메뉴 건너뛰기




Volumn 5, Issue , 2008, Pages

A SYBR Green RT-PCR assay in single tube to detect human and bovine noroviruses and control for inhibition

Author keywords

[No Author keywords available]

Indexed keywords

BOVINE SERUM ALBUMIN; RNA; FLUORESCENT DYE;

EID: 52649105341     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-5-94     Document Type: Article
Times cited : (27)

References (41)
  • 1
    • 0001248233 scopus 로고    scopus 로고
    • Human caliciviruses
    • Philadelphia: Lippincott Williams and Wilkins Knipe DM, Howley PM 4
    • Human caliciviruses. KY Green RM Chanock AZ Kapikian, Fields Virology Philadelphia: Lippincott Williams and Wilkins, Knipe DM, Howley PM, 4 2001 1 841 874
    • (2001) Fields Virology , vol.1 , pp. 841-874
    • Green, K.Y.1    Chanock, R.M.2    Kapikian, A.Z.3
  • 2
    • 0034039587 scopus 로고    scopus 로고
    • The discovery of the 27-nm Norwalk virus: An historic perspective
    • 10.1086/315584. 10804141
    • The discovery of the 27-nm Norwalk virus: an historic perspective. AZ Kapikian, J Infect Dis 2000 181 Suppl 2 S295 S302 10.1086/315584 10804141
    • (2000) J Infect Dis , vol.181 , Issue.SUPPL. 2
    • Kapikian, A.Z.1
  • 4
    • 0030785492 scopus 로고    scopus 로고
    • The incidence and genetic variability of small round-structured viruses in outbreaks of gastroenteritis in the Netherlands
    • 9359742
    • The incidence and genetic variability of small round-structured viruses in outbreaks of gastroenteritis in The Netherlands. J Vinje SA Altena MP Koopmans, J Infect Dis 1997 176 1374 1378 9359742
    • (1997) J Infect Dis , vol.176 , pp. 1374-1378
    • Vinje, J.1    Altena, S.A.2    Koopmans, M.P.3
  • 5
    • 0029763308 scopus 로고    scopus 로고
    • Molecular detection and epidemiology of small round-structured viruses in outbreaks of gastroenteritis in the Netherlands
    • 8769621
    • Molecular detection and epidemiology of small round-structured viruses in outbreaks of gastroenteritis in the Netherlands. J Vinje MP Koopmans, J Infect Dis 1996 174 610 615 8769621
    • (1996) J Infect Dis , vol.174 , pp. 610-615
    • Vinje, J.1    Koopmans, M.P.2
  • 6
    • 0031303752 scopus 로고    scopus 로고
    • The role of human caliciviruses in epidemic gastroenteritis
    • 9413535
    • The role of human caliciviruses in epidemic gastroenteritis. KY Green, Arch Virol Suppl 1997 13 153 165 9413535
    • (1997) Arch Virol Suppl , vol.13 , pp. 153-165
    • Green, K.Y.1
  • 8
    • 46849113631 scopus 로고    scopus 로고
    • Animal noroviruses
    • doi: 10.1016/j.tvjl.2007.11.012. 18294883
    • Animal noroviruses. A Scipioni A Mauroy J Vinje E Thiry, Vet J 2008 doi: 10.1016/j.tvjl.2007.11.012 18294883
    • (2008) Vet J
    • Scipioni, A.1    Mauroy, A.2    Vinje, J.3    Thiry, E.4
  • 9
    • 0031870361 scopus 로고    scopus 로고
    • Detection of Norwalk-like virus genes in the caecum contents of pigs
    • 10.1007/s007050050369. 9687878
    • Detection of Norwalk-like virus genes in the caecum contents of pigs. M Sugieda H Nagaoka Y Kakishima T Ohshita S Nakamura S Nakajima, Arch Virol 1998 143 1215 1221 10.1007/s007050050369 9687878
    • (1998) Arch Virol , vol.143 , pp. 1215-1221
    • Sugieda, M.1    Nagaoka, H.2    Kakishima, Y.3    Ohshita, T.4    Nakamura, S.5    Nakajima, S.6
  • 10
    • 0018038918 scopus 로고
    • Isolation of small viruses resembling astroviruses and caliciviruses from acute enteritis of calves
    • 102800
    • Isolation of small viruses resembling astroviruses and caliciviruses from acute enteritis of calves. GN Woode JC Bridger, J Med Microbiol 1978 11 441 452 102800
    • (1978) J Med Microbiol , vol.11 , pp. 441-452
    • Woode, G.N.1    Bridger, J.C.2
  • 13
    • 0027295302 scopus 로고
    • Sequence and genomic organization of Norwalk virus
    • 10.1006/viro.1993.1345
