-
1
-
-
0031969441
-
Identification of a full-length cDNA for an endogenous retrovirus of miniature swine
-
Akiyoshi D.E., Denaro M., Zhu S., Greenstein J.L., Banerjee P., and Fishman J.A. Identification of a full-length cDNA for an endogenous retrovirus of miniature swine. J. Virol. 72 (1998) 4503-4507
-
(1998)
J. Virol.
, vol.72
, pp. 4503-4507
-
-
Akiyoshi, D.E.1
Denaro, M.2
Zhu, S.3
Greenstein, J.L.4
Banerjee, P.5
Fishman, J.A.6
-
2
-
-
0032536141
-
Long terminal repeats of human endogenous retrovirus K family (HERV-K) specifically bind host cell nuclear proteins
-
Akopov S.B., Nikolaev L.G., Khil P.P., Lebedev Y.B., and Sverdlov E.D. Long terminal repeats of human endogenous retrovirus K family (HERV-K) specifically bind host cell nuclear proteins. FEBS Lett. 421 (1998) 229-233
-
(1998)
FEBS Lett.
, vol.421
, pp. 229-233
-
-
Akopov, S.B.1
Nikolaev, L.G.2
Khil, P.P.3
Lebedev, Y.B.4
Sverdlov, E.D.5
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0028889290
-
Molecular cloning, sequence, and expression patterns of the human gene encoding CCAAT/enhancer binding protein alpha (C/EBP alpha)
-
Antonson P., and Xanthopoulos K.G. Molecular cloning, sequence, and expression patterns of the human gene encoding CCAAT/enhancer binding protein alpha (C/EBP alpha). Biochem. Biophys. Res. Commun. 215 (1995) 106-113
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.215
, pp. 106-113
-
-
Antonson, P.1
Xanthopoulos, K.G.2
-
5
-
-
0037379495
-
Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element
-
Bieche I., Laurent A., Laurendeau I., Duret L., Giovangrandi Y., Frendo J.L., Olivi M., Fausser J.L., Evain-Brion D., and Vidaud M. Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element. Biol. Reprod. 68 (2003) 1422-1429
-
(2003)
Biol. Reprod.
, vol.68
, pp. 1422-1429
-
-
Bieche, I.1
Laurent, A.2
Laurendeau, I.3
Duret, L.4
Giovangrandi, Y.5
Frendo, J.L.6
Olivi, M.7
Fausser, J.L.8
Evain-Brion, D.9
Vidaud, M.10
-
6
-
-
0037310273
-
Molecular characterization of the recent intragenomic spread of the murine endogenous retrovirus MuERV-L
-
Costas J. Molecular characterization of the recent intragenomic spread of the murine endogenous retrovirus MuERV-L. J. Mol. Evol. 56 (2003) 181-186
-
(2003)
J. Mol. Evol.
, vol.56
, pp. 181-186
-
-
Costas, J.1
-
7
-
-
0034724652
-
Solitary HERV-K LTRs possess bi-directional promoter activity and contain a negative regulatory element in the U5 region
-
Domansky A.N., Kopantzev E.P., Snezhkov E.V., Lebedev Y.B., Leib-Mosch C., and Sverdlov E.D. Solitary HERV-K LTRs possess bi-directional promoter activity and contain a negative regulatory element in the U5 region. FEBS Lett. 472 (2002) 191-195
-
(2002)
FEBS Lett.
