, M.1    Stiller, S.2    Nawrot, M.P.3    Menzel, R.4
  • 48
    • 33749318081 scopus 로고    scopus 로고
    • Where's the real bottleneck in scientific computing?
    • 10.1511/2006.1.5
    • Wilson G.V. Where's the real bottleneck in scientific computing?. American Scientist 94 1 (2006) 5-6 10.1511/2006.1.5
    • (2006) American Scientist , vol.94 , Issue.1 , pp. 5-6
    • Wilson, G.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.