    • Sequence and genomic organization of Norwalk virus. X Jiang M Wang K Wang MK Estes, Virol 1993 195 51 61 10.1006/viro.1993.1345
    • (1993) Virol , vol.195 , pp. 51-61
    • Jiang, X.1    Wang, M.2    Wang, K.3    Estes, M.K.4
  • 14
    • 0027467957 scopus 로고
    • Sequence and genome organization of a human small round-structured (Norwalk-like) virus
    • 10.1126/science.8380940. 8380940
    • Sequence and genome organization of a human small round-structured (Norwalk-like) virus. PR Lambden EO Caul CR Ashley IN Clarke, Science 1993 259 516 519 10.1126/science.8380940 8380940
    • (1993) Science , vol.259 , pp. 516-519
    • Lambden, P.R.1    Caul, E.O.2    Ashley, C.R.3    Clarke, I.N.4
  • 15
    • 0035133921 scopus 로고    scopus 로고
    • Diagnosis of noncultivatable gastroenteritis viruses, the human caliciviruses
    • 11148001. 10.1128/CMR.14.1.15-37.2001
    • Diagnosis of noncultivatable gastroenteritis viruses, the human caliciviruses. RL Atmar MK Estes, Clin Microbiol Rev 2001 14 15 37 11148001 10.1128/CMR.14.1.15-37.2001
    • (2001) Clin Microbiol Rev , vol.14 , pp. 15-37
    • Atmar, R.L.1    Estes, M.K.2
  • 16
    • 0036701645 scopus 로고    scopus 로고
    • Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction
    • 10.1016/S1386-6532(02)00126-9. 12367660
    • Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction. H Vennema E de Bruin M Koopmans, J Clin Virol 2002 25 233 235 10.1016/S1386-6532(02)00126-9 12367660
    • (2002) J Clin Virol , vol.25 , pp. 233-235
    • Vennema, H.1    De Bruin, E.2    Koopmans, M.3
  • 17
    • 0037388633 scopus 로고    scopus 로고
    • Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR
    • 12682144. 10.1128/JCM.41.4.1548-1557.2003
    • Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR. T Kageyama S Kojima M Shinohara K Uchida S Fukushi FB Hoshino N Takeda K Katayama, J Clin Microbiol 2003 41 1548 1557 12682144 10.1128/JCM.41.4.1548-1557.2003
    • (2003) J Clin Microbiol , vol.41 , pp. 1548-1557
    • Kageyama, T.1    Kojima, S.2    Shinohara, M.3    Uchida, K.4    Fukushi, S.5    Hoshino, F.B.6    Takeda, N.7    Katayama, K.8
  • 18
    • 35248899894 scopus 로고    scopus 로고
    • Development of a real-time RT-PCR and Reverse Line probe Hybridisation assay for the routine detection and genotyping of Noroviruses in Ireland
    • 17822552. 10.1186/1743-422X-4-86
    • Development of a real-time RT-PCR and Reverse Line probe Hybridisation assay for the routine detection and genotyping of Noroviruses in Ireland. JF Menton K Kearney JG Morgan, Virol J 2007 4 86 17822552 10.1186/1743-422X-4-86
    • (2007) Virol J , vol.4 , pp. 86
    • Menton, J.F.1    Kearney, K.2    Morgan, J.G.3
  • 19
    • 38149035732 scopus 로고    scopus 로고
    • Novel light-upon-extension real-time PCR assays for detection and quantification of genogroup I and II noroviruses in clinical specimens
    • 17959761. 10.1128/JCM.01316-07
    • Novel light-upon-extension real-time PCR assays for detection and quantification of genogroup I and II noroviruses in clinical specimens. J Nordgren F Bucardo O Dienus L Svensson PE Lindgren, J Clin Microbiol 2008 46 164 170 17959761 10.1128/JCM.01316-07
    • (2008) J Clin Microbiol , vol.46 , pp. 164-170
    • Nordgren, J.1    Bucardo, F.2    Dienus, O.3    Svensson, L.4    Lindgren, P.E.5
  • 20
    • 34548509444 scopus 로고    scopus 로고
    • Sensitive Multiplex Real-Time Reverse Transcription-PCR Assay for the Detection of Human and Animal Noroviruses in Clinical and Environmental Samples
    • 17616614. 10.1128/AEM.00572-07
    • Sensitive Multiplex Real-Time Reverse Transcription-PCR Assay for the Detection of Human and Animal Noroviruses in Clinical and Environmental Samples. S Wolf WM Williamson J Hewitt M Rivera-Aban S Lin A Ball P Scholes GE Greening, Appl Environ Microbiol 2007 73 5464 5470 17616614 10.1128/AEM.00572-07
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5464-5470
