Autologistic model with an application to the citrus "sudden death" disease

Scientia Agricola

Volumn 65, Issue 5, 2008, Pages 541-547

  Krainski, Elias Teixeira ^a   Ribeiro Jr , Paulo Justiniano ^a   Bassanezi, Renato Beozzo ^b   Franciscon, Luziane ^a  

^a FEDERAL UNIVERSITY OF PARANÁ   (Brazil)

^b Fundo de Defesa da Citricultura   (Brazil)

Author keywords

Binary response variable; Bootstrap; Plant disease; Pseudolikelihood; Spatial statistics

Indexed keywords

CITRUS;

EID: 52649134612     PISSN: 01039016     EISSN: 1678992X     Source Type: Journal    
DOI: 10.1590/s0103-90162008000500014     Document Type: Article

References (21)

1. BASSANEZI, R.B.; BERGAMIN FILHO, A.; AMORIM, L.; GIMENES-FERNANDES, N.; GOTTWALD, T.R.; BOVÉ, J.M. Spatial and temporal analyses of citrus sudden death as a tool to generate hypotheses concerning its etiology. Phytopathology, v.9, p.502-512, 2003.
2. BASSANEZI, R.B.; BERGAMIN FILHO, A.; AMORIM, L.; GOTTWALD, T.R. Spatial and temporal analyses of citrus sudden death in Brazil. In: CONFERENCE OF THE INTERNATIONAL ORGANIZATION OF CITRUS VIROLOGISTS, Riverside, 2005. Proceedings. Riverside: International Organization of Citrus Virologists, 2005. p.217-229.
3. BESAG J. Nearest-neighbour systems and the auto-logistic model for binary data. Journal of the Royal Statistics Society, Series B, v.34, p.75-83, 1972.
4. BESAG, J. 'Statistical analysis of non-lattice data'. The Statistician, v.24, p.179-195, 1975.
5. COLETTA FILHO, H.D.; TARGON, M.L.P.N.; TAKITA, M.A.; MÜLLER, G.W.; SANTOS, F.A.; DORTA, S.O.; DE SOUZA, A.A.; ASTÚA-MONGE, G.; FREITAS-ASTÚA, J.; MACHADO, M.A. Citrus tristeza virus variant associated with citrus sudden death and its specific detection by RT-PCR. In: CONFERENCE OF THE INTERNATIONAL ORGANIZATION OF CITRUS VIROLOGISTS, Riverside, 2005. Proceedings. Riverside: International Organization of Citrus Virologists, 2005. p.499.
6. CRESSIE, N. Statistics for spatial data. New York: John Wiley, 1993. 928p.
7. GIMENES-FERNANDES, N.; BASSANEZI, R.B. Doença de causa desconhecida afeta pomares cítricos no norte de São Paulo e sul do Triângulo Mineiro. Summa Phytopathologica, v.27, p.93, 2001.
8. GOTTWALD, T.R.; REYNOLDS, K.M.; CAMPBELL, C.L.; TIMMER, L.W. Spatial and spatiotemporal autocorrelation analysis of citrus canker epidemics in citrus nurseries and groves in Argentina. Phytopathology, v.82, p.843-851, 1992.
9. GUMPERTZ, M.L.; GRAHAM, J.M.; RISTAINO, J.B. Autologistic model of spatial pattern of phytophthora epidemic in bell pepper: effects of soil variables on disease presence. Journal of Agricultural, Biological and Environmental Statistics, v.2, p.131-156, 1997.
10. GUMPERTZ, M.L.; WU, C.-T.; PYE, J.M. Logistic regression for southern pine beetle outbreaks with spatial and temporal autocorrelation. Forest Science, v.46, p.95-107, 1999.
11. KRAINSKI, E.T.; RIBEIRO JÚNIOR, P.J. Rcitrus: functions for the analysis of citrus disease data. R package version 0.3-0. Curitiba:UFPR/LEG, 2007.
12. LIMA, R.R.; DEMÉTRIO, C.G.B.; RIBEIRO JÚNIOR, P.J.; RIDOUT, M. Uma comparação de técnicas baseadas em quadrats para caracterização de padrões espaciais em doenças de plantas. Revista de Matemática e Estatística, v.24, p.7-26, 2006.
13. MACCHERONI, W.; ALEGRIA, M.C.; GREGGIO, C.C.; PIAZZA, J.P.; KAMLA, R.F.; ZACHARIAS, P.R.A.; BAR-JOSEPH, M.; KITAJIMA, E.W.; ASSUMPÇÃO, L.C.; CAMAROTTE, G.; CARDOZO, J.; CASAGRANDE, L.C.; FERRARI, F.; FRANCO, S.F.; GIACHETTO, P.F.; GIRASOL; JORDÃO JÚNIOR, H.; SILVA, V.H.A.; SOUZA, L.C.A.; AGUILAR-VILDOSO, C.I.; ZANCA, A.S.; ARRUDA, P.; KITAJIMA, J.P.; REINACH, F.C.; FERRO, J.A.; SILVA, A.C.R. Identification and genomic characterization of a new virus (Tymoviridae Family) associated with citrus sudden death disease. Journal of Virology, v.79, p.3028-3037, 2005.
14. MADDEN, L.V.; HUGHES, G. Plant disease incidence: distributions, heterogeneity, and temporal analysis. Annual Review of Phytopathology, v.33, p.529-564, 1995.
15. MADDEN, L.V.; LOUIE, R.; ABT., J.J.; KNOKE, J.K. Evaluation of tests for randomness of infected plants. Phytopathology, v.72. p.195-198, 1982.
16. R DEVELOPMENT CORE TEAM. R: a language and environment for statistical computing. Vienna, R Foundation for Statistical Computing, 2007.
17. ROMÁN, M.P.; CAMBRA, M.; JUÁREZ, J.; MORENO, P.; DURAN-VILA, N.; TANAKA, F.A.O.; ALVES, E.; KITAJIMA, E.W.; YAMAMOTO, P.T.; BASSANEZI, R.B.; TEIXEIRA, D.C.; JESUS JÚNIOR, W.C.; AYRES, A.J.; GIMENES-FERNANDES, N.; RABENSTEIN, GIROTTO, L.F.; BOVÉ, J.M. Sudden death of citrus in Brazil: A graft-transmissible bud union disease. Plant Disease, v.88, p.453-467, 2004.
18. SANTOS, C.B.; BARBIN, D.; CALIRI, A. Percolação e o fenômeno epidêmico: uma abordagem temporal e espacial da difusão de doenças. Scientia Agricola, v.55, p.418-427, 1998.
19. SPÓSITO, M.B.; AMORIM, L.; RIBEIRO JÚNIOR, P.J.; BASSANEZI, R.B.; KRAISNKI, E.T. Spatial patterns of trees affected by black spots in citrus groves in Brazil. Plant Disease, v.91, p.36-40, 2007.
20. XU, X.M.; RIDOUT, M.S. Effects of quadrat size and shape, initial epidemic conditions, and spore dispersal gradient on spatial statistics of plant disease epidemics. Phytopathology, v.90, p.738-750, 2000.
21. ZHU, J.; HUANG, H.C.; WU, J. Modeling spatial-temporal binary data using Markov random fields. Journal of Agricultural, Biological and Environmental Statistics, v.10, p.212-225, 2005.