Structural insights into the elastin mimetic (LGGVG)6 using solid-state 13C NMR experiments and statistical analysis of the PDB

Biopolymers

Volumn 89, Issue 8, 2008, Pages 668-679

  Kumashiro, Kristin K ^a   Ohgo, Kosuke ^b   Niemczura, Walter P ^a   Onizuka, Allen K ^a   Asakura, Tetsuo ^b  

^a UNIVERSITY OF HAWAII   (United States)

^b TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

Author keywords

13C NMR; Elastin; Solid state NMR; Spin diffusion NMR

Indexed keywords

GLYCOPROTEINS; HYDROPHOBICITY; MUSCULOSKELETAL SYSTEM;

13C NMR; CONNECTIVE TISSUES; CROSSLINKED; ELASTIN; HYDROPHOBIC DOMAINS; HYDROPHOBIC PROTEINS; MOLECULAR SCALES; POLYPEPTIDE SEQUENCES; SOLID-STATE NMR; SPIN-DIFFUSION NMR; STRUCTURAL INSIGHTS;

BLOOD VESSELS;

ELASTIN; LYSYLGLYCYLGLYCYLVALYLGLYCINE; PEPTIDE DERIVATIVE; POLY(VALYLPROLYLGLYCYLVALYLGLYCINE); POLYPEPTIDE; UNCLASSIFIED DRUG; BIOMIMETIC MATERIAL; PEPTIDE; POLY(LEUCYL GLYCYL GLYCYL VALYL GLYCYL); POLY(LEUCYL-GLYCYL-GLYCYL-VALYL-GLYCYL);

ARTICLE; BIOSTATISTICS; CARBON NUCLEAR MAGNETIC RESONANCE; CONTROLLED STUDY; MATHEMATICAL ANALYSIS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEIC ACID STRUCTURE; PEPTIDE SYNTHESIS; PROTEIN DATA BANK; PROTEIN MOTIF; PROTEIN STRUCTURE; PROTEIN TARGETING; RESIDUE ANALYSIS; SEQUENCE ANALYSIS; STATISTICAL ANALYSIS; TANDEM REPEAT; CHEMISTRY; COMPUTER SIMULATION; DIFFUSION; NUCLEAR MAGNETIC RESONANCE; PROTEIN CONFORMATION; PROTEIN DATABASE; X RAY CRYSTALLOGRAPHY;

VERTEBRATA;

BIOMIMETIC MATERIALS; COMPUTER SIMULATION; CRYSTALLOGRAPHY, X-RAY; DATABASES, PROTEIN; DIFFUSION; ELASTIN; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDES; PROTEIN CONFORMATION;

EID: 52049125449     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.20984     Document Type: Article

References (36)

