Relationship between homoeologous regulatory and structural genes in allopolyploid genome - A case study in bread wheat

BMC Plant Biology

Volumn 8, Issue , 2008, Pages

  Khlestkina, Elena K ^a   Röder, Marion S ^b   Salina, Elena A ^a  

^a INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

^b LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

TRITICUM AESTIVUM;

FLAVONOID;

ARTICLE; BIOSYNTHESIS; BREAD; CHROMOSOME MAP; COTYLEDON; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENE; GENE EXPRESSION REGULATION; GENETIC VARIABILITY; GENETICS; GENOTYPE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PIGMENTATION; PLANT CHROMOSOME; POLYPLOIDY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEEDLING; SEQUENCE HOMOLOGY; TIME; WHEAT;

BASE SEQUENCE; BREAD; CHROMOSOMES, PLANT; COTYLEDON; EXPRESSED SEQUENCE TAGS; FLAVONOIDS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENOTYPE; MOLECULAR SEQUENCE DATA; PHYSICAL CHROMOSOME MAPPING; PIGMENTATION; POLYPLOIDY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEEDLING; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TIME FACTORS; TRITICUM; VARIATION (GENETICS);

EID: 52049110497     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-8-88     Document Type: Article

References (46)

1. Resistance of common wheat to bunt [abstract]. ED Bogdanova AT Sarbaev KK Makhmudova, Proceedings of the Research Conference on Genetics: 2002; Moscow 2002 43 44
2. Nature's swiss army knife: the diverse protective roles of anthocyanins in leaves. KS Gould, J Biomed Biotech 2004 5 314 320 10.1155/S1110724304406147
3. Flavonoids and UV photoprotection in Arabidopsis mutants. KG Ryan EE Swinny C Winefield KR Markham, Z Naturforsch [C] 2001 56 9-10 745 754 11724379
4. Biosynthesis of flavonoids and effects of stress. B Winkel-Shirley, Cur Op Plant Biol 2002 5 218 223 10.1016/S1369-5266(02)00256-X
5. Genes for anthocyanin pigmentation in wheat: review and microsatellite-based mapping. EK Khlestkina MS Röder TA Pshenichnikova AV Simonov EA Salina A Börner, Chromosome Mapping Research Developments New York: NOVA Science Publishers, Inc, USA, Verrity JF, Abbington LE, 2008 155 175 https://www.novapublishers.com/catalog/product_info.php?products_id=6838
6. The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. J Paz-Ares D Ghosal U Wienand PA Peterson H Saedler, EMBO J 1987 6 3553 3558 3428265
7. Genomic mapping of defense response genes in wheat. WL Li JD Faris JM Chittoor JE Leach SH Hulbert DJ Liu PD Chen BS Gill, Theor Appl Genet 1999 98 226 233 10.1007/s001220051062
8. Molecular mapping, phenotypic expression and geographical distribution of genes determining anthocyanin pigmentation of coleoptiles in wheat (Triticum aestivum L.). EK Khlestkina EG Pestsova MS Röder A Börner, Theor Appl Genet 2002 104 632 637 10.1007/s00122-001-0788-x 12582667
9. Transient expression of anthocyanin in developing wheat coleoptile by maize c1 and B-peru regulatory genes for anthocyanin synthesis. N Ahmed M Maekawa S Utsugi E Himi H Ablet K Rikiishi K Noda, Breed Sci 2003 52 29 43 10.1270/jsbbs.53.29
10. The wheat Rc gene for red coleoptile colour codes for a transcriptional activator of late anthocyanin biosynthesis genes. N Ahmed M Maekawa S Utsugi K Rikiishi A Ahmad K Noda, J Cereal Sci 2006 44 54 58 10.1016/j.jcs.2006.03.002
11. Colour genes (R and Rc) for grain and coleoptile upregulate flavonoid biosynthesis genes in wheat. E Himi A Nisar K Noda, Genome 2005 48 747 754 10.1139/g05-026 16094442
12. Differential combinatorial interactions of cis-acting elements recognized by R2R3-MYB, BZIP, and BHLH factors control light-responsive and tissue-specific activation of phenylpropanoid biosynthesis genes. U Hartmann M Sagasser F Mehrtens R Stracke B Weisshaar, Plant Mol Biol 2005 57 155 171 10.1007/s11103-004-6910-0 15821875