, vol.472
, pp. 191-195
-
-
Domansky, A.N.1
Kopantzev, E.P.2
Snezhkov, E.V.3
Lebedev, Y.B.4
Leib-Mosch, C.5
Sverdlov, E.D.6
-
8
-
-
0242331629
-
An endogenous retroviral long terminal repeat is the dominant promoter for human beta1,3-galactosyltransferase 5 in the colon
-
Dunn C.A., Medstrand P., and Mager D.L. An endogenous retroviral long terminal repeat is the dominant promoter for human beta1,3-galactosyltransferase 5 in the colon. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 12841-12846
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 12841-12846
-
-
Dunn, C.A.1
Medstrand, P.2
Mager, D.L.3
-
9
-
-
32444436122
-
Transcription of two human genes from a bidirectional endogenous retrovirus promoter
-
Dunn C.A., Romanish M.T., Gutierrez L.E., van de Lagemaat L.N., and Mager D.L. Transcription of two human genes from a bidirectional endogenous retrovirus promoter. Gene 366 (2006) 335-342
-
(2006)
Gene
, vol.366
, pp. 335-342
-
-
Dunn, C.A.1
Romanish, M.T.2
Gutierrez, L.E.3
van de Lagemaat, L.N.4
Mager, D.L.5
-
10
-
-
34247333809
-
Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome
-
Han K., Konkel M.K., Xing J., Wang H., Lee J., Meyer T.J., Huang C.T., Sandifer E., Hebert K., Barnes E.W., Hubley R., Miller W., Smit A.F., Ullmer B., and Batzer M.A. Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome. Science 316 (2007) 238-240
-
(2007)
Science
, vol.316
, pp. 238-240
-
-
Han, K.1
Konkel, M.K.2
Xing, J.3
Wang, H.4
Lee, J.5
Meyer, T.J.6
Huang, C.T.7
Sandifer, E.8
Hebert, K.9
Barnes, E.W.10
Hubley, R.11
Miller, W.12
Smit, A.F.13
Ullmer, B.14
Batzer, M.A.15
-
11
-
-
0031860393
-
Databases on transcriptional regulation: TRANSFAC, TRRD, and COMPEL
-
Heinemeyer T., Wingender E., Reuter I., Hermjakob H., Kel A.E., Kel O.V., Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Kolpakov F.A., Podkolodny N.L., and Kolchanov N.A. Databases on transcriptional regulation: TRANSFAC, TRRD, and COMPEL. Nucleic Acids Res. 26 (1998) 364-370
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 364-370
-
-
Heinemeyer, T.1
Wingender, E.2
Reuter, I.3
Hermjakob, H.4
Kel, A.E.5
Kel, O.V.6
Ignatieva, E.V.7
Ananko, E.A.8
Podkolodnaya, O.A.9
Kolpakov, F.A.10
Podkolodny, N.L.11
Kolchanov, N.A.12
-
12
-
-
0041343292
-
Dorfin localizes to the ubiquitylated inclusions in Parkinson's disease, dementia with Lewy bodies, multiple system atrophy, and amyotrophic lateral sclerosis
-
Hishikawa N., Niwa J., Doyu M., Ito T., Ishigaki S., Hashizume Y., and Sobue G. Dorfin localizes to the ubiquitylated inclusions in Parkinson's disease, dementia with Lewy bodies, multiple system atrophy, and amyotrophic lateral sclerosis. Am. J. Pathol. 163 (2003) 609-619
-
(2003)
Am. J. Pathol.
, vol.163
, pp. 609-619
-
-
Hishikawa, N.1
Niwa, J.2
Doyu, M.3
Ito, T.4
Ishigaki, S.5
Hashizume, Y.6
Sobue, G.7
-
13
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 409 (2001) 860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
14
-
-
0027395052
-
Yamamoto M.Erythroid transcription factor GATA-1 is abundantly transcribed in mouse testis
-
Ito E., Toki T., Ishihara H., Ohtani H., Gu L., Yokoyama M., and Engel J.D. Yamamoto M.Erythroid transcription factor GATA-1 is abundantly transcribed in mouse testis. Nature 362 (1993) 466-468
-
(1993)
Nature
, vol.362
, pp. 466-468
-
-
Ito, E.1
Toki, T.2
Ishihara, H.3
Ohtani, H.4
Gu, L.5
Yokoyama, M.6
Engel, J.D.7
-
15
-
-
0042206574
-
Dorfin localizes to Lewy bodies and ubiquitylates synphilin-1
-
Ito T., Niwa J., Hishikawa N., Ishigaki S., Doyu M., and Sobue G. Dorfin localizes to Lewy bodies and ubiquitylates synphilin-1. J. Biol. Chem. 278 (2003) 29106-29114
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 29106-29114
-
-
Ito, T.1
Niwa, J.2
Hishikawa, N.3
Ishigaki, S.4
Doyu, M.5
Sobue, G.6
-
16
-
-
0034284437
-
Repbase update: a database and an electronic journal of repetitive elements
-
Jurka J. Repbase update: a database and an electronic journal of repetitive elements. Trends Genet. 16 (2000) 418-420
-
(2000)
Trends Genet.
, vol.16
, pp. 418-420
-
-
Jurka, J.1
-
17
-
-
0034641881
-
Two long homologous retroviral sequence blocks in proximal Yq11 cause AZFa microdeletions as a result of intrachromosomal recombination events
-
Kamp C., Hirschmann P., Voss H., Huellen K., and Vogt P.H. Two long homologous retroviral sequence blocks in proximal Yq11 cause AZFa microdeletions as a result of intrachromosomal recombination events. Hum. Mol. Genet. 9 (2000) 2563-2572
-
(2000)
Hum. Mol. Genet.
