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Volumn 3, Issue , 2008, Pages

Same-strand overlapping genes in bacteria: Compositional determinants of phase bias

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 52649156551     PISSN: None     EISSN: 17456150     Source Type: Journal    
DOI: 10.1186/1745-6150-3-36     Document Type: Review
Times cited : (24)

References (21)
  • 1
    • 12444259766 scopus 로고    scopus 로고
    • Overlapping genes in vertebrate genomes
    • 10.1016/j.compbiolchem.2004.12.006 15680581
    • Makalowska I Lin CF Makalowski W Overlapping genes in vertebrate genomes Computational biology and chemistry 2005, 29(1):1-12. 10.1016/ j.compbiolchem.2004.12.006 15680581
    • (2005) Computational Biology and Chemistry , vol.29 , Issue.1 , pp. 1-12
    • Makalowska, I.1    Lin, C.F.2    Makalowski, W.3
  • 2
    • 35048873167 scopus 로고    scopus 로고
    • Rz/Rz1 lysis gene equivalents in phages of Gram-negative hosts
    • 10.1016/j.jmb.2007.08.045 17900620
    • Summer EJ Berry J Tran TA Niu L Struck DK Young R Rz/Rz1 lysis gene equivalents in phages of Gram-negative hosts Journal of molecular biology 2007, 373(5):1098-1112. 10.1016/j.jmb.2007.08.045 17900620
    • (2007) Journal of Molecular Biology , vol.373 , Issue.5 , pp. 1098-1112
    • Summer, E.J.1    Berry, J.2    Tran, T.A.3    Niu, L.4    Struck, D.K.5    Young, R.6
  • 3
    • 37849012983 scopus 로고    scopus 로고
    • A statistical analysis of the three-fold evolution of genomic compression through frame overlaps in prokaryotes
    • 2174442 17877818 10.1186/1745-6150-2-22
    • Lillo F Krakauer DC A statistical analysis of the three-fold evolution of genomic compression through frame overlaps in prokaryotes Biology direct 2007, 2:22. 2174442 17877818 10.1186/1745-6150-2-22
    • (2007) Biology Direct , vol.2 , pp. 22
    • Lillo, F.1    Krakauer, D.C.2
  • 5
    • 0017798436 scopus 로고
    • Evolution of overlapping genes
    • 10.1038/272532a0 692657
    • Miyata T Yasunaga T Evolution of overlapping genes Nature 1978, 272(5653):532-535. 10.1038/272532a0 692657
    • (1978) Nature , vol.272 , Issue.5653 , pp. 532-535
    • Miyata, T.1    Yasunaga, T.2
  • 8
    • 34247884480 scopus 로고    scopus 로고
    • Evolution of gene overlaps: Relative reading frame bias in prokaryotic two-component system genes
    • 10.1007/s00239-006-0180-1 17479344
    • Cock PJ Whitworth DE Evolution of gene overlaps: Relative reading frame bias in prokaryotic two-component system genes Journal of molecular evolution 2007, 64(4):457-462. 10.1007/s00239-006-0180-1 17479344
    • (2007) Journal of Molecular Evolution , vol.64 , Issue.4 , pp. 457-462
    • Cock, P.J.1    Whitworth, D.E.2
  • 9
    • 0345490693 scopus 로고    scopus 로고
    • On dynamics of overlapping genes in bacterial genomes
    • 10.1016/j.gene.2003.09.021 14659892
    • Fukuda Y Nakayama Y Tomita M On dynamics of overlapping genes in bacterial genomes Gene 2003, 323:181-187. 10.1016/j.gene.2003.09.021 14659892
    • (2003) Gene , vol.323 , pp. 181-187
    • Fukuda, Y.1    Nakayama, Y.2    Tomita, M.3
  • 10
    • 0033561022 scopus 로고    scopus 로고
    • Comparative study of overlapping genes in the genomes of Mycoplasma genitalium and Mycoplasma pneumoniae
    • 148392 10101192 10.1093/nar/27.8.1847
    • Fukuda Y Washio T Tomita M Comparative study of overlapping genes in the genomes of Mycoplasma genitalium and Mycoplasma pneumoniae Nucleic Acids Res 1999, 27(8):1847-1853. 148392 10101192 10.1093/nar/27.8.1847
    • (1999) Nucleic Acids Res , vol.27 , Issue.8 , pp. 1847-1853
    • Fukuda, Y.1    Washio, T.2    Tomita, M.3
  • 11
    • 8744308029 scopus 로고    scopus 로고
    • Properties of overlapping genes are conserved across microbial genomes
    • 525685 15520290 10.1101/gr.2433104
    • Johnson ZI Chisholm SW Properties of overlapping genes are conserved across microbial genomes Genome research 2004, 14(11):2268-2272. 525685 15520290 10.1101/gr.2433104
