-
1
-
-
31144459030
-
RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses
-
1310650 16336043 10.1371/journal.pbio.0040003
-
Zhang T Breitbart M Lee WH Run JQ Wei CL Soh SW Hibberd ML Liu ET Rohwer F Ruan Y RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses PloS Biology 2006, 4(1):e3 1310650 16336043 10.1371/ journal.pbio.0040003
-
(2006)
PloS Biology
, vol.4
-
-
Zhang, T.1
Breitbart, M.2
Lee, W.H.3
Run, J.Q.4
Wei, C.L.5
Soh, S.W.6
Hibberd, M.L.7
Liu, E.T.8
Rohwer, F.9
Ruan, Y.10
-
2
-
-
18744377158
-
Microarray-based detection and genotyping of viral pathogens
-
137777 12429852 10.1073/pnas.242579699
-
Wang D Coscoy L Zylberberg M Avila PC Boushey HA Ganem D DeRisi JL Microarray-based detection and genotyping of viral pathogens Proc Natl Acad Sci USA 2002, 99(24):15687-15692 137777 12429852 10.1073/ pnas.242579699
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.24
, pp. 15687-15692
-
-
Wang, D.1
Coscoy, L.2
Zylberberg, M.3
Avila, P.C.4
Boushey, H.A.5
Ganem, D.6
DeRisi, J.L.7
-
3
-
-
33747193021
-
Robust sequence selection method used to develop the FluChip diagnostic microarray for influenza virus
-
1594657 16891503 10.1128/JCM.00135-06
-
Mehlmann M Dawson ED Townsend MB Smagala JA Moore CA Smith CB Cox NJ Kuchta RD Rowlen KL Robust sequence selection method used to develop the FluChip diagnostic microarray for influenza virus Journal of Clinical Microbiology 2006, 44(8):2857-2862 1594657 16891503 10.1128/JCM.00135-06
-
(2006)
Journal of Clinical Microbiology
, vol.44
, Issue.8
, pp. 2857-2862
-
-
Mehlmann, M.1
Dawson, E.D.2
Townsend, M.B.3
Smagala, J.A.4
Moore, C.A.5
Smith, C.B.6
Cox, N.J.7
Kuchta, R.D.8
Rowlen, K.L.9
-
4
-
-
33746621649
-
Design of Microarray Probes for Virus Identification and Detection of Emerging Viruses at the Genus Level
-
1523220 16643672 10.1186/1471-2105-7-232
-
Chou CC Lee TT Chen CH Hsiao HY Lin YL Ho MS Yang PC Peck K Design of Microarray Probes for Virus Identification and Detection of Emerging Viruses at the Genus Level BMC Bioinformatics 2006, 7:232 1523220 16643672 10.1186/1471-2105-7-232
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 232
-
-
Chou, C.C.1
Lee, T.T.2
Chen, C.H.3
Hsiao, H.Y.4
Lin, Y.L.5
Ho, M.S.6
Yang, P.C.7
Peck, K.8
-
5
-
-
0029968822
-
Improved Nearest-Neighbor Parameters for Predicting DNA Duplex Stability
-
10.1021/bi951907q 8639506
-
SantaLucia JJ Allawi HT Seneviratne PA Improved Nearest-Neighbor Parameters for Predicting DNA Duplex Stability Biochemistry 1996, 35:3555-3562 10.1021/bi951907q 8639506
-
(1996)
Biochemistry
, vol.35
, pp. 3555-3562
-
-
SantaLucia, J.J.1
Allawi, H.T.2
Seneviratne, P.A.3
-
6
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
10.1038/nbt1296-1675 9634850
-
Lockhart DJ Dong H Byrne MC Follettie MT Gallo MV Chee MS Mittmann M Wang C Kobayashi M Horton H Brown EL Expression monitoring by hybridization to high-density oligonucleotide arrays Nature Biotechnology 1996, 14:1675-1680 10.1038/nbt1296-1675 9634850
-
(1996)
Nature Biotechnology
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
7
-
-
4243142644
-
Viral discovery and sequence recovery using DNA microarrays
