Integron variability in Xanthomonas arboricola pv. juglandis and Xanthomonas arboricola pv. pruni strains

FEMS Microbiology Letters

Volumn 288, Issue 1, 2008, Pages 19-24

  Barionovi, Daniela ^a   Scortichini, Marco ^a  

^a CRA Istituto Sperimentale Per la Frutticoltura   (Italy)

Author keywords

BOX PCR; Gene cassette array; Integron; Pathovar; Xanthomonas

Indexed keywords

INTEGRASE;

ARTICLE; AUSTRALIA; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATION; GENE CASSETTE; GENE SEQUENCE; GENETIC ALGORITHM; GENETIC VARIABILITY; GEOGRAPHICAL VARIATION (SPECIES); HOST; ILVD GENE; INTEGRON; INTI GENE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOTYPE; PLANT; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; STRAIN IDENTIFICATION; XANTHOMONAS; XANTHOMONAS ARBARICOLA JUGLANDIS; XANTHOMONAS ARBARICOLA PRUNI; XANTHOMONAS HORTORUM PELARGONII;

GENETIC VARIATION; INTEGRONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANTS; XANTHOMONAS;

XANTHOMONAS; XANTHOMONAS ARBORICOLA; XANTHOMONAS ARBORICOLA PV. JUGLANDIS; XANTHOMONAS ARBORICOLA PV. PRUNI; XANTHOMONAS HORTORUM;

EID: 52649113320     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2008.01315.x     Document Type: Article

References (13)

1. Barionovi D Scortichini M (2006) Assessment of integron gene cassette arrays in strains of Xanthomonas fragariae and X. arboricola pvs. fragariae and pruni. J Plant Pathol 88 : 279 284.
2. Bennett PM (1999) Integrons and gene cassettes: a genetic construction kit for bacteria. J Antimicrob Chemoth 43 : 1 4.
3. Boucher Y, Labbate M, Koenig JE Stokes HW (2007) Integrons: mobilizable platforms that promote genetic diversity in bacteria. Trends Microbiol 15 : 301 309.
4. Gillings MR, Holley MP, Stokes HW Holmes AJ (2005) Integrons in Xanthomonas: a source of species genome diversity. Proc Natl Acad Sci USA 102 : 4419 4424.
5. Higgins D, Thompson J, Gibson T, Thompson JD, Higgins DG Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weigh matrix choice. Nucleic Acid Res 22 : 4673 4680.
6. Holmes AJ, Holley MP, Mahon A, Nield B, Gillings M Stokes HW (2003) Recombination activity of a distinctive integron-gene cassette system associated with Pseudomonas stutzeri populations in soil. J Bacteriol 185 : 918 928.
7. Kumar S, Tamura K Nei M (2004) MEGA 3: integrated software for molecular evolutionary genetic analysis and sequence alignment. Brief Bioinform 5 : 150 163.
8. Loreti S, Gallelli A, Belisario A, Wajnberg E Corazza L (2001) Investigation of genomic variability Xanthomonas arboricola pv. juglandis by AFLP analysis. Eur J Plant Pathol 107 : 583 591.
9. Louws FJ, Fulbright DW, Stephens CT de Bruijn FJ (1994) Specific genomic fingerprinting of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequence and PCR. Appl Environ Microb 60 : 2286 2295.
10. Rowe-Magnus DA, Guerot A-M, Ploncard P, Dychinco B, Davies J Mazel D (2001) The evolutionary history of chromosomal super-integrons provides an ancestry for multiresistant integrons. Proc Natl Acad Sci USA 98 : 652 657.
11. Sambrook J, Fritsch EF Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
12. Scortichini M, Marchesi U Di Prospero P (2001) Genetic diversity of Xanthomonas arboricola pv. juglandis (synonyms: X. campestris pv. juglandis; X. juglandis pv. juglandis) strains from different geographical areas shown by repetitive polymerase chain reaction genomic fingerprinting. J Phytopathol 149 : 325 332.
13. Van den Mooter M, Steenackers M, Maertens C, Gossele F, de Vos P, Swings J, Kersters K de Ley J (1987) Differentiation between Xanthomonas campestris pv. graminis (ISPP list 1980), pv. phleipratensis (ISPP list 1980) emend. pv. poae Egli and Schmidt 1982 and pv. arrenatheri Egli and Schmidt by numerical analysis of phenotypic features and protein gel electrophoresis. J Phytopathol 118 : 135 156.