Robiginitalea myxolifaciens sp. nov., a novel myxol-producing bacterium isolated from marine sediment, and emended description of the genus Robiginitalea

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 7, 2008, Pages 1660-1664

  Manh, Hao Do ^a,b   Matsuo, Yoshihide ^a   Katsuta, Atsuko ^a   Matsuda, Satoru ^a   Shizuri, Yoshikazu ^a   Kasai, Hiroaki ^a  

^a MARINE BIOTECHNOLOGY INSTITUTE   (Japan)

^b GRADUATE UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Viet Nam)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; CAROTENOID; CYCLOHEXIMIDE; ERYTHROMYCIN; FARNOQUINONE; GENTAMICIN; KANAMYCIN; MYXOL; NALIDIXIC ACID; PENICILLIN G; RIFAMPICIN; RNA 16S; TETRACYCLINE; UNCLASSIFIED DRUG; FATTY ACID;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BACTEROIDETES; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; FLAVOBACTERIACEAE; GENE SEQUENCE; GENOTYPE; JAPAN; MARINE BACTERIUM; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; ROBIGINITALEA BIOFORMATA; ROBIGINITALEA MYXOLIFACIENS; SEDIMENT; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; CHEMISTRY; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); FLAVOBACTERIACEAE; NEGIBACTERIA; ROBIGINITALEA; ROBIGINITALEA BIFORMATA;

CAROTENOIDS; FATTY ACIDS; FLAVOBACTERIACEAE; GEOLOGIC SEDIMENTS; JAPAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY;

EID: 52449126587     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65598-0     Document Type: Article

References (19)

1. Bernardet, J.-F. & Nakagawa, Y. (2006). An introduction to the family Flavobacteriaceae. In The Prokaryotes, a Handbook on the Biology of Bacteria, 3rd edn, vol. 7, pp. 455-480. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer.
2. Bernardet, J.-F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
3. Bowman, J. P. (2006). The marine clade of the family Flavobacteriaceae: the genera Aequorivita, Arenibacter, Cellulophaga, Croceibacter, Formosa, Gelidibacter, Gillisia, Maribacter, Mesonia, Muricauda, Polaribacter, Psychroflexus, Psychroserpens, Robiginitalea, Salegentibacter, Tenacibaculum, Ulvibacter, Vitellibacter, and Zobellia. In The Prokaryotes, a Handbook on the Biology of Bacteria, 3rd edn, vol. 7, pp. 677-694. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer.
4. Cho, J.-C. & Giovannoni, S. J. (2004). Robiginitalea biformata gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae with a higher G+C content. Int J Syst Evol Microbiol 54, 1101-1106.
5. Cole, J. R., Chai, B., Farris, R. J., Wang, Q., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Bandela, A. M., Cardenas, E., Garrity, G. M., Tiedje, J. M. & other authors (2007). The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res 35 (Database issue), D169-D172.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
8. Garrity, G. M. & Holt, J. G. (2001). The roadmap to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119-166. Edited by D. R. Boone, R.W. Castenholz & G. M. Garrity. New York: Springer.
9. Guindon, S., Lethiec, F., Duroux, P. & Gascuel, O. (2005). PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33 (Web Server issue), W557-W559.
10. Ivanova, E. P., Nedashkovskaya, O. I., Chun, J., Lysenko, A. M., Frolova, G. M., Svetashev, V. I., Vysotskii, M. V., Mikhailov, V. V., Huq, A. & Colwell, R. R. (2001). Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of a new species, Arenibacter latericius sp. nov. Int J Syst Evol Microbiol 51, 1987-1995.
11. Katsuta, A., Adachi, K., Matsuda, S., Shizuri, Y. & Kasai, H. (2005). Ferrimonas marina sp. nov. Int J Syst Evol Microbiol 55, 1851-1855.
12. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
13. Llobet-Brossa, E., Rossello-Mora, R. & Amann, R. (1998). Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization. Appl Environ Microbiol 64, 2691-2696.
14. Mesbah, M. & Whitman, W. B. (1989). Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr 479, 297-306.
15. Murray, R. G. E., Doetsch, R. N. & Robinow, F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
16. O'Brien, M. & Colwell, R. R. (1987). A rapid test for chitinase activity that uses 4-methylumbelliferyl-N-acetyl-β-D-glucosaminide. Appl Environ Microbiol 53, 1718-1720.
17. Shindo, K., Kikuta, K., Suzuki, A., Katsuta, A., Kasai, H., Yasumoto-Hirose, M., Matsuo, Y., Misawa, N. & Takaichi, S. (2007). Rare carotenoids, (3R)-saproxanthin and (3R,2′S)-myxol, isolated from novel marine bacteria (Flavobacteriaceae) and their antioxidative activities. Appl Microbiol Biotechnol 74, 1350-1357.
18. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
19. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.