-
261870 14624234 10.1371/journal.pbio.0000002
-
Wang D Urisman A Liu YT Springer M Ksiazek TG Erdman DD Mardis ER Hickenbotham M Magrini V Eldred J Latreille JP Wilson RK Ganem D DeRisi JL Viral discovery and sequence recovery using DNA microarrays PloS Biology 2003, 1(2):e2 261870 14624234 10.1371/journal.pbio.0000002
-
(2003)
PloS Biology
, vol.1
, Issue.2
-
-
Wang, D.1
Urisman, A.2
Liu, Y.T.3
Springer, M.4
Ksiazek, T.G.5
Erdman, D.D.6
Mardis, E.R.7
Hickenbotham, M.8
Magrini, V.9
Eldred, J.10
Latreille, J.P.11
Wilson, R.K.12
Ganem, D.13
DeRisi, J.L.14
-
8
-
-
84960412788
-
Fast and accurate probe selection algorithm for large genomes
-
16452780
-
Sung WK Lee WH Fast and accurate probe selection algorithm for large genomes Proc IEEE Comput Soc Bioinform Conf 2003, 2:65-74 16452780
-
(2003)
Proc IEEE Comput Soc Bioinform Conf
, vol.2
, pp. 65-74
-
-
Sung, W.K.1
Lee, W.H.2
-
9
-
-
0036900267
-
Options available-from start to finish for obtaining data from DNA microarrays II
-
10.1038/ng1030 12454642
-
Holloway AJ Van Laar AK Tothill RW Bowtell DD Options available-from start to finish for obtaining data from DNA microarrays II Nature Genet 2002, 32:481-489 10.1038/ng1030 12454642
-
(2002)
Nature Genet
, vol.32
, pp. 481-489
-
-
Holloway, A.J.1
Van Laar, A.K.2
Tothill, R.W.3
Bowtell, D.D.4
-
10
-
-
0042424622
-
Microarray analysis of evolution of RNA viruses: Evidence of circulation of virulent highly divergent vaccine-derived polioviruses
-
170930 12878723 10.1073/pnas.1633511100
-
Cherkasova E Laassri M Chrizhikov V Korotkova E Dragunsky E Agol VL Chumakov K Microarray analysis of evolution of RNA viruses: Evidence of circulation of virulent highly divergent vaccine-derived polioviruses Proc Natl Acad Sci USA 2003, 100(6):9398-403 170930 12878723 10.1073/ pnas.1633511100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9398-9403
-
-
Cherkasova, E.1
Laassri, M.2
Chrizhikov, V.3
Korotkova, E.4
Dragunsky, E.5
Agol, V.L.6
Chumakov, K.7
-
11
-
-
33644850222
-
Options available for profiling small samples: A review of sample amplification technology when combined with microarray profiling
-
1363777 16473852 10.1093/nar/gkj499
-
Nygaard V Hovig E Options available for profiling small samples: A review of sample amplification technology when combined with microarray profiling Nucleic Acids Res 2006, 34(3):996-1014 1363777 16473852 10.1093/nar/gkj499
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.3
, pp. 996-1014
-
-
Nygaard, V.1
Hovig, E.2
-
12
-
-
14044265394
-
Pitfalls of Quantitative Real-Time Reverse-Transcription Polymerase Chain Reaction
-
2291693 15331581
-
Bustin SA Nolan T Pitfalls of Quantitative Real-Time Reverse-Transcription Polymerase Chain Reaction Journal of Biomolecular Techniques 2004, 15:155-166 2291693 15331581
-
(2004)
Journal of Biomolecular Techniques
, vol.15
, pp. 155-166
-
-
Bustin, S.A.1
Nolan, T.2
-
13
-
-
33746646474
-
Generation of non-genomic oligonucleotic tag sequences for RNA template-specific PCR
-
10.1186/1472-6750-6-31
-