, vol.9
, pp. 2563-2572
-
-
Kamp, C.1
Hirschmann, P.2
Voss, H.3
Huellen, K.4
Vogt, P.H.5
-
18
-
-
0035836737
-
Retroviral RNA identified in the cerebrospinal fluids and brains of individuals with schizophrenia
-
Karlsson H., Bachmann S., Schröder J., McArthur J., Torrey E.F., and Yolken R.H. Retroviral RNA identified in the cerebrospinal fluids and brains of individuals with schizophrenia. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 4634-4639
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 4634-4639
-
-
Karlsson, H.1
Bachmann, S.2
Schröder, J.3
McArthur, J.4
Torrey, E.F.5
Yolken, R.H.6
-
19
-
-
0029958241
-
Molecular features of the TSPY gene of gibbons and Old World monkeys
-
Kim H.S., Hirai H., and Takenaka O. Molecular features of the TSPY gene of gibbons and Old World monkeys. Chrom. Res. 4 (1996) 500-506
-
(1996)
Chrom. Res.
, vol.4
, pp. 500-506
-
-
Kim, H.S.1
Hirai, H.2
Takenaka, O.3
-
20
-
-
0346157327
-
The origins and implications of Aluternative splicing
-
Kreahling J., and Graveley B.R. The origins and implications of Aluternative splicing. Trends Genet. 20 (2004) 1-4
-
(2004)
Trends Genet.
, vol.20
, pp. 1-4
-
-
Kreahling, J.1
Graveley, B.R.2
-
21
-
-
0242317345
-
Complex controls: the role of alternative promoters in mammalian genomes
-
Landry J.R., Mager D.L., and Wilhelm B.T. Complex controls: the role of alternative promoters in mammalian genomes. Trends Genet. 19 (2003) 640-648
-
(2003)
Trends Genet.
, vol.19
, pp. 640-648
-
-
Landry, J.R.1
Mager, D.L.2
Wilhelm, B.T.3
-
22
-
-
0036854278
-
The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter
-
Landry J.R., Rouhi A., Medstrand P., and Mager D.L. The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter. Mol. Biol. Evol. 19 (2002) 1934-1942
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1934-1942
-
-
Landry, J.R.1
Rouhi, A.2
Medstrand, P.3
Mager, D.L.4
-
23
-
-
0348109381
-
The role of GATA in mammalian reproduction
-
LaVoie H.A. The role of GATA in mammalian reproduction. Exp. Biol. Med. 228 (2003) 1282-1290
-
(2003)
Exp. Biol. Med.
, vol.228
, pp. 1282-1290
-
-
LaVoie, H.A.1
-
24
-
-
0038701605
-
The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons
-
Lev-Maor G., Sorek R., Shomron N., and Ast G. The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. Science 300 (2003) 1288-1291
-
(2003)
Science
, vol.300
, pp. 1288-1291
-
-
Lev-Maor, G.1
Sorek, R.2
Shomron, N.3
Ast, G.4
-
25
-
-
0035865239
-
Evolutionary analyses of the human genome
-
Li W.H., Gu Z., Wang H., and Nekrutenko A. Evolutionary analyses of the human genome. Nature 409 (2001) 847-849
-
(2001)
Nature
, vol.409
, pp. 847-849
-
-
Li, W.H.1
Gu, Z.2
Wang, H.3
Nekrutenko, A.4
-
26
-
-
20044386298
-
Parkin mediates nonclassical, proteasomal-independent ubiquitination of synphilin-1: implications for Lewy body formation
-
Lim K.L., Chew K.C., Tan J.M., Wang C., Chung K.K., Zhang Y., Tanaka Y., Smith W., Engelender S., Ross C.A., Dawson V.L., and Dawson T.M. Parkin mediates nonclassical, proteasomal-independent ubiquitination of synphilin-1: implications for Lewy body formation. J. Neurosci. 25 (2005) 2002-2009
-
(2005)
