Schema driven assignment and implementation of life science identifiers (LSIDs)

Journal of Biomedical Informatics

Volumn 41, Issue 5, 2008, Pages 730-738

  Bafna, Sapna ^a   Humphries, Julian ^b   Miranker, Daniel P ^a  

^a University of Texas at Austin   (United States)

^b UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

Biology; Export schema; LSID; Metadata; RDF; Resolution; Systematics; Trigger; View

Indexed keywords

ADMINISTRATIVE DATA PROCESSING; CONFORMAL MAPPING; LINGUISTICS; MANAGEMENT INFORMATION SYSTEMS; NETWORK ARCHITECTURE; QUERY LANGUAGES; SEMICONDUCTOR QUANTUM DOTS; STANDARDS;

ARCHIVED DATA; BIOLOGICAL DATA; BIOLOGY; CONTENT AND STRUCTURE; DATABASE ADMINISTRATOR; DOMAIN-SPECIFIC LANGUAGE; EXPORT SCHEMA; IMPLEMENTATION ARCHITECTURE; LIFE SCIENCES; LSID; METADATA; RDF; RELATIONAL DATABASE MANAGEMENT SYSTEM; RESOLUTION; RUN-TIME LIBRARIES; SYSTEMATICS; TRIGGER; VIEW;

DATABASE SYSTEMS;

ARCHITECTURE; ARTICLE; BIOMEDICINE; DATA BASE; INTEGRATION; LANGUAGE; PRIORITY JOURNAL;

ANIMALS; COMPUTATIONAL BIOLOGY; DATABASE MANAGEMENT SYSTEMS; DATABASES, FACTUAL; HUMANS; NATURAL LANGUAGE PROCESSING; ONLINE SYSTEMS; PROGRAMMING LANGUAGES; SOFTWARE DESIGN;

EID: 52949117136     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2008.05.014     Document Type: Article

References (17)

1. Adelberg B., Garcia-Molina H., and Widom J. The STRIP rule system for efficiently maintaining derived data. Proceedings of the ACM SIGMOD international conference on management of data (1997), Tucson, Arizona 147-158
2. In: Bafna S., and Miranker D.P. (Eds). LSID specification language for relational databases based on SQL Server 2000. Technical Report TR-06-51 (2006), Department of Computer Sciences, The University of Texas at Austin
3. de Laborda CP, Conrad S, 2005. Relational.OWL: a data and schema representation format based on OWL. 2nd APCCM2005, vol. 43.
4. Darwin Core. http://darwincore.calacademy.org/.
5. Digimorph. http://digimorph.org.
6. Garcia-Mollina, Ullman, Widom. Database systems: The complete book. Prentice Hall, October 2, 2001.
7. GenBank. http://www.ncbi.nlm.nih.gov/Genbank/.
8. In: Holmes F.L., Renn J., and Rheinberger H.J. (Eds). Reworking the bench: research notebooks in the history of science (2003), Springer
9. Life sciences identifiers specification. V1.0 http://www.omg.org/cgi-bin/doc?formal/04-12-01.
10. Smith D, Szekely B, April 5, 2005. LSID best practices. Available from: http://www-128.ibm.com/developerworks/opensource/library/os-lsidbp/.
11. PHP LSID resolution service implementation. Available from: http://biodiv.hyam.net/authority/readme.html.
12. SQL Views. http://www.w3schools.com/sql/sql_view.asp.
13. TreeBase. http://www.treebase.org/treebase.
14. uBio. http://www.ubio.org/.
15. UTCT. http://utct.tacc.utexas.edu.
16. UT CT LSID assigning and resolution services prototype. Available from: http://utct-test.tacc.utexas.edu/authority.
17. In: VanDeursen A., Klint P., and Visser J. (Eds). Domain-specific languages: an annotated bioliography. ACM SIGPLAN Notices (2000) 26-37 Vol. 35(6)