Detection and identification of baculovirus pesticides by multitemperature single-strand conformational polymorphism

Journal of Environmental Science and Health - Part B Pesticides, Food Contaminants, and Agricultural Wastes

Volumn 43, Issue 7, 2008, Pages 539-545

  Szewczyk, Boguslaw ^a   Barski, Piotr ^b   Sihler, William ^c   Rabalski, Lukasz ^a   Skrzecz, Iwona ^d   Hoyos Carvajal, Liliana ^e   De Souza, Marlinda Lobo ^c  

^a UNIVERSITY OF GDA SK   (Poland)

^b A and A Biotechnology   (Poland)

^c EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

^d FOREST RESEARCH INSTITUTE   (Poland)

^e UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

Author keywords

Baculovirus; Biopesticide; Nucleopolyhedrovirus; Sequence amplification; Single stranded conformational polymorphism

Indexed keywords

ELECTROPHORESIS; FORESTRY; GENES; VIRUSES;

ANTICARSIA GEMMATALIS; BACULOVIRUS; BIOPESTICIDES; CONFORMATIONAL POLYMORPHISMS; DETECTION AND IDENTIFICATIONS; NUCLEOPOLYHEDROVIRUS; SINGLE STRAND CONFORMATIONAL POLYMORPHISM; SPODOPTERA FRUGIPERDA;

POLYMERASE CHAIN REACTION;

DETECTION METHOD; IDENTIFICATION METHOD; PESTICIDE; POLYMERASE CHAIN REACTION; POLYMORPHISM; VIRUS;

ANTICARSIA GEMMATALIS; HEXAPODA; LEPIDOPTERA; LYMANTRIA; LYMANTRIA DISPAR; LYMANTRIA MONACHA; NUCLEOPOLYHEDROVIRUS; SPODOPTERA FRUGIPERDA;

EID: 52449106255     PISSN: 03601234     EISSN: 15324109     Source Type: Journal    
DOI: 10.1080/03601230802234302     Document Type: Article

References (25)