J. Neurosci.
, vol.25
, pp. 2002-2009
-
-
Lim, K.L.1
Chew, K.C.2
Tan, J.M.3
Wang, C.4
Chung, K.K.5
Zhang, Y.6
Tanaka, Y.7
Smith, W.8
Engelender, S.9
Ross, C.A.10
Dawson, V.L.11
Dawson, T.M.12
-
27
-
-
0035910527
-
Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-1 genes in human
-
Medstrand P., Landry J.R., and Mager D.L. Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-1 genes in human. J. Biol. Chem. 276 (2001) 1896-1903
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 1896-1903
-
-
Medstrand, P.1
Landry, J.R.2
Mager, D.L.3
-
28
-
-
0032773257
-
Molecular investigations implicate human endogenous retroviruses as mediators of anti-retroviral antibodies in autoimmune rheumatic disease
-
Nelson P.N., Lever A.M., Smith S., Pitman R., Murray P., Perera S.A., Westwood O.M., Hay F.C., Ejtehadi H.D., and Booth J.C. Molecular investigations implicate human endogenous retroviruses as mediators of anti-retroviral antibodies in autoimmune rheumatic disease. Immunol. Invest. 28 (1999) 277-289
-
(1999)
Immunol. Invest.
, vol.28
, pp. 277-289
-
-
Nelson, P.N.1
Lever, A.M.2
Smith, S.3
Pitman, R.4
Murray, P.5
Perera, S.A.6
Westwood, O.M.7
Hay, F.C.8
Ejtehadi, H.D.9
Booth, J.C.10
-
29
-
-
0034816123
-
A novel centrosomal ring-finger protein, dorfin, mediates ubiquitin ligase activity
-
Niwa J., Ishigaki S., Doyu M., Suzuki T., Tanaka K., and Sobue G. A novel centrosomal ring-finger protein, dorfin, mediates ubiquitin ligase activity. Biochem. Biophys. Res. Commun. 281 (2001) 2-7
-
(2001)
Biochem. Biophys. Res. Commun.
, vol.281
, pp. 2-7
-
-
Niwa, J.1
Ishigaki, S.2
Doyu, M.3
Suzuki, T.4
Tanaka, K.5
Sobue, G.6
-
30
-
-
33644768070
-
In vitro characterization of a koala retrovirus
-
Oliveira N.M., Farrell K.B., and Eiden M.V. In vitro characterization of a koala retrovirus. J. Virol. 80 (2006) 3104-3107
-
(2006)
J. Virol.
, vol.80
, pp. 3104-3107
-
-
Oliveira, N.M.1
Farrell, K.B.2
Eiden, M.V.3
-
31
-
-
1642462896
-
Endogenous betaretroviruses of sheep: teaching new lessons in retroviral interference and adaptation
-
Palmarini M., Mura M., and Spencer T.E. Endogenous betaretroviruses of sheep: teaching new lessons in retroviral interference and adaptation. J. Gen. Virol. 85 (2004) 1-13
-
(2004)
J. Gen. Virol.
, vol.85
, pp. 1-13
-
-
Palmarini, M.1
Mura, M.2
Spencer, T.E.3
-
32
-
-
0242317675
-
Experimental validation of novel and conventional approaches to quantitative real-time PCR data analysis
-
Peirson S.N., Butler J.N., and Foster R.G. Experimental validation of novel and conventional approaches to quantitative real-time PCR data analysis. Nucleic Acids Res. 31 (2003) e73
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Peirson, S.N.1
Butler, J.N.2
Foster, R.G.3
-
34
-
-
34547904256
-
Widely variable endogenous retroviral methylation levels in human placenta
-
Reiss D., Zhang Y., and Mager D.L. Widely variable endogenous retroviral methylation levels in human placenta. Nucleic Acids Res. 35 (2007) 4743-4754
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4743-4754
-
-
Reiss, D.1
Zhang, Y.2
Mager, D.L.3
-
35
-
-
0035915999
-
Cell type-specific expression and promoter activity of human endogenous retroviral long terminal repeats
-
Schon U., Seifarth W., Baust C., Hohenadl C., Erfle V., and Leib-Mosch C. Cell type-specific expression and promoter activity of human endogenous retroviral long terminal repeats. Virology 279 (2001) 280-291
-
(2001)
Virology
, vol.279
, pp. 280-291
-
-
Schon, U.1
Seifarth, W.2
Baust, C.3
Hohenadl, C.4
Erfle, V.5
Leib-Mosch, C.6
-
36
-
-
34748869000
-
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome
-
Sela N., Mersch B., Gal-Mark N., Lev-Maor G., Hotz-Wagenblatt A., and Ast G. Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome. Genome Biol. 8 (2007) R127
-
(2007)
Genome Biol.
