Effects of deposition of heavy-metal-polluted harbor mud on microbial diversity and metal resistance in sandy marine sediments

Archives of Environmental Contamination and Toxicology

Volumn 55, Issue 3, 2008, Pages 372-385

  Toes, Ann Charlotte M ^a   Finke, Niko ^b   Kuenen, J Gijs ^a   Muyzer, Gerard ^a  

^a DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^b MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CADMIUM; COPPER; IRON;

ABUNDANCE; BACTERIUM; COMMUNITY COMPOSITION; COMPARATIVE STUDY; CONCENTRATION (COMPOSITION); DEPOSITION; HARBOR; HEAVY METAL; MARINE SEDIMENT; MICROBIAL COMMUNITY; MUD; PHYLOGENY; REDEPOSITION; SEDIMENT POLLUTION; SPECIES DIVERSITY;

ARTICLE; FLAVOBACTERIA; MARINE ENVIRONMENT; MESOCOSM; MICROBIAL DIVERSITY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEOBACTERIA; SANDY SOIL; SEDIMENT; UNINDEXED SEQUENCE; WATER ANALYSIS; WATER POLLUTANT; WATER TREATMENT;

BACTERIA, AEROBIC; DNA, ARCHAEAL; DRUG RESISTANCE, BACTERIAL; ELECTROPHORESIS, AGAR GEL; ENVIRONMENTAL POLLUTANTS; GEOLOGIC SEDIMENTS; METALS, HEAVY; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

ARCHAEA; BACTERIA (MICROORGANISMS); FLAVOBACTERIACEAE; GAMMAPROTEOBACTERIA;

EID: 52049119846     PISSN: 00904341     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00244-008-9135-4     Document Type: Article

References (46)

1. SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410
2. G Bortone E Arevalo I Deibel 2004 Sediment and dredged material treatment J Soil Sed 4 225 232
3. BSH (Bundesamt für Seeschifffahrt und Hydrographie) (2002) Bund/Länder-Messprogramm: Messprogramm Meeresumwelt; Zustandsbericht, 1997-1998 für Nordsee und Ostsee. Hamburg Rostock, Hamburg p 176
4. Y-X Chen G-W Zhu G-M Tian H-L Chen 2003 Phosphorus and copper leaching from dredged sediment applied on a sandy loam soil: column study Chemosphere 53 1179 1187
5. MA Cook AM Osborn J Bettandorff PA Sobecky 2001 Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities Microbiology 147 2089 2101
6. MJL Coolen EC Hopmans WIC Rijpstra 2004 Evolution of the methane cycle in Ace Lake (Antarctica) during the Holocene: response of methanogens and methanotrophs to environmental changes Org Geochem 35 1151 1167
7. D De Beer F Wenzhofer TG Ferdelman 2005 Transport and mineralization rates in North Sea sandy intertidal sediments, Sylt-Romo Basin, Wadden Sea Limnol Oceanogr 50 113 127
8. M Diaz-Ravina E Baath 1996 Development of metal tolerance in soil bacterial communities exposed to experimentally increased metal levels Appl Environ Microbiol 62 2970 2977
9. EEA (European Environmental Agency) (2003) Trends in metals and persistent organic pollutants. In: Green N, Bjerkeng B, Hylland K, Ruus A, Rygg B (eds) Hazardous substances in the European marine environment. Norwegian Institute for Water Research, Copenhagen, pp 0-85
10. TG Ferdelmann C Lee S Pantoja J Harder BM Bebout H Fossing 1997 Sulfate reduction and methanogenesis in Thioploca-dominated off the coast of Chile Geochem Cosmochim Acta 61 3065 3079
11. DC Gillan B Danis P Pernet G Joly P Dubois 2005 Structure of sediment-associated microbial communities along a heavy-metal contamination gradient in the marine environment Appl Environ Microbiol 71 679 690
12. IJ Good 1953 The population frequencies of species and the estimation of population parameters Biometrika 40 237 262
13. Hansen HP, Koroleff F (1999) Determination of nutrients. In: Grasshoff K, Kremling K, Ehrhard M (eds) Methods of seawater analysis. Wiley-VCH, Berlin, pp 159-229
14. LaMontagne MG, Michel J, FC, Holden PA, Reddy CA (2002) Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis. J Microbiol Methods 49:255-264
15. T Leipe M Kersten S Heise 2005 Ecotoxicity assessment of natural attenuation effects at a historical dumping site in the western Baltic Sea Marine Pollut Bull 50 446 459
16. W Ludwig O Strunk R Westram 2004 ARB: a software environment for sequence data Nucleic Acids Res 32 1363 1371
17. JR Marchesi AJ Weightman 2000 Modified primers facilitate rapid screening of 16S rRNA gene libraries Biotechniques 29 48 50
18. JT Markwiese PJS Colberg 2000 Bacterial reduction of copper-contaminated ferric oxide: copper toxicity and the interaction between fermentative and iron-reducing bacteria Arch Environ Contam Toxicol 38 139 146
19. A-J Miao W-X Wang P Juneau 2005 Comparison of Cd, Cu, and Zn toxic effects on four marine phytoplankton by pulse-amplified-modulated fluorometry Environ Toxicol Chem 24 2603 2611
20. G Muyzer EC de Waal AG Uitterlinden 1993 Profiling of complex microbial populations by denaturing gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA Appl Environ Microbiol 59 695 700
21. N Musat U Werner K Knittel 2006 Microbial community structure of sandy intertidal sediments in the North Sea, Sylt-Romo Basin, Wadden Sea Syst Appl Microbiol 29 333 348
22. S Nayar DJ Miller A Hunt BPL Goh LM Chou 2007 Environmental effects of dredging on sediment nutrients, carbon and granulometry in a tropical estuary Environ Monit Assess 127 1 13
23. DH Nies 1999 Microbial heavy-metal resistance Appl Microbiol Biotechnol 51 730 750
24. U Nubel F Garcia-Pichel G Muyzer 1997 PCR primers to amplify 16S rRNA genes from cyanobacteria Appl Environ Microbiol 63 3327 3332
25. SM Powell JP Bowman I Snape JS Stark 2003 Microbial community variation in pristine and polluted nearshore Antarctic sediments FEMS Microbiol Ecol 45 135 145
26. N Ramaiah J De 2003 Unusual rise in mercury-resistant bacteria in coastal environs Microb Ecol 45 444 454
27. LD Rasmussen SJ Soerensen 1998 The effect of long-term exposure to mercury on the bacterial community in marine sediment Curr Microbiol 36 291 197
28. Sandaa R-A, Torsvik V (1999a) Analysis of bacterial communities in heavy metal-contaminated soils at different levels of resolution. FEMS Microbiol Ecol 30:237-251
29. Sandaa R-A, Enger Ö, Torsvik V (1999b) Abundance and diversity of Archaea in heavy metal-contaminated soils. Appl Environ Microbiol 65:3293-3297
30. Schäfer H, Muyzer G (2001) Denaturing gradient gel electrophoresis in marine microbial ecology. In: Paul JH (ed) Methods in microbiology, Vol. 30. Academic Press, St. Petersburg, FL
31. M Schauer R Massana C Pedros-Alio 2000 Spatial differences in bacterioplankton composition along the Catalan coast (NW Mediterranean) assessed by molecular fingerprinting FEMS Microbiol Ecol 33 51 59
32. K Schiff D Diehl A Valkirs 2004 Copper emissions from antifouling paint on recreational vessels Marine Pollut Bull 48 371 377
33. Silver S (1996) Bacterial resistances to toxic metal ions: a review. Gene 179:9-19
34. DR Singleton MA Furlong SL Rathbun WB Whitman 2001 Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples Appl Environ Microbiol 67 4374 4376
35. PA Sobecky TJ Mincer MC Chang A Toukdarian DR Helinski 1998 Isolation of broad-host-range replicons from marine sediment bacteria Appl Environ Microbiol 64 2822 2830
36. JJ Sorci JD Paulauskis TE Ford 1999 16S rRNA restriction fragment length polymorphism analysis of Bacterial diversity as a biomarker of ecological health in polluted sediments from New Bedford Harbor, Massachusetts, USA Marine Pollut Bull 38 663 675
37. LJ Stal 2003 Microphytobenthos, their extracellular polymeric substances, and the morphogenesis of intertidal sediments Geomicrobiol J 20 463 478
38. W Surosz KA Palinska 2004 Effects of heavy-metal stress on cyanobacterium Anabaena flos-aquae Arch Environ Contam Toxicol 48 40 48
39. S Tankere-Muller H Zhang W Davison 2007 Fine scale remobilisation of Fe, Mn, Co, Ni, Cu and Cd in contaminated marine sediment Marine Chem 106 1-2 192 207
40. GA Van den Berg GGA Meijers LM Van der Heijdt JJG Zwolsman 2001 Dredging-related mobilisation of trace metals: a case study in The Netherlands Water Res 35 1979 1986
41. F von Wintzingerode UB Gobel E Stackebrandt 1997 Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis FEMS Microbiol Rev 21 213 229
42. Q Wang D Kim DD Dionysiou GA Sorial D Timberlake 2004 Sources and remediation for mercury contamination in aquatic systems: a literature review Environ Pollut 131 323 336
43. J Warnken RJK Dunn PR Teasdale 2004 Investigation of recreational boats as a source of copper at anchorage sites using time-integrated diffusive gradients in thin film and sediment measurements Marine Pollut Bull 49 833 843
44. Widdel F, Pfennig N (1984) Dissimilatory sulfate- or sulfur-reducing bacteria. In: Krieg NR, Holt JD (eds) Bergey's manual of systematic bacteriology, Vol. 1. The Williams & Wilkins Co., Baltimore, pp 663-679
45. H Zhang W Davison 1999 Diffusional characteristics of hydrogels used in DGT and DET techniques Anal Chim Acta 398 329 340
46. H Zhang W Davison S Miller W Tych 1995 In situ high resolution measurements of fluxes of Ni, Cu, Fe and Mn and concentrations of Zn and Cd in porewaters by DGT Geochim Cosmochim Acta 59 4181 4192