    • (2004) Genome Research , vol.14 , Issue.11 , pp. 2268-2272
    • Johnson, Z.I.1    Chisholm, S.W.2
  • 13
    • 35748945758 scopus 로고    scopus 로고
    • A unified model explaining the offsets of overlapping and near-overlapping prokaryotic genes
    • 10.1093/molbev/msm145 17642473 2429982
    • Kingsford C Delcher AL Salzberg SL A unified model explaining the offsets of overlapping and near-overlapping prokaryotic genes Molecular biology and evolution 2007, 24(9):2091-2098. 10.1093/molbev/msm145 17642473 2429982
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.9 , pp. 2091-2098
    • Kingsford, C.1    Delcher, A.L.2    Salzberg, S.L.3
  • 14
    • 34547769304 scopus 로고    scopus 로고
    • BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes
    • 1940028 17650344 10.1186/1471-2105-8-266
    • Luo Y Fu C Zhang DY Lin K BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes BMC bioinformatics 2007, 8:266. 1940028 17650344 10.1186/1471-2105-8-266
    • (2007) BMC Bioinformatics , vol.8 , pp. 266
    • Luo, Y.1    Fu, C.2    Zhang, D.Y.3    Lin, K.4
  • 15
    • 0032860238 scopus 로고    scopus 로고
    • Asymmetric substitution patterns: A review of possible underlying mutational or selective mechanisms
    • 10.1016/S0378-1119(99)00297-8 10570985
    • Frank AC Lobry JR Asymmetric substitution patterns: A review of possible underlying mutational or selective mechanisms Gene 1999, 238(1):65-77. 10.1016/S0378-1119(99)00297-8 10570985
    • (1999) Gene , vol.238 , Issue.1 , pp. 65-77
    • Frank, A.C.1    Lobry, J.R.2
  • 16
    • 0029985398 scopus 로고    scopus 로고
    • Asymmetric substitution patterns in the two DNA strands of bacteria
    • 8676740
    • Lobry JR Asymmetric substitution patterns in the two DNA strands of bacteria Molecular biology and evolution 1996, 13(5):660-665. 8676740
    • (1996) Molecular Biology and Evolution , vol.13 , Issue.5 , pp. 660-665
    • Lobry, J.R.1
  • 17
    • 0029938912 scopus 로고    scopus 로고
    • Origin of replication of Mycoplasma genitalium
    • 8614839
    • Lobry JR Origin of replication of Mycoplasma genitalium Science (New York, NY) 1996, 272(5262):745-746. 8614839
    • (1996) Science (New York, NY) , vol.272 , Issue.5262 , pp. 745-746
    • Lobry, J.R.1
  • 18
    • 33847032203 scopus 로고    scopus 로고
    • The genetic code is nearly optimal for allowing additional information within protein-coding sequences
    • 1832087 17293451 10.1101/gr.5987307
    • Itzkovitz S Alon U The genetic code is nearly optimal for allowing additional information within protein-coding sequences Genome research 2007, 17(4):405-412. 1832087 17293451 10.1101/gr.5987307
    • (2007) Genome Research , vol.17 , Issue.4 , pp. 405-412
    • Itzkovitz, S.1    Alon, U.2
  • 19
    • 8144223724 scopus 로고    scopus 로고
    • The ambush hypothesis: Hidden stop codons prevent off-frame gene reading
    • 10.1089/dna.2004.23.701 15585128
    • Seligmann H Pollock DD The ambush hypothesis: Hidden stop codons prevent off-frame gene reading DNA and cell biology 2004, 23(10):701-705. 10.1089/dna.2004.23.701 15585128
    • (2004) DNA and Cell Biology , vol.23 , Issue.10 , pp. 701-705
    • Seligmann, H.1    Pollock, D.D.2
  • 20
    • 34948894065 scopus 로고    scopus 로고
    • The evolution of genome compression and genomic novelty in RNA viruses
    • 1987338 17785537 10.1101/gr.6305707
    • Belshaw R Pybus OG Rambaut A The evolution of genome compression and genomic novelty in RNA viruses Genome research 2007, 17(10):1496-1504. 1987338 17785537 10.1101/gr.6305707
    • (2007) Genome Research , vol.17 , Issue.10 , pp. 1496-1504
    • Belshaw, R.1    Pybus, O.G.2    Rambaut, A.3
  • 21
    • 37249030834 scopus 로고    scopus 로고
    • Is evolvability evolvable?
    • 10.1038/nrg2278 18059367
    • Pigliucci M Is evolvability evolvable? Nat Rev Genet 2008, 9(1):75-82. 10.1038/nrg2278 18059367
    • (2008) Nat Rev Genet , vol.9 , Issue.1 , pp. 75-82
    • Pigliucci, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.