    • Wolf, S.1    Williamson, W.M.2    Hewitt, J.3    Rivera-Aban, M.4    Lin, S.5    Ball, A.6    Scholes, P.7    Greening, G.E.8
  • 21
    • 46849111611 scopus 로고    scopus 로고
    • Detection and quantification of human and bovine noroviruses by a TaqMan RT-PCR assay with a control for inhibition
    • doi: 10.1016/j.mcp.2008.02.003. 18424068
    • Detection and quantification of human and bovine noroviruses by a TaqMan RT-PCR assay with a control for inhibition. A Scipioni I Bourgot A Mauroy D Ziant C Saegerman G Daube E Thiry, Mol Cell Probes 2008 doi: 10.1016/j.mcp.2008.02.003 18424068
    • (2008) Mol Cell Probes
    • Scipioni, A.1    Bourgot, I.2    Mauroy, A.3    Ziant, D.4    Saegerman, C.5    Daube, G.6    Thiry, E.7
  • 23
    • 0026483026 scopus 로고
    • Detection of Norwalk virus in stool specimens by reverse transcriptase-polymerase chain reaction and nonradioactive oligoprobes
    • 1280649
    • Detection of Norwalk virus in stool specimens by reverse transcriptase-polymerase chain reaction and nonradioactive oligoprobes. R De Leon SM Matsui RS Baric JE Herrmann NR Blacklow HB Greenberg MD Sobsey, J Clin Microbiol 1992 30 3151 3157 1280649
    • (1992) J Clin Microbiol , vol.30 , pp. 3151-3157
    • De Leon, R.1    Matsui, S.M.2    Baric, R.S.3    Herrmann, J.E.4    Blacklow, N.R.5    Greenberg, H.B.6    Sobsey, M.D.7
  • 24
    • 0030448868 scopus 로고    scopus 로고
    • Evaluation of a degenerate primer for the PCR detection of human caliciviruses
    • 10.1007/BF01718228. 8973536
    • Evaluation of a degenerate primer for the PCR detection of human caliciviruses. F Le Guyader MK Estes ME Hardy FH Neill J Green DW Brown RL Atmar, Arch Virol 1996 141 2225 2235 10.1007/BF01718228 8973536
    • (1996) Arch Virol , vol.141 , pp. 2225-2235
    • Le Guyader, F.1    Estes, M.K.2    Hardy, M.E.3    Neill, F.H.4    Green, J.5    Brown, D.W.6    Atmar, R.L.7
  • 26
    • 0030985879 scopus 로고    scopus 로고
    • Removal of PCR inhibitors from human faecal samples through the use of an aqueous two-phase system for sample preparation prior to PCR
    • 10.1016/S0167-7012(97)00979-2
    • Removal of PCR inhibitors from human faecal samples through the use of an aqueous two-phase system for sample preparation prior to PCR. P-G Lantz M Matsson T Wadstrom P Radstrom, J Microbiol Methods 1997 28 159 167 10.1016/S0167-7012(97)00979-2
    • (1997) J Microbiol Methods , vol.28 , pp. 159-167
    • Lantz, P.-G.1    Matsson, M.2    Wadstrom, T.3    Radstrom, P.4
  • 28
    • 0038628891 scopus 로고    scopus 로고
    • Applications of competitor RNA in diagnostic reverse transcription-PCR
    • 12734248. 10.1128/JCM.41.5.2055-2061.2003
    • Applications of competitor RNA in diagnostic reverse transcription-PCR. SB Kleiboeker, J Clin Microbiol 2003 41 2055 2061 12734248 10.1128/JCM.41.5. 2055-2061.2003
    • (2003) J Clin Microbiol , vol.41 , pp. 2055-2061
    • Kleiboeker, S.B.1
  • 29
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • 9327537
    • Inhibition and facilitation of nucleic acid amplification. IG Wilson, Appl Environ Microbiol 1997 63 3741 3751 9327537
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3741-3751
    • Wilson, I.G.1
  • 31
    • 0036883629 scopus 로고    scopus 로고
    • Melting curve analysis of feline calicivirus isolates detected by real-time reverse transcription PCR
    • 10.1016/S0166-0934(02)00167-2. 12393155
    • Melting curve analysis of feline calicivirus isolates detected by real-time reverse transcription PCR. C Helps P Lait S Tasker D Harbour, J Virol Methods 2002 106 241 244 10.1016/S0166-0934(02)00167-2 12393155
    • (2002) J Virol Methods , vol.106 , pp. 241-244
    • Helps, C.1    Lait, P.2    Tasker, S.3    Harbour, D.4
  • 32
    • 10444290580 scopus 로고    scopus 로고