Pinto FL Svensson H Lindblad P Generation of non-genomic oligonucleotic tag sequences for RNA template-specific PCR BMC Biotechology 2006, 6:31 10.1186/1472-6750-6-31
-
(2006)
BMC Biotechology
, vol.6
, pp. 31
-
-
Pinto, F.L.1
Svensson, H.2
Lindblad, P.3
-
14
-
-
34548838602
-
Optimization and clinical validation of a pathogen detection microarray
-
1929155 17531104 10.1186/gb-2007-8-5-r93
-
Wong CW Lee WH Leong WY Soh WL Kartasasmita CB Simoes AF Hibberd ML Sung WK Miller LD Optimization and clinical validation of a pathogen detection microarray Genome Biology 2007, 8:r93 1929155 17531104 10.1186/ gb-2007-8-5-r93
-
(2007)
Genome Biology
, vol.8
-
-
Wong, C.W.1
Lee, W.H.2
Leong, W.Y.3
Soh, W.L.4
Kartasasmita, C.B.5
Simoes, A.F.6
Hibberd, M.L.7
Sung, W.K.8
Miller, L.D.9
-
15
-
-
19444372403
-
Multiplex real time RT-PCR for the detection and quantitation of norovirus genogroups I and II in patients with acute gastroenteritis
-
10.1016/j.jcv.2004.12.014
-
Pang XL Preiksaitis JK Lee B Multiplex real time RT-PCR for the detection and quantitation of norovirus genogroups I and II in patients with acute gastroenteritis Journal of Clin Virol 2005, 33:168-171 10.1016/j.jcv.2004.12.014
-
(2005)
Journal of Clin Virol
, vol.33
, pp. 168-171
-
-
Pang, X.L.1
Preiksaitis, J.K.2
Lee, B.3
-
16
-
-
0027298218
-
Amplification of Megabase DNA with Tagged Random Primers (T-PCR)
-
309304 8464718 10.1093/nar/21.5.1321
-
Grothues D Smith CL Cantor CR Amplification of Megabase DNA with Tagged Random Primers (T-PCR) Nucleic Acids Research 1993, 21:1321-1322 309304 8464718 10.1093/nar/21.5.1321
-
(1993)
Nucleic Acids Research
, vol.21
, pp. 1321-1322
-
-
Grothues, D.1
Smith, C.L.2
Cantor, C.R.3
-
17
-
-
20444418081
-
Genomic DNA Amplification from a Single Bacterium
-
10.1128/AEM.71.6.3342-3347.2005
-
Raghunathan A Ferguson HR Jr Bornarth CJ Song W Driscoll M Lasken RS Genomic DNA Amplification from a Single Bacterium Applied and Environmental Microbiology 2005, 71(6):3342-3347 10.1128/ AEM.71.6.3342-3347.2005
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.6
, pp. 3342-3347
-
-
Raghunathan, A.1
Ferguson Jr., H.R.2
Bornarth, C.J.3
Song, W.4
Driscoll, M.5
Lasken, R.S.6
-
18
-
-
34548084879
-
Detection of Respiratory Viruses and Subtype Identification of Influenza A Viruses by GreeneChipResp Oligonucleotide Microarray
-
1951265 17553978 10.1128/JCM.00737-07
-
Quan PL Palacios G Jabado OJ Conlan S Hirschberg DL Pozo F Jack PJM Cisterna D Renwick N Hui J Drysdale A Amos-Ritchie R Baumeister E Savy V Lager KM Richt JA Boyle DB Garcia-Sastre A Casas I Perez-Brena P Briese T Lipkin WI Detection of Respiratory Viruses and Subtype Identification of Influenza A Viruses by GreeneChipResp Oligonucleotide Microarray J Clin Microbiol 2007, 45(8):2359-2364 1951265 17553978 10.1128/ JCM.00737-07
-
(2007)
J Clin Microbiol
, vol.45
, Issue.8
, pp. 2359-2364
-
-
Quan, P.L.1
Palacios, G.2
Jabado, O.J.3
Conlan, S.4
Hirschberg, D.L.5
Pozo, F.6
Jack, P.J.M.7
Cisterna, D.8
Renwick, N.9
Hui, J.10
Drysdale, A.11
Amos-Ritchie, R.12
Baumeister, E.13
Savy, V.14
Lager, K.M.15
Richt, J.A.16
Boyle, D.B.17
Garcia-Sastre, A.18
Casas, I.19
Perez-Brena, P.20
Briese, T.21
Lipkin, W.I.22
more..