1. Rosenbloom, J.; Abrams, W. R.; Mecham, R. FASEB J 1993, 7, 1208-1218.
2. Debelle, L.; Tamburro, A. M. Int J Biochem Cell Biol 1999, 31, 261-272.
3. Urry, D. W. J Prot Chem 1988, 7, 1-34.
4. Urry, D. W. J Phys Chem B, 1997, 101, 11007-11028.
5. Martino, M.; Coviello, A.; Tamburro, A. M. Int J Biol Macromol 2000, 27, 59-64.
6. Tycko, R. Prog Nucl Magn Reson Spectrosc 2003, 42, 53-68.
7. Balbach, J. J.; Petkova, A. T.; Oyler, N. A.; Antzutkin, O. N.; Gordon, D. J.; Meredith, S. C.; Tycko, R. Biophys J 2002, 83, 1205-1216.
8. Balbach, J. J.; Ishii, Y.; Antzutkin, O. N.; Leapman, R. D.; Rizzo, N. W.; Dyda, F.; Reed, J.; Tycko, R. Biochemistry 2000, 39, 13748-13659.
9. Naito, A.; Tuzi, S.; Saito, H. Eur J Biochem 1994, 224, 729-734.
10. Saito, H.; Yokoi, M. J Biochem 1992, 111,376-382.
11. Asakura, T.; Ito, T.; Okudaira, M.; Kameda, T. Macromolecules 1999, 32, 4940-4946.
12. Asakura, T.; Yamane, T.; Nakazawa, Y.; Kameda, T.; Ando, K. Biopolymers 2001, 58, 521-525.
13. Ashida, J.; Ohgo, K.; Komatsu, K.; Kubota, A.; Asakura, T. J Biomol NMR 2003, 25, 91-103.
14. Perry, A.; Stypa, M. P.; Tenn, B. K.; Kumashiro, K. K. Biophys J 2002, 82, 1086-1095.
15. Kumashiro, K. K.; Kurano, T. L.; Niemczura, W. P.; Martino, M.; Tamburro, A. M. Biopolymers 2003, 70, 221-226.
16. Ohgo, K.; Ashida, J.; Kumashiro, K. K.; Asakura, T. Macromolecules 2005, 38, 6038-6047.
17. Ohgo, K.; Niemczura, W. P.; Ashida, J.; Okonogi, M.; Asakura, T.; Kumashiro, K. K. Biomacromolecules 2006, 7, 3306-3310.
18. Yao, X. L.; Hong, M. J Am Chem Soc 2004, 126, 4199-4210.
19. Perry, A.; Stypa, M. P.; Foster, J. A.; Kumashiro, K. K. J Am Chem Soc 2002, 124, 6832-6833.
20. Pometun, M. S.; Chekmenev, E. Y.; Wittebort, R. J. J Biol Chem 2004, 279, 7982-7987.
21. Carpino, L. A.; Han, G. Y. J Am Chem Soc 1970, 92, 5748-5749.
22. Pines, A.; Gibby, M. G.; Waugh, J. S. J Chem Phys 1973, 59, 569-590.
23. Asakura, T.; Ashida, J.; Yamane, T.; Kameda, T.; Nakazawa, Y.; Ohgo, K.; Komatsu, K. J Mol Biol 2001, 306, 291-305.
24. Henrichs, P. M.; Linder, M. J Magn Reson 1984, 58, 458-461.
25. Edzes, H. T.; Bernards, J. P. C. J Am Chem Soc 1984, 106, 1515-1517.
26. Bennett, A. E.; Ok, J. H.; Griffin, R. G.; Vega, S. J Chem Phys 1992, 96, 8624-8627.
27. Lovell, S. C.; Davis, I. W.; Arendall, W. B., III; deBakker, P. I. W.; Word, J. M.; Prisant, M. G.; Richardson, J. S.; Richardson, D. C. Proteins: Struct Funct Genet 2003, 50, 437-450.
28. Iwadate, M.; Asakura, T.; Williamson, M. P. J Biomol NMR 1999, 13, 199-211.
29. Asakura, T.; Iwadate, M.; Demura, M.; Williamson, M. P. Int J Biol Macromol 1999, 24, 167-171.
30. Tycko, R.; Berger, A. E. J Magn Reson 1999, 141,141-147.
31. Weliky, D. P.; Bennett, A. E.; Zvi, A.; Anglister, J.; Steinbach, P. J.; Tycko, R. Nature Struct Biol 1999, 6, 141-145.
32. Asakura, T.; Ohgo, K.; Komatsu, K.; Kanenari, M.; Okuyama, K. Macromolecules 2005, 38, 7397-7403.
33. Tamburro, A. M.; Bochicchio, B.; Pepe, A. Biochemistry 2003, 42, 13347-13362.
34. Tamburro, A. M.; Pepe, A.; Bochicchio, B. Biochemistry 2006, 45, 9518-9530.
35. Kishore, A. I.; Herberstein, M. E.; Craig, C. L.; Separovic, F. Biopolymers 2002, 61,287-297.
36. Bonev, B.; Grieve, S.; Herberstein, M. E.; Kishore, A. I.; Watts, A.; Separovic, F. Biopolymers 2006, 82, 134-143.