메뉴 건너뛰기




Volumn 138, Issue 1-2, 2008, Pages 11-22

Classification of proteins based on similarity of two-dimensional protein maps

Author keywords

Classification; Function prediction; Protein kinases; Protein similarity; Two dimensional maps

Indexed keywords

AMINO ACID; PHOSPHOTRANSFERASE; PROTEIN KINASE;

EID: 53149087021     PISSN: 03014622     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bpc.2008.08.004     Document Type: Article
Times cited : (3)

References (28)
  • 3
    • 17844401480 scopus 로고    scopus 로고
    • A comprehensive update of the sequence and structure classification of kinases
    • Cheek S., Ginalski K., Zhang H., and Grishin N. A comprehensive update of the sequence and structure classification of kinases. BMC Structural Biology 5 (2005) 6
    • (2005) BMC Structural Biology , vol.5 , pp. 6
    • Cheek, S.1    Ginalski, K.2    Zhang, H.3    Grishin, N.4
  • 4
    • 0028961335 scopus 로고
    • SCOP: a structural classification of proteins database for the investigation of sequence and structures
    • Murzin A., Brenner S., Hubbard T., and Chothia C. SCOP: a structural classification of proteins database for the investigation of sequence and structures. Journal of Molecular Biology 247 (1995) 536-540
    • (1995) Journal of Molecular Biology , vol.247 , pp. 536-540
    • Murzin, A.1    Brenner, S.2    Hubbard, T.3    Chothia, C.4
  • 6
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm L., and Sander C. Protein structure comparison by alignment of distance matrices. Journal of Molecular Biology 233 (1993) 123-138
    • (1993) Journal of Molecular Biology , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 7
    • 0033824470 scopus 로고    scopus 로고
    • DaliLite workbench for protein structure comparison
    • Holm L., and Park J. DaliLite workbench for protein structure comparison. Bioinformatics 16 (2000) 566-567
    • (2000) Bioinformatics , vol.16 , pp. 566-567
    • Holm, L.1    Park, J.2
  • 8
    • 4644334028 scopus 로고    scopus 로고
    • Evaluation of structural similarity based on reduced dimensionality representations of protein structure
    • Albrecht B., Grant G., and Richards W. Evaluation of structural similarity based on reduced dimensionality representations of protein structure. Protein Engineering, Design and Selection 17 (2004) 425-432
    • (2004) Protein Engineering, Design and Selection , vol.17 , pp. 425-432
    • Albrecht, B.1    Grant, G.2    Richards, W.3
  • 10
    • 0035815113 scopus 로고    scopus 로고
    • Evolution of function in protein superfamilies from a structural perspective
    • Todd A., Orengo C., and Thornton J. Evolution of function in protein superfamilies from a structural perspective. Journal of Molecular Biology 307 (2001) 1113-1143
    • (2001) Journal of Molecular Biology , vol.307 , pp. 1113-1143
    • Todd, A.1    Orengo, C.2    Thornton, J.3
  • 11
    • 0026345394 scopus 로고
    • Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members
    • Hanks S., and Quinn A. Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods in Enzymology 200 (1991) 38-62
    • (1991) Methods in Enzymology , vol.200 , pp. 38-62
    • Hanks, S.1    Quinn, A.2
  • 12
    • 0029020282 scopus 로고
    • The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification
    • Hanks S., and Hunter T. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB 9 (1995) 576-596
    • (1995) FASEB , vol.9 , pp. 576-596
    • Hanks, S.1    Hunter, T.2
  • 13
    • 0037030707 scopus 로고    scopus 로고
    • Structural classification of protein kinases using 3d molecular interaction field analysis of their ligand binding sites: target family landscapes
    • Naumann T., and Matter H. Structural classification of protein kinases using 3d molecular interaction field analysis of their ligand binding sites: target family landscapes. Journal of Medicinal Chemistry 45 (2002) 2366-2378
    • (2002) Journal of Medicinal Chemistry , vol.45 , pp. 2366-2378
    • Naumann, T.1    Matter, H.2
  • 19
    • 84986468488 scopus 로고
    • The application of molecular similarity calculations
    • Burt C., and Richards W. The application of molecular similarity calculations. Journal of Computational Chemistry 11 (1990) 1139-1146
    • (1990) Journal of Computational Chemistry , vol.11 , pp. 1139-1146
    • Burt, C.1    Richards, W.2
  • 20
    • 0025907472 scopus 로고
    • Amino acid similarity coefficients for protein modeling and sequence alignment derived from main-chain folding angles
    • Niefind K., and Schomburg D. Amino acid similarity coefficients for protein modeling and sequence alignment derived from main-chain folding angles. Journal of Molecular Biology 219 (1991) 481-497
    • (1991) Journal of Molecular Biology , vol.219 , pp. 481-497
    • Niefind, K.1    Schomburg, D.2
  • 23
    • 84987067987 scopus 로고
    • How similar is a molecule to another? An electron density measure of similarity between two molecular structures
    • Carbo R., Leyda L., and Arnau M. How similar is a molecule to another? An electron density measure of similarity between two molecular structures. International Journal of Quantum Chemistry 17 (1980) 1185-1189
    • (1980) International Journal of Quantum Chemistry , vol.17 , pp. 1185-1189
    • Carbo, R.1    Leyda, L.2    Arnau, M.3
  • 26
    • 0036839162 scopus 로고    scopus 로고
    • MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison
    • Ortiz A.R., Strauss C., and Olmea O. MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. Protein Science 11 (2002) 2606-2621
    • (2002) Protein Science , vol.11 , pp. 2606-2621
    • Ortiz, A.R.1    Strauss, C.2    Olmea, O.3
  • 27
    • 17644392830 scopus 로고    scopus 로고
    • TM-align: a protein structure alignment algorithm based on the TM-score
    • Zhang Y., and Skolnick J. TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Research 33 (2005) 2302-2309
    • (2005) Nucleic Acids Research , vol.33 , pp. 2302-2309
    • Zhang, Y.1    Skolnick, J.2
  • 28
    • 79951950177 scopus 로고    scopus 로고
    • URL http://CRAN.R-project.org/doc/FAQ/R-FAQ.html
    • Hornik K. The R FAQ (2008). http://CRAN.R-project.org/doc/FAQ/R-FAQ.html URL http://CRAN.R-project.org/doc/FAQ/R-FAQ.html
    • (2008) The R FAQ
    • Hornik, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.