-
19
-
-
0034667775
-
Minimizing the secondary structure of DNA targets by incorporation of a modified deoxynucleotide: Implications for nucleic acid analysis by hybridization
-
110783 11024169 10.1093/nar/28.20.3904
-
Nguyen HK Southern EM Minimizing the secondary structure of DNA targets by incorporation of a modified deoxynucleotide: Implications for nucleic acid analysis by hybridization Nucleic Acids Res 2000, 28:3904-3909 110783 11024169 10.1093/nar/28.20.3904
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3904-3909
-
-
Nguyen, H.K.1
Southern, E.M.2
-
20
-
-
0037232155
-
Simultaneous detection, subgrouping, and quantitation of respiratory syncytial virus A and B by real-time PCR
-
149607 12517840 10.1128/JCM.41.1.149-154.2003
-
Hu A Colella M Tam JS Rappaport R Cheng SM Simultaneous detection, subgrouping, and quantitation of respiratory syncytial virus A and B by real-time PCR J Clin Microbiol 2003, 41:149-154 149607 12517840 10.1128/ JCM.41.1.149-154.2003
-
(2003)
J Clin Microbiol
, vol.41
, pp. 149-154
-
-
Hu, A.1
Colella, M.2
Tam, J.S.3
Rappaport, R.4
Cheng, S.M.5
-
21
-
-
33748446393
-
Role of deficient type III interferon-lambda production in asthma exacerbations
-
10.1038/nm1462 16906156
-
Contoli M Message SD Laza-Stanca V Edwards MR Wark PA Bartlett NW Kebadze T Mallia P Stanciu LA Parker HL Slater L Lewis-Antes A Kon OM Holgate ST Davies DE Kotenko SV Papi A Johnston SL Role of deficient type III interferon-lambda production in asthma exacerbations Nat Med 2006, 12(9):1023-1026 10.1038/nm1462 16906156
-
(2006)
Nat Med
, vol.12
, Issue.9
, pp. 1023-1026
-
-
Contoli, M.1
Message, S.D.2
Laza-Stanca, V.3
Edwards, M.R.4
Wark, P.A.5
Bartlett, N.W.6
Kebadze, T.7
Mallia, P.8
Stanciu, L.A.9
Parker, H.L.10
Slater, L.11
Lewis-Antes, A.12
Kon, O.M.13
Holgate, S.T.14
Davies, D.E.15
Kotenko, S.V.16
Papi, A.17
Johnston, S.L.18
-
22
-
-
25444432585
-
A novel panacoronavirus RT-PCR assay: Frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium
-
10.1186/1471-2334-5-6
-
Moës E Vijgen L Keyaerts E Zlateva K Li S Maes P Pyrc K Berkhout B Hoek van der L Van Ranst M A novel panacoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium BMC Infectious Diseases 2006, 5:6 10.1186/1471-2334-5-6
-
(2006)
BMC Infectious Diseases
, vol.5
, pp. 6
-
-
Moës, E.1
Vijgen, L.2
Keyaerts, E.3
Zlateva, K.4
Li, S.5
Maes, P.6
Pyrc, K.7
Berkhout, B.8
Hoek, L.9
Van Ranst, M.10
-
25
-
-
84872264616
-
-
NCBI Taxonomy Database http://www.ncbi.nlm.nih.gov/Taxonomy/ taxonomyhome.html
-
NCBI Taxonomy Database
-
-
-
26
-
-
0036852098
-
Gene expression analysis using oligonucleotide arrays produced by maskless photolithography
-
187555 12421762 10.1101/gr.362402
-
Nuwaysir EF Huang W Albert TJ Singh J Nuwaysir K Pitas A Richmond T Gorski T Berg JP Ballin J McCormick M Norton J Pollock T Sumwalt T Butcher L Porter D Molla M Hall C Blattner F Sussman MR Wallace RL Cerrina F Green RD Gene expression analysis using oligonucleotide arrays produced by maskless photolithography Genome Res 2002, 12:1749-1755 187555 12421762 10.1101/gr.362402
-
(2002)
Genome Res
, vol.12
, pp. 1749-1755
-
-
Nuwaysir, E.F.1
Huang, W.2
Albert, T.J.3
Singh, J.4
Nuwaysir, K.5
Pitas, A.6
Richmond, T.7
Gorski, T.8
Berg, J.P.9
Ballin, J.10
McCormick, M.11
Norton, J.12
Pollock, T.13
Sumwalt, T.14
Butcher, L.15
Porter, D.16
Molla, M.17
Hall, C.18
Blattner, F.19
Sussman, M.R.20
Wallace, R.L.21
Cerrina, F.22
Green, R.D.23
more..