13. Expression of chalcone synthase, dihydroflavonol reductase, and flavonone-3-hydroxilase in mutants of barley deficient in anthocyanin and proanthocyanidin biosynthesis. M Meldgaard, Theor Appl Genet 1992 83 695 706 10.1007/BF00226687
14. Flavanone 3-hydroxylase transcripts and flavonol accumulation are temporally coordinate in maize anthers. GB Deboo MC Albertsen LP Taylor, Plant J 1995 7 703 713 10.1046/j.1365-313X.1995.07050703.x 7773305
15. Function and transcript analysis of gibberellin-biosynthetic enzymes in wheat. NE Appleford DJ Evans JR Lenton P Gaskin SJ Croker KM Devos AL Phillips P Hedden, Planta 2006 223 568 582 10.1007/s00425-005-0104-0 16160850
16. Homoeologous gene silencing in hexaploid wheat. A Bottley GM Xia RM Koebner, Plant J 2006 47 897 906 10.1111/j.1365-313X.2006.02841.x 16899084
17. Comparative sequence analysis of the phytochrome C gene and its upstream region in allohexaploid wheat reveals new data on the evolution of its three constituent genomes. KM Devos J Beales Y Ogihara AN Doust, Plant Mol Biol 2005 58 625 641 10.1007/s11103-005-6801-z 16158239
18. Expression profile of two storage-protein gene families in hexaploid wheat revealed by large-scale analysis of expressed sequence tags. K Kawaura K Mochida Y Ogihara, Plant Physiol 2005 139 1870 1880 16306141 10.1104/pp.105.070722
19. Intragenic diversity and functional conservation of the three homoeologous loci of the KN1-type homeobox gene Wknox1 in common wheat. R Morimoto T Kosugi C Nakamura S Takumi, Plant Mol Biol 2005 57 907 924 10.1007/s11103-005-3247-2 15952073
20. Three genomes differentially contribute to the biosynthesis of benzoxazinones in hexaploid wheat. T Nomura A Ishihara RC Yanagita TR Endo H Iwamura, Proc Natl Acad Sci USA 2005 102 16490 16495 16260753 10.1073/pnas.0505156102
21. Genetic and epigenetic alteration among three homoeologous genes of a class E MADS box gene in hexaploid wheat. N Shitsukawa C Tahira K Kassai C Hirabayashi T Shimizu S Takumi K Mochida K Kawaura Y Ogihara K Murai, Plant Cell 2007 19 1723 1737 17586655 10.1105/tpc.107.051813
22. Identification of microsatellite markers for a leaf rust resistance gene introgressed into common wheat from Triticum timopheevii. I Leonova A Börner E Budashkina N Kalinina O Unger M Röder E Salina, Plant Breed 2004 123 93 95 10.1046/j.0179-9541.2003.00906.x
23. Development and QTL assessment of Triticum aestivum-Aegilops tauschii introgression lines. EG Pestsova MS Röder A Börner, Theor Appl Genet 2006 112 634 647 10.1007/s00122-005-0166-1 16341683
24. Analysis of flavanone 3-hydroxylase in Arabidopsis seedlings. Coordinate regulation with chalcone synthase and chalcone isomerase. MK Pelletier BW Shirley, Plant Physiol 1996 111 339 345 8685272 10.1104/pp.111.1.339
25. VF Dorofeev ON Korovina Eds, Flora of Cultivated Plants Leningrad: Kolos 1979
26. The origin of Cultivated Wheat. M Feldman, The Wheat Book A History of Wheat Breeding Paris: Lavoisier Publishing, Benjean AP, Angus WJ, 2001 3 56
27. Cloning and molecular analysis of structural genes involved in flavonoid and stilbene biosynthesis in grape (Vitis vinifera L.). F Sparvoli C Martin A Scienza G Gavazzi C Tonelli, Plant Mol Biol 1994 24 743 755 10.1007/BF00029856 8193299
28. Cloning of two flavanone 3-hydroxylase (F3H) genes from oilseed rape (Brassica napus) and their differential expression between black- and yellow-seeded lines. B-B Xu Z-L Tang L Chen J-N Li Y-R Chai, GenBank 2007 http://www.ncbi.nlm.nih.gov/sites/entrez?term=xu%20tang%20chen%20chai&cmd= Search&db=nuccore&QueryKey=13
29. Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thaliana. M Aguade, Mol Biol Evol 2001 18 1 9 11141187
30. A putative O-methyltransferase from barley is induced by fungal pathogens and UV light. L Gregersen AB Christensen J Sommer-Knudsen DB Collinge, Plant Mol Biol 1