메뉴 건너뛰기




Volumn 105, Issue 37, 2008, Pages 13971-13976

The short-sequence designs of isochores from the human genome

Author keywords

Amino acids; Chromatin structure; Codon usage; Dinucleotides; Trinucleotides

Indexed keywords

AMINO ACID; DINUCLEOTIDE; DNA; LIGAND; TRINUCLEOTIDE;

EID: 52949143105     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0803916105     Document Type: Article
Times cited : (25)

References (36)
  • 1
    • 0014385247 scopus 로고
    • Isolation and characterization of mouse and guinea pig satellite DNAs
    • Corneo G, Ginelli E, Soave C, Bernardi G (1968) Isolation and characterization of mouse and guinea pig satellite DNAs. Biochemistry 7:4373-4379.
    • (1968) Biochemistry , vol.7 , pp. 4373-4379
    • Corneo, G.1    Ginelli, E.2    Soave, C.3    Bernardi, G.4
  • 3
    • 0017105287 scopus 로고
    • An analysis of eukaryotic genomes by density gradient centrifugation
    • Thiery JP, Macaya G, Bernardi G (1976) An analysis of eukaryotic genomes by density gradient centrifugation. J Mol Biol 108:219-235.
    • (1976) J Mol Biol , vol.108 , pp. 219-235
    • Thiery, J.P.1    Macaya, G.2    Bernardi, G.3
  • 4
    • 0017173987 scopus 로고
    • An approach to the organization of eukaryotic genomes at a macromolecular level
    • Macaya G, Thiery JP, Bernardi G (1976) An approach to the organization of eukaryotic genomes at a macromolecular level. J Mol Biol 108:237-254.
    • (1976) J Mol Biol , vol.108 , pp. 237-254
    • Macaya, G.1    Thiery, J.P.2    Bernardi, G.3
  • 6
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander ES, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 7
    • 0000968381 scopus 로고
    • The relative homogeneity of microbial DNA
    • Rolfe R, Meselson M (1959) The relative homogeneity of microbial DNA. Proc Natl Acad Sci USA 45:1039-1043.
    • (1959) Proc Natl Acad Sci USA , vol.45 , pp. 1039-1043
    • Rolfe, R.1    Meselson, M.2
  • 9
    • 0019470162 scopus 로고
    • The major components of the mouse and human genomes: Preparation, basic properties and compositional heterogeneity
    • Cuny G, Soriano P, Macaya G, Bernardi G (1981) The major components of the mouse and human genomes: Preparation, basic properties and compositional heterogeneity. Eur J Biochem 111:227-233.
    • (1981) Eur J Biochem , vol.111 , pp. 227-233
    • Cuny, G.1    Soriano, P.2    Macaya, G.3    Bernardi, G.4
  • 10
    • 0035802410 scopus 로고    scopus 로고
    • Misunderstandings about isochores
    • Bernardi G (2001) Misunderstandings about isochores. Gene 276:3-13.
    • (2001) Gene , vol.276 , pp. 3-13
    • Bernardi, G.1
  • 11
    • 0021810948 scopus 로고
    • The mosaic genome of warm-blooded vertebrates
    • Bernardi G, et al. (1985) The mosaic genome of warm-blooded vertebrates. Science 228:953-958.
    • (1985) Science , vol.228 , pp. 953-958
    • Bernardi, G.1
  • 12
    • 0030603239 scopus 로고    scopus 로고
    • The gene distribution of the human genome
    • Zoubak S, Clay O, Bernardi G (1996) The gene distribution of the human genome. Gene 174:95-102.
    • (1996) Gene , vol.174 , pp. 95-102
    • Zoubak, S.1    Clay, O.2    Bernardi, G.3
  • 13
    • 73049131457 scopus 로고
    • Enzymatic synthesis of deoxyribonucleic acid
    • Josse J, Kaiser AD, Kornberg A (1961) Enzymatic synthesis of deoxyribonucleic acid. J Biol Chem 236:864-875.
    • (1961) J Biol Chem , vol.236 , pp. 864-875
    • Josse, J.1    Kaiser, A.D.2    Kornberg, A.3
  • 14
    • 0000899674 scopus 로고
    • Enzymatic syntesis of deoxyribonucleic acid
    • Swartz MN, Trautner TA, Kornberg A (1962) Enzymatic syntesis of deoxyribonucleic acid. J Biol Chem 237:1961-1967.
    • (1962) J Biol Chem , vol.237 , pp. 1961-1967
    • Swartz, M.N.1    Trautner, T.A.2    Kornberg, A.3
  • 16
  • 18
    • 0025944851 scopus 로고
    • CpG islands, genes and isochores in the genome of vertebrates
    • Aïssani B, Bernardi G (1991) CpG islands, genes and isochores in the genome of vertebrates. Gene 106:185-195.
    • (1991) Gene , vol.106 , pp. 185-195
    • Aïssani, B.1    Bernardi, G.2
  • 19
    • 0032509187 scopus 로고    scopus 로고
    • CpG doublets, CpG islands and Alu repeats in long human DNA sequences from different isochore families
    • Jabbari K, Bernardi G (1998) CpG doublets, CpG islands and Alu repeats in long human DNA sequences from different isochore families. Gene 224:123-128.
    • (1998) Gene , vol.224 , pp. 123-128
    • Jabbari, K.1    Bernardi, G.2
  • 20
    • 2942594082 scopus 로고    scopus 로고