-
27
-
-
19944429794
-
Respiratory syncytial virus infection: Denominator-based studies in Indonesia, Mozambique, Nigeria and South Africa
-
15654405
-
Robertson SE Roca A Alonso P Simoes EA Kartasasmita CB Olaleye DO Odaibo GN Collinson M Venter M Zhu Y Wright PF Respiratory syncytial virus infection: Denominator-based studies in Indonesia, Mozambique, Nigeria and South Africa Bull World Health Organ 2004, 82:914-922 15654405
-
(2004)
Bull World Health Organ
, vol.82
, pp. 914-922
-
-
Robertson, S.E.1
Roca, A.2
Alonso, P.3
Simoes, E.A.4
Kartasasmita, C.B.5
Olaleye, D.O.6
Odaibo, G.N.7
Collinson, M.8
Venter, M.9
Zhu, Y.10
Wright, P.F.11
-
28
-
-
0036302066
-
Molecular approaches to detecting herpes simplex virus and enteroviruses in the central nervous system
-
120559 12089241 10.1128/JCM.40.7.2317-2322.2002
-
Smalling TW Sefers SE Li H Tang YW Molecular approaches to detecting herpes simplex virus and enteroviruses in the central nervous system J Clin Microbiol 2002, 40:2317-2322 120559 12089241 10.1128/ JCM.40.7.2317-2322.2002
-
(2002)
J Clin Microbiol
, vol.40
, pp. 2317-2322
-
-
Smalling, T.W.1
Sefers, S.E.2
Li, H.3
Tang, Y.W.4
-
29
-
-
0032808039
-
A colorimetric microtiter plate PCR system detects respiratory syncytial virus in nasal aspirates and discrimiates subtypes A and B
-
10.1016/S0732-8893(99)00049-8 10459487
-
Tang YW Heimgartner PJ Tollefson SJ Berg TJ Rys PN Li H Smith TF Persing DH Wright PF A colorimetric microtiter plate PCR system detects respiratory syncytial virus in nasal aspirates and discrimiates subtypes A and B Diagn Microbiol Infect Dis 1999, 34:333-337 10.1016/ S0732-8893(99)00049-8 10459487
-
(1999)
Diagn Microbiol Infect Dis
, vol.34
, pp. 333-337
-
-
Tang, Y.W.1
Heimgartner, P.J.2
Tollefson, S.J.3
Berg, T.J.4
Rys, P.N.5
Li, H.6
Smith, T.F.7
Persing, D.H.8
Wright, P.F.9
-
30
-
-
0026761123
-
A method for the rapid sequence-independent amplification of microdissected chromosomal material
-
10.1016/0888-7543(92)90057-Y 1505965
-
Bohlander SK Espinosa I Rafael Le Beau MM Rowley JD Diaz MO A method for the rapid sequence-independent amplification of microdissected chromosomal material Genomics 1992, 13:1322-1324 10.1016/ 0888-7543(92)90057-Y 1505965
-
(1992)
Genomics
, vol.13
, pp. 1322-1324
-
-
Bohlander, S.K.1
Espinosa, I.2
Rafael3
Le Beau, M.M.4
Rowley, J.D.5
Diaz, M.O.6
-
31
-
-
1542316916
-
Tracking the Evolution of the SARS Coronavirus Using High-Throughput, High-Density Resequencing Arrays
-
353227 14993206 10.1101/gr.2141004
-
Wong CW Albert TJ Vega VB Norton JE Cutler DH Richmond TA Stanton LW Liu ET Miller LD Tracking the Evolution of the SARS Coronavirus Using High-Throughput, High-Density Resequencing Arrays Genome Res 2004, 14:398-405 353227 14993206 10.1101/gr.2141004
-
(2004)
Genome Res
, vol.14
, pp. 398-405
-
-
Wong, C.W.1
Albert, T.J.2
Vega, V.B.3
Norton, J.E.4
Cutler, D.H.5
Richmond, T.A.6
Stanton, L.W.7
Liu, E.T.8
Miller, L.D.9
-
32
-
-
33645479888
-
A critical review of PCR primer design algorithms and crosshybridization case study
-
Burpo FJ A critical review of PCR primer design algorithms and crosshybridization case study Biochemistry 2001:218
-
(2001)
Biochemistry
, pp. 218
-
-
Burpo, F.J.1
-
33
-
-
0018416989
-
A rapid method for detecting and mapping homology between heterologous DNAs. Evaluation of polyomavirus genomes
-
220264
-
Howley PM Israel MF Law M-F Martin MA A rapid method for detecting and mapping homology between heterologous DNAs. Evaluation of polyomavirus genomes J Biol Chem 1979, 254(11):4876-4883 220264
-
(1979)
J Biol Chem
, vol.254
, Issue.11
, pp. 4876-4883
-
-
Howley, P.M.1
Israel, M.F.2
Law, M.-F.3
Martin, M.A.4
|