Screening genes that change expression during compression wood formation in Chamaecyparis obtusa

Tree Physiology

Volumn 28, Issue 9, 2008, Pages 1331-1340

  Yamashita, Saori ^a   Yoshida, Masato ^a   Yamamoto, Hiroyuki ^a   Okuyama, Takashi ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

Fluorescent differential display (FDD); Growth stress; Reaction wood; Reorientation; Xylem; Xylogenesis

Indexed keywords

COMPRESSION; CONIFEROUS TREE; DATABASE; GENE EXPRESSION; GENETIC ANALYSIS; HOMOLOGY; POLYMERASE CHAIN REACTION; WOOD;

CHAMAECYPARIS; CHAMAECYPARIS OBTUSA;

COMPLEMENTARY DNA;

ARTICLE; BIOMECHANICS; CHAMAECYPARIS; DNA SEQUENCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; HISTOLOGY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; WOOD;

BIOMECHANICS; CHAMAECYPARIS; DNA, COMPLEMENTARY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; WOOD;

EID: 52949137384     PISSN: 0829318X     EISSN: None     Source Type: Journal    
DOI: 10.1093/treephys/28.9.1331     Document Type: Article

References (39)

1. Allona, I., M. Quinn, E. Shoop et al. 1998. Analysis of xylem formation in pine by cDNA sequencing. Proc. Natl. Acad. Sci. USA 95:9693-9698.
2. Andersson-Gunnerås, S., J.M. Hellgren, S. Björklund, S. Regan, T. Moritz and B. Sundberg. 2003. Asymmetric expression of a poplar ACC oxidase controls ethylene production during gravitational induction of tension wood. Plant J. 34:339-349.
3. Archer, R.R. 1986. Growth stresses and strains in trees. In Springer Series in Wood Science. Ed. T.E. Timell. Springer-Verlag, Berlin, pp 1-2.
4. Bedon, F., J. Grima-Pettenati and J. Mackay. 2007. Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca). BMC Plant Biol. 7:17.
5. Cato, S., L. McMillan, L. Donaldson, T. Richardson, C. Echt and R. Gardner. 2006. Wood formation from the base to the crown in Pinus radiata: gradients of tracheid wall thickness, wood density, radial growth rate and gene expression. Plant Mol. Biol. 60:565-581.
6. Dolan, L. 1997. The role of ethylene in the development of plant form. J. Exp. Bot. 48:201-210.
7. Du, S. and F. Yamamoto. 2007. An overview of the biology of reaction wood formation. J. Integr. Plant Biol. 49:131-143.
8. Fukuda, H. 1996. Xylogenesis: initiation, progression, and cell death. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 299-325.
9. Gion, J.-M., C. Lalanne, G. Le Provost et al. 2005. The proteome of maritime pine wood forming tissue. Proteomics 5:3731-3751.
10. Ito, T., K. Kito, N. Adati, Y. Mitsui, H. Hagiwara and Y. Sakaki. 1994. Fluorescent differential display: arbitrarily primed RT-PCR fingerprinting on an automated DNA sequencer. FEBS Lett. 351:231-236.
11. Jain, M., A. Nijhawan, A.K. Tyagi and J.P. Khurana. 2006. Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochem. Biophys. Res. Commun. 345:646-651.
12. Kubler, H. 1987. Growth stresses in trees and related wood properties. For. Prod. Abstr. 10:61-119.
13. Le Provost, G., J. Paiva, D. Pot, J. Brach and C. Plomion. 2003. Seasonal variation in transcript accumulation in wood-forming tissues of maritime pine (Pinus pinaster Ait.) with emphasis on a cell wall glycine-rich protein. Planta 217:820-830.
14. Little, C.H.A. and L. Eklund. 1999. Ethylene in relation to compression wood formation in Abies balsamea shoots. Trees 13:173-177.
15. Lorenz, W.W. and J.F.D. Dean. 2002. SAGE profiling and demonstration of differential gene expression along the axial developmental gradient of lignifying xylem in loblolly pine (Pinus taeda). Tree Physiol. 22:301-310.
16. McDougall, G.J. 2000. A comparison of proteins from the developing xylem of compression and non-compression wood of branches of Sitka spruce (Picea sitchensis) reveals a differentially expressed laccase. J. Exp. Bot. 51:1395-1401.