, vol.8
-
-
Sela, N.1
Mersch, B.2
Gal-Mark, N.3
Lev-Maor, G.4
Hotz-Wagenblatt, A.5
Ast, G.6
-
37
-
-
33748983029
-
Transcriptional control of the HERV-H LTR element of the GSDML gene in human tissues and cancer cells
-
Sin H.S., Huh J.W., Kim D.S., Kang D.W., Min D.S., Kim T.H., Ha H.S., Kim H.S., Lee S.Y., and Kim H.S. Transcriptional control of the HERV-H LTR element of the GSDML gene in human tissues and cancer cells. Arch. Virol. 151 (2006) 1985-1994
-
(2006)
Arch. Virol.
, vol.151
, pp. 1985-1994
-
-
Sin, H.S.1
Huh, J.W.2
Kim, D.S.3
Kang, D.W.4
Min, D.S.5
Kim, T.H.6
Ha, H.S.7
Kim, H.S.8
Lee, S.Y.9
Kim, H.S.10
-
38
-
-
33845493042
-
Endogenous retrovirus-related sequences provide an alternative transcript of MCJ genes in human tissues and cancer cells
-
Sin H.S., Huh J.W., Kim D.S., Kim T.H., Ha H.S., Kim W.Y., Park H.K., Kim C.M., and Kim H.S. Endogenous retrovirus-related sequences provide an alternative transcript of MCJ genes in human tissues and cancer cells. Genes Genet. Syst. 81 (2006) 333-339
-
(2006)
Genes Genet. Syst.
, vol.81
, pp. 333-339
-
-
Sin, H.S.1
Huh, J.W.2
Kim, D.S.3
Kim, T.H.4
Ha, H.S.5
Kim, W.Y.6
Park, H.K.7
Kim, C.M.8
Kim, H.S.9
-
39
-
-
34748907400
-
The birth of new exons: mechanisms and evolutionary consequences
-
Sorek R. The birth of new exons: mechanisms and evolutionary consequences. RNA 13 (2007) 1603-1608
-
(2007)
RNA
, vol.13
, pp. 1603-1608
-
-
Sorek, R.1
-
40
-
-
0036064148
-
Alu-containing exons are alternatively spliced
-
Sorek R., Ast G., and Graur D. Alu-containing exons are alternatively spliced. Genome Res. 12 (2002) 1060-1067
-
(2002)
Genome Res.
, vol.12
, pp. 1060-1067
-
-
Sorek, R.1
Ast, G.2
Graur, D.3
-
41
-
-
1942534661
-
Minimal conditions for exonization of intronic sequences: 5′ splice site formation in alu exons
-
Sorek R., Lev-Maor G., Reznik M., Dagan T., Belinky F., Graur D., and Ast G. Minimal conditions for exonization of intronic sequences: 5′ splice site formation in alu exons. Mol. Cell 14 (2004) 221-231
-
(2004)
Mol. Cell
, vol.14
, pp. 221-231
-
-
Sorek, R.1
Lev-Maor, G.2
Reznik, M.3
Dagan, T.4
Belinky, F.5
Graur, D.6
Ast, G.7
-
42
-
-
0032557535
-
Perpetually mobile footprints of ancient infections in human genome
-
Sverdlov E.D. Perpetually mobile footprints of ancient infections in human genome. FEBS Lett. 428 (1998) 1-6
-
(1998)
FEBS Lett.
, vol.428
, pp. 1-6
-
-
Sverdlov, E.D.1
-
43
-
-
0033964662
-
Retroviruses and primate evolution
-
Sverdlov E.D. Retroviruses and primate evolution. Bioessays 22 (2000) 161-171
-
(2000)
Bioessays
, vol.22
, pp. 161-171
-
-
Sverdlov, E.D.1
-
44
-
-
0141561907
-
Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
-
van de Lagemaat L.N., Landry J.R., Mager D.L., and Medstrand P. Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions. Trends Genet. 19 (2003) 530-536
-
(2003)
Trends Genet.
, vol.19
, pp. 530-536
-
-
van de Lagemaat, L.N.1
Landry, J.R.2
Mager, D.L.3
Medstrand, P.4
-
45
-
-
33846085933
-
DNA sequence and comparative analysis of chimpanzee chromosome 22
-
Watanabe H., et al. DNA sequence and comparative analysis of chimpanzee chromosome 22. Nature 429 (2004) 328-382
-
(2004)
Nature
, vol.429
, pp. 328-382
-
-
Watanabe, H.1
|