A highly optimized Grid deployment: The metagenomic analysis example

Studies in Health Technology and Informatics

Volumn 138, Issue , 2008, Pages 105-115

  Aparicio, Gabriel ^a   Blanquer, Ignacio ^a   Hernández, Vicente ^a  

^a UNIVERSITAT POLITÈCNICA DE VALÈNCIA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; BIOLOGY; FAILURE ANALYSIS; GENE ENCODING;

ALIGNMENT ANALYSIS; COMPARISON AND ANALYSIS; COMPUTATIONAL RESOURCES; CRITICAL EXPERIMENT; EUKARYOTIC SPECIES; GRID INFRASTRUCTURES; METAGENOMIC ANALYSIS; PRODUCTION ENVIRONMENTS;

DISTRIBUTED COMPUTER SYSTEMS;

ARTICLE; BIOLOGY; COMPUTER; COMPUTER ANALYSIS; COMPUTER INTERFACE; COMPUTER PROGRAM; DATA BASE; DNA SEQUENCE; GENETIC DATABASE; GENOMICS; HEALTH; HUMAN; MEDICAL RECORD; ORGANIZATION AND MANAGEMENT; SPAIN;

COMPUTATIONAL BIOLOGY; COMPUTERS; COMPUTING METHODOLOGIES; DATABASE MANAGEMENT SYSTEMS; DATABASES, GENETIC; GENOMICS; HUMANS; MEDICAL RECORDS SYSTEMS, COMPUTERIZED; SEQUENCE ANALYSIS, DNA; SOFTWARE; SPAIN; USER-COMPUTER INTERFACE; WORLD HEALTH;

EID: 53249108165     PISSN: 09269630     EISSN: 18798365     Source Type: Book Series    
DOI: None     Document Type: Conference Paper

References (12)

1. http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/information3.html
2. "Wide In Silico Docking On Malaria." http://wisdom.healthgrid. org
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4. R. Casado et al. Large scale genome comparison in a GRID infrastructure. BioinfoGRID Symposium 2007 at Milan, Italy in December 2007
5. P. Lio et al. Transcriptomics and phylogenetics applications in GRID. BioinfoGRID Symposium 2007 at Milan, Italy in December 2007
6. Gabriele A Trombetti et al. Data handling strategies for high throughput pyrosequencers. BMC Bioinformatics. 2007
7. mpiBLAST: Open-Source Parallel BLAST home page, http://mpiblast.lanl.gov/
8. National Centre for Biotechnology Information (NCBI) http://www.ncbi.nlm. nih.gov/
9. Grid Protein Sequence Analysis web portal, http://gpsa.ibcp.fr.
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11. "LightWeight Middleware for Grid Computing". http://glite.web.cern.ch/glite
12. G. Aparicio, I. Blanquer, V. Hernández, et al. Blast2GO goes Grid: Developing a Grid-Enabled Prototype for Functional Genomics Analysis, "HealthGrids: Challenges and Opportunities", HealthGrid 2006 Conference Proceedings, IOS Press Studies in Health Technologies and Informatics (ISBN I-58603-617-3), Vol. 120, Pag.: 194-204, 2006.