17. Mukai, Y. and N. Yamamoto. 1997. DNA and RNA isolation method of woody plants. In PCR Experimental Protocols of Plants. Eds. K. Shimamoto and T. Sasaki. Shujunsha, Tokyo, pp 57-62. In Japanese.
18. Nicot, N., J.-F. Hausman, L. Hoffmann and D. Evers. 2005. Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J. Exp. Bot. 56:2907-2914.
19. Okuyama, T. 1993. Growth stresses in trees. Mokuzai Gakkaishi 39:747-756. In Japanese.
20. Okuyama, T., H. Takeda, H. Yamamoto and M. Yoshida. 1998. Relation between growth stress and lignin concentration in the cell wall: ultraviolet microscopic spectral analysis. J. Wood Sci. 44:83-89.
21. O'Malley, D.M., R. Whetten, W. Bao, C.-L. Chen and R.R. Sederoff. 1993. The role of laecase in lignification. Plant J. 4:751-757.
22. Plomion, C., C. Pionneau, J. Brach, P. Costa and H. Baillères. 2000. Compression wood-responsive proteins in developing xylem of maritime pine (Pinus pinaster Ait.). Plant Physiol. 123:959-969.
23. Plomion, C., G. Le Provost and A. Stokes. 2001. Wood formation in trees. Plant Physiol. 127:1513-1523.
24. Sato, Y., B. Wuli, R. Sederoff and R. Whetten. 2001. Molecular cloning and expression of eight laecase cDNAs in loblolly pine (Pinus taeda). J. Plant Res. 114:147-155.
25. Singh, A.P. and L.A. Donaldson. 1999. Ultrastructure of tracheid cell walls in radiate pine (Pinus radiata) mild compression wood. Can. J. Bot. 77:32-40.
26. Smirnoff, N. 1996. The function and metabolism of ascorbic acid in plants. Ann. Bot. 78:661-669.
27. Sterky, F., S. Regan, J. Karlsson et al. 1998. Gene discovery in the wood-forming tissues of poplar: analysis of 5,692 expressed sequence tags. Proc. Natl. Acad. Sci. USA 95:13,330-13,335.
28. Takahama, U. and T. Oniki. 1994. The association of ascorbate and ascorbate oxidase in the apoplast with IAA-enhaneed elongation of epicotyls from Vigna angularis. Plant Cell Physiol. 35:257-266.
29. Timell, T.E. 1986. Compression wood in gymnosperms, Vol. 1. Springer-Verlag, Berlin, 706 p.
30. Whetten, R., Y.-H. Sun, Y. Zhang and R. Sederoff. 2001. Functional genomics and cell wall biosynthesis in loblolly pine. Plant Mol. Biol. 47:275-291.
31. Wilson, B.F. and R.R. Archer. 1977. Reaction wood: induction and mechanical action. Annu. Rev. Plant Physiol. 28:23-43.
32. Yamamoto, H., T. Okuyama, M. Yoshida and K. Sugiyama. 1991. Generation process of growth stresses in cell walls. III. Growth stress in compression wood. Mokuzai Gakkaishi 37:94-100.
33. Yamashita, S., M. Yoshida, S. Takayama and T. Okuyama. 2007. Stem-righting mechanism in gymnosperm trees deduced from limitations in compression wood development. Ann. Bot. 99:487-493.
34. Yoshida, M. and T. Okuyama. 2002. Techniques for measuring growth stress on the xylem surface using strain and dial gauges. Holzforschung 56:461-467.
35. 3-treated branches of Prunus spachiana Kitamura f. spachiana cv. Plenarosea. J. Wood Sci. 45:368-372.
36. Yoshikawa, Y., H. Mukai, K. Asada, F. Hino and I. Kato. 1998. Differential display with carboxy-X-rhodamine-labeled primers and the selection of differentially amplified cDNA fragments without cloning. Anal. Biochem. 256:82-91.
37. Yumoto, M., S. Ishida and K. Fukazawa. 1983. Studies on the formation and structure of compression wood cells induced by artificial inclination in young trees of Picea glauca. IV. Gradation of the severity of compression wood tracheids. Res. Bull. Coll. Exp. For., Hokkaido Univ. 40:409-454.
38. Zhang, X.-H. and V.L. Chiang. 1997. Molecular cloning of 4-coumarate:coenzyme A ligase in loblolly pine and the roles of this enzyme in the biosynthesis of lignin in compression wood. Plant Physiol. 113:65-74.
39. Zhang, Y., R.R. Sederoff and I. Allona. 2000. Differential expression of genes encoding cell wall proteins in vascular tissues from vertical and bent loblolly pine trees. Tree Physiol. 20:457-466.