Identification and characterization of the bacterial d-gluconate dehydratase in Achromobacter xylosoxidans

Biotechnology and Bioprocess Engineering

Volumn 13, Issue 4, 2008, Pages 436-444

  Kim, Seonghun ^a   Lee, Sun Bok ^a  

^a Pohang University of Science and Technology (POSTECH)   (South Korea)

Author keywords

Achromobacter xylosoxidans; D gluconate dehydratase; Modified Entner Doudoroff pathway

Indexed keywords

BACTERIAL ENZYME; DEXTRO GLUCONATE DEHYDRATASE; DIHYDROXYACID DEHYDRATASE; ENOLASE; HYDROLYASE; PHOSPHOGLUCONATE DEHYDRATASE; UNCLASSIFIED DRUG;

ACHROMOBACTER XYLOSOXIDANS; AMINO TERMINAL SEQUENCE; ARTICLE; BIOCHEMISTRY; CLADISTICS; CLOSTRIDIUM ACETOBUTYLICUM; CONTROLLED STUDY; DNA SEQUENCE; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME PURIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; STREPTOMYCES COELICOLOR;

ACHROMOBACTER XYLOSOXIDANS; ARCHAEA; BACTERIA (MICROORGANISMS); CLOSTRIDIUM ACETOBUTYLICUM; STREPTOMYCES;

EID: 52749095777     PISSN: 12268372     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12257-008-0152-y     Document Type: Article

References (27)

1. Szymona, M. and M. Doudoroff (1958) Carbohydrate metabolism in Rhodopseudomonas sphreoides. J. Gen. Microbiol. 22: 167-183.
2. Andreesen, J. R. and G. Gottschalk (1969) The occurrence of a modified Entner-doudoroff pathway in Clostridium aceticum. Arch. Mikrobiol. 69: 160-170.
3. Bender, R., J. R. Andreesen, and G. Gottschalk (1971) 2-Keto-3-deoxygluconate, an intermediate in the fermentation of gluconate by clostridia. J. Bacteriol. 107: 570-573.
4. Romano, A. H. and T. Conway (1996) Evolution of carbohydrate metabolic pathways. Res. Microbiol. 147: 448-455.
5. Conway, T. (1992) The Entner-Doudoroff pathway: History, physiology and molecular biology. FEMS Microbiol. Rev. 103: 1-27.
6. Budgen, N. and M. J. Danson (1986) Metabolism of glucose via a modified Entner-Doudoroff pathway in the thermoacidophilic archaebacterium Thermoplasma acidophilum. FEBS Lett. 196: 207-210.
7. De Rosa, M., A. Gambacorta, B. Nicolaus, P. Giardina, E. Poerio, and V. Buonocore (1984) Glucose metabolism in the extreme thermoacidophilic archaebacterium Sulfolobus solfataricus. Biochem. J. 224: 407-414.
8. Bender, R. and G. Gottschalk (1973) Purification and properties of d-gluconate dehydratase from Clostridium pasteurianum. Eur. J. Biochem. 40: 309-321.
9. Kersters, K., J. Khan-Matsubara, L. Nelen, and J. De Ley (1971) Purification and properties of d-gluconate dehydratase from Achromobacter. Antonie van Leeuwenhoek 37: 233-246
10. Elzainy, T. A., M. M. Hassan, and A. M. Allam (1973) New pathway for nonphosphorylated degradation of gluconate by Aspergillus niger. J. Bacteriol. 114: 457-459.
11. Lamble, H. J., C. C. Milburn, G. L. Taylor, D. W. Hough, and M. J. Danson (2004) Gluconate dehydratase from the promiscuous Entner-Doudoroff pathway in Sulfolobus solfataricus. FEBS Lett. 576: 133-136.
12. Kim, S. and S. B. Lee (2005) Identification and characterization of Sulfolobus solfataricus d-gluconate dehydratase: A key enzyme in the non-phosphorylated Entner-Doudoroff pathway. Biochem. J. 387: 271-280.
13. Kersters, K. and J. De Ley (1975) d-Gluconate dehydratase from Alcaligenes. Methods Enzymol. 42: 301-304.
14. Gottschalk, G. and R. Bender (1982) d-Gluconate dehydratase from Clostridium pasteurianum. Methods Enzymol. 90: 283-287.
15. Kim, S. and S. B. Lee (2006) Characterization of Sulfolobus solfataricus 2-keto-3-deoxy-d-gluconate kinase in the modified Entner-Doudoroff pathway. Biosci. Biotechnol. Biochem. 70: 1308-1316.
16. Kim, S. and S. B. Lee (2006) Catalytic promiscuity in dihydroxy-acid dehydratase from the thermoacidophilic archaeon Sulfolobus solfataricus. J. Biochem. 139: 591-596.
17. Jung, J. H. and S. B. Lee (2005) Identification and characterization of Thermoplasma acidophilum 2-keto-3-deoxy-d-gluconate kinase: A new class of sugar kinases. Biotechnol. Bioprocess Eng. 10: 535-539.
18. +-specific aldehyde dehydrogenase. Biochem. J. 397: 131-138.
19. Noh, M., J. H. Jung, and S. B. Lee (2006) Purification and characterization of glycerate kinase from the thermoacidophilic archaeon Thermoplasma acidophilum: An enzyme belonging to the second glycerate kinase family. Biotechnol. Bioprocess Eng. 11: 344-350.
20. Kersters, K. and J. De Ley (1968) The occurrence of the Entner-Doudoroff pathway in bacteria. Antonie van Leeuwenhoek 34: 393-408.
21. Igra-Siegman, Y., H. Chmel, and C. Cobbs (1980) Clinical and laboratory characteristics of Achromobacter xylosoxidans infection. J. Clin. Microbiol. 11: 141-145.
22. Skoza, L. and S. Mohos (1976) Stable thiobarbituric acid chromophore with dimethyl sulphoxide. Application to sialic acid assay in analytical de-O-acetylation. Biochem. J. 159: 457-462.
23. Sambrook, J. and D. W. Russell (2001) Molecular Cloning: A Laboratory Manual. 3rd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
24. Thompson, J. D., D. G. Higgins, and T. J. Gibson (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
25. Henikoff, S. and J. G. Henikoff (1992) Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. USA 89: 10915-10919.
26. Perkins, D. N., D. J. Pappin, D. M. Creasy, and J. S. Cottrell (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20: 3551-3567.
27. Gerlt, J. A., P. C. Babbitt, and I. Rayment (2005) Divergent evolution in the enolase superfamily: The interplay of mechanism and specificity. Arch. Biochem. Biophys. 433: 59-70.