    • Cytosine methylation and CpG, TpG (CpA) and TpA frequencies
    • Jabbari K, Bernardi G (2004) Cytosine methylation and CpG, TpG (CpA) and TpA frequencies. Gene 333:143-149.
    • (2004) Gene , vol.333 , pp. 143-149
    • Jabbari, K.1    Bernardi, G.2
  • 21
    • 52949088437 scopus 로고
    • PhD thesis Université Paris VII, Paris
    • Devillers-Thiery A (1974) PhD thesis (Université Paris VII, Paris).
    • (1974)
    • Devillers-Thiery, A.1
  • 22
    • 0029060923 scopus 로고
    • Dinucleotide relative abundance extremes: A genomic signature
    • Karlin S, Burge C (1995) Dinucleotide relative abundance extremes: A genomic signature. Trends Genet 11:283-290.
    • (1995) Trends Genet , vol.11 , pp. 283-290
    • Karlin, S.1    Burge, C.2
  • 23
    • 0035049521 scopus 로고    scopus 로고
    • Genome-scale compositional comparisons in eukaryotes
    • Gentles AJ, Karlin S (2001) Genome-scale compositional comparisons in eukaryotes. Genome Res 11:540-546.
    • (2001) Genome Res , vol.11 , pp. 540-546
    • Gentles, A.J.1    Karlin, S.2
  • 24
    • 0018788367 scopus 로고
    • Thermal stability and protein structure
    • Argos P, et al. (1979) Thermal stability and protein structure. Biochemistry 18:5698-5703.
    • (1979) Biochemistry , vol.18 , pp. 5698-5703
    • Argos, P.1
  • 25
    • 0037810546 scopus 로고    scopus 로고
    • Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens
    • Nishio Y, et al. (2003) Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens. Genome Res 13:1572-1579.
    • (2003) Genome Res , vol.13 , pp. 1572-1579
    • Nishio, Y.1
  • 26
    • 0022914759 scopus 로고
    • Compositional constraints and genome evolution
    • Bernardi G, Bernardi G (1986) Compositional constraints and genome evolution. J Mol Evol 24:1-11.
    • (1986) J Mol Evol , vol.24 , pp. 1-11
    • Bernardi, G.1    Bernardi, G.2
  • 27
    • 0026702486 scopus 로고
    • DNA structure from A to Z
    • Dickerson RE (1992) DNA structure from A to Z. Methods Enzymol 211:67-111.
    • (1992) Methods Enzymol , vol.211 , pp. 67-111
    • Dickerson, R.E.1
  • 29
    • 33747500567 scopus 로고    scopus 로고
    • A genomic code for nucleosome positioning
    • Segal E, et al. (2006) A genomic code for nucleosome positioning. Nature 442:772-778.
    • (2006) Nature , vol.442 , pp. 772-778
    • Segal, E.1
  • 30
    • 45449095669 scopus 로고    scopus 로고
    • Mapping Dnase I-hypersensitive sites on human isochores
    • Di Filippo M, Bernardi G (2008) Mapping Dnase I-hypersensitive sites on human isochores. Gene 419:62-65.
    • (2008) Gene , vol.419 , pp. 62-65
    • Di Filippo, M.1    Bernardi, G.2
  • 31
    • 0037202372 scopus 로고    scopus 로고
    • Localization of the gene-richest and the gene-poorest isochores in the interphase nuclei of mammals and birds
    • Saccone S, Federico C, Andreozzi L, D'Antoni S, Bernardi G (2002) Localization of the gene-richest and the gene-poorest isochores in the interphase nuclei of mammals and birds. Gene 300:169-178.
    • (2002) Gene , vol.300 , pp. 169-178
    • Saccone, S.1    Federico, C.2    Andreozzi, L.3    D'Antoni, S.4    Bernardi, G.5
  • 32
    • 85015069067 scopus 로고    scopus 로고
    • Controlling the double helix
    • Felsenfeld G, Groudine M (2003) Controlling the double helix. Nature 421:448-453.
    • (2003) Nature , vol.421 , pp. 448-453
    • Felsenfeld, G.1    Groudine, M.2
  • 33
    • 42149091628 scopus 로고    scopus 로고
    • Replication timing, chromosomal bands and isochores
    • Costantini M, Bernardi G (2008) Replication timing, chromosomal bands and isochores. Proc Natl Acad Sci USA 105:3433-3437.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 3433-3437
    • Costantini, M.1    Bernardi, G.2
  • 34
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium (2004) Finishing the euchromatic sequence of the human genome. Nature 431:931-945.
    • (2004) Nature , vol.431 , pp. 931-945
  • 35
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Kent WJ, et al. (2002) The human genome browser at UCSC. Genome Res 12:996-1006.
    • (2002) Genome Res , vol.12 , pp. 996-1006
    • Kent, W.J.1
  • 36
    • 0022856787 scopus 로고
    • An evolutionary perspective on synonymous codon usage in unicellular organisms
    • Sharp PM, Li WH (1986) An evolutionary perspective on synonymous codon usage in unicellular organisms. J Mol Evol 24:28-38.
    • (1986) J Mol Evol , vol.24 , pp. 28-38
    • Sharp, P.M.1    Li, W.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.