1. Moscardi, F. Assessment of the application of baculoviruses for control of Lepidoptera. Annu. Rev. Entomol. 1999, 44, 257-89.
2. Moscardi, F.; Santos, B. Producao comercial de nucleopoliedrosis de Anticarsia gemmatalis HUBNER (Lep.: Noctuidae) em laboratorio. Proceedings of the IX Simposio de Controle Biologico. Recife, Brazil, 2005, SEB: Recife, Brazil; p. 42.
3. Orita, M.; Iwahana, H.; Kanazawa, H.; Hayashi, K.; Sekiya, T. Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc. Natl. Acad. Sci. USA 1989, 86, 2766-2770.
4. Highsmith, W.E.; Nataraj, A.J.; Jin, Q.; O'Connor, J.M.; El-Nabi, S.H.; Kusukawa, N.; et al. Use of DNA toolbox for the characterization of mutation scanning methods. II: Evaluation of single-strand conformation polymorphism analysis. Electrophoresis 1999, 20, 1195-1203.
5. Nataraj, A.J.; Olivos-Glander, I.; Kusukawa, N.; Highsmith, W.E. Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection. Electrophoresis 1999, 20, 1177-1185.
6. O'Connell, C.D.; Atha, D.H.; Oldenburg, M.C.; Tian, J.; Siebert, M.; Handrow, D.; et al. Detection of p53 genemutation: Analysis by single-strand conformation polymorphism and cleavage fragment length polymorphism. Electrophoresis 1999, 20, 1211-1223.
7. Kaczanowski, R.; Trzeciak, L.; Kucharczyk, K. Multitemperature single-strand conformation polymorphism. Electrophoresis 2001, 22, 3539-3545.
8. Quinto, J.D.; Wang, C.K. A high throughput single-stranded conformation polymorphism assay for detection, subtyping and genotyping of influenza viruses. International Congress Series. 2004, 1263, 653-657.
9. Lugovtsev, V.Y.; Vodeiko, G.M.; Strupczewski, C.M.; Levandowski, R.A. Simple and rapid strategy for genetic characterization of influenza B virus reassortants. J. Virol. Methods 2005, 124, 203-210.
10. Stamenkovic, G.; Guduric, J.; Velickovic, Z.; Skerl, V.; Krtolica, K.; Veljkovic, E.; et al. Analysis of 5′ non-coding region in hepatitis C virus by single-strand conformation polymorphism and low-stringency single specific primer PCR. Clin. Chem. Lab. Med. 2001, 39, 948-952.
11. Roque-Afonso, A.M.; Ducoulombier, D.; Di Liberto, G.; Kara, R.; Gigou, M.; Dussaix, E.; et al. Compartmentalization of hepatitis C virus genotypes between plasma and peripheral blood mononuclear cells. J. Virol. 2005, 79, 6349-6357.
12. Sambrook, J.; Russell, D.R. Molecular cloning - a laboratory manual 3rd Ed.; Irwin, N, Janssen, K.A, Argentine, J, Curtis, S, Zierler, M, McInerny, N, Brown, D, Schaefer, S. Cold Spring Harbor Laboratory Press: New York, 2001.
13. Smith, I.R.L.; van Beek, N.A.M.; Podgwaite, J.D.; Wood, H.A. Physical map and polyhedrin gene sequence of Lymantria dispar nuclear polyhedrosis virus. Gene. 1988, 71, 97-105.
14. Garcia-Maruniak, A.; Maruniak, J.E.; Zanotto, P.M.A.; Doumbouya, A.E.; Liu, J.C.; Merrit, T.M.; Lanoie, J.S. Sequence analysis of the genome of the Neodiprion sertifer nucleopolyhedrovirus. J.Virol. 2004, 78, 7036-7051.
15. Fauquet, C.M.; Mayo, M.A.; Maniloff, J.; Desselberger, U.; Bal, L.A. Virus Taxonomy: Classification and Nomenclature of Viruses. In VIII Report of the International Committee on Taxonomy of Viruses; Elsevier Academic Press: San Diego, CA, USA, 2005.
16. Jehle, J.A.; Blissard, G.W.; Bonning, B.C.; Cory, J.S.; Herniou, E.A.; Rohrmann, G.F.; Theilmann, D.A.; Thiem, S.M.; Vlak, J.M. On the classification and nomenclature of baculoviruses: a proposal for revision. Archives Virol. 2006, 151, 1257-1266.
17. Woo, S.D.Rapid detection ofmultiple nucleopolyhedroviruses using polymerase chain reaction. Mol. Cells. 2001, 11, 334-340.
18. de Moraes, R.R.; Maruniak, J.E.; Funderburk, J.E. Methods for detection of Anticarsia gemmatalis nucleopolyhedrovirus DNA in soil. Appl. Environ. Microbiol. 1999, 65, 2307-2311.
19. Lee, H.H.; Miller, L.K. Isolation of genotypic variants of Autographa californica nuclear polyhedrosis virus. J.Virol. 1978, 27, 754-767.
20. Knell, J.D.; Summers, M.D. Investigation of genetic heterogeneity in wild isolates of Spodoptera frugiperda nuclear polyhedrosis virus by restriction endonuclease analysis of plaque-purified variants. Virology 1981, 112, 190-197.
21. Maeda, S.; Mukohara, Y.; Kondo, A. Characteristically distinct isolates of nuclear polyhedrosis virus from Spodoptera litura. J. Gen.Virol. 1990, 71, 2631-2639.
22. Weitzman, M.D.; Possee, R.D.; King, L. A. Characterization of two variants of Panolis flammea multiple nucleocapsid nuclear polyhedrosis virus. J. Gen. Virol. 1992, 73, 1881-1886.
23. Li, L.; Li, Q.; Willis, L.G.; Erlandson, M.; Theilmann, D.A; Donly, C. Complete comparative genomic analysis of two field isolates of Mamestra configurata nucleopolyhedrovirus. A. J. Gen. Virol. 2005, 86, 91-105.
24. O'Reilly, D.R.; Passareli, A.L.; Goldman, I.F.; Miller, L.K. Characterization of the DA26 gene in a hypervariable region of the Autographa californica nuclear polyhedrosis virus genome. J. Gen. Virol. 1990, 71, 1029-1037.
25. Kamita, G.K.; Maeda, S.; Hammock, B.D. High-frequency homologous recombination between baculoviruses involves DNA replication. J. Virol. 2003, 77, 13053-13061.