    • Genogroup I and II noroviruses detected in stool samples by real-time reverse transcription-PCR using highly degenerate universal primers
    • 15574915. 10.1128/AEM.70.12.7179-7184.2004
    • Genogroup I and II noroviruses detected in stool samples by real-time reverse transcription-PCR using highly degenerate universal primers. GP Richards MA Watson RL Fankhauser SS Monroe, Appl Environ Microbiol 2004 70 7179 7184 15574915 10.1128/AEM.70.12.7179-7184.2004
    • (2004) Appl Environ Microbiol , vol.70 , pp. 7179-7184
    • Richards, G.P.1    Watson, M.A.2    Fankhauser, R.L.3    Monroe, S.S.4
  • 33
    • 0036089868 scopus 로고    scopus 로고
    • Use of internal standard RNA molecules for the RT-PCR amplification of the faeces-borne RNA viruses
    • 10.1016/S0166-0934(02)00016-2. 12088820
    • Use of internal standard RNA molecules for the RT-PCR amplification of the faeces-borne RNA viruses. K Kim J Park Y Chung D Cheon IB Lee S Lee J Yoon H Cho C Song KH Lee, J Virol Methods 2002 104 107 115 10.1016/S0166-0934(02) 00016-2 12088820
    • (2002) J Virol Methods , vol.104 , pp. 107-115
    • Kim, K.1    Park, J.2    Chung, Y.3    Cheon, D.4    Lee, I.B.5    Lee, S.6    Yoon, J.7    Cho, H.8    Song, C.9    Lee, K.H.10
  • 34
    • 0031036029 scopus 로고    scopus 로고
    • Use of heat release and an internal RNA standard control in reverse transcription-PCR detection of Norwalk virus from stool samples
    • 9003630
    • Use of heat release and an internal RNA standard control in reverse transcription-PCR detection of Norwalk virus from stool samples. KJ Schwab MK Estes FH Neill RL Atmar, J Clin Microbiol 1997 35 511 514 9003630
    • (1997) J Clin Microbiol , vol.35 , pp. 511-514
    • Schwab, K.J.1    Estes, M.K.2    Neill, F.H.3    Atmar, R.L.4
  • 35
  • 36
    • 0030048084 scopus 로고    scopus 로고
    • Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein
    • 8975603
    • Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein. CA Kreader, Appl Environ Microbiol 1996 62 1102 1106 8975603
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1102-1106
    • Kreader, C.A.1
  • 37
    • 33750315354 scopus 로고    scopus 로고
    • Pathogenesis of a genogroup II human norovirus in gnotobiotic pigs
    • 17041218. 10.1128/JVI.00809-06
    • Pathogenesis of a genogroup II human norovirus in gnotobiotic pigs. S Cheetham M Souza T Meulia S Grimes MG Han LJ Saif, J Virol 2006 80 10372 10381 17041218 10.1128/JVI.00809-06
    • (2006) J Virol , vol.80 , pp. 10372-10381
    • Cheetham, S.1    Souza, M.2    Meulia, T.3    Grimes, S.4    Han, M.G.5    Saif, L.J.6
  • 38
    • 33644937076 scopus 로고    scopus 로고
    • Human and animal enteric caliciviruses in oysters from different coastal regions of the United States
    • 16517625. 10.1128/AEM.72.3.1800-1809.2006
    • Human and animal enteric caliciviruses in oysters from different coastal regions of the United States. V Costantini F Loisy L Joens FS Le Guyader LJ Saif, Appl Environ Microbiol 2006 72 1800 1809 16517625 10.1128/AEM.72.3.1800- 1809.2006
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1800-1809
    • Costantini, V.1    Loisy, F.2    Joens, L.3    Le Guyader, F.S.4    Saif, L.J.5
  • 40
    • 33846285001 scopus 로고    scopus 로고
    • Interférence statistique à une et à deux dimensions
    • Paris, Bruxelles: De Boeck & Larcier
    • Interférence statistique à une et à deux dimensions. P Dagnelie, Statistique théorique et appliquée Paris, Bruxelles: De Boeck & Larcier 1998 2 659
    • (1998) Statistique Théorique et Appliquée , vol.2 , pp. 659
    • Dagnelie, P.1
  • 41
    • 52649128134 scopus 로고    scopus 로고
    • Stata Statistical Software
    • College Station, TX: Stata Corporation
    • Stata Statistical Software. StataCorp, Release 8.0 edition College Station, TX: Stata Corporation 2003
    • (2003) Release 8.0 Edition
    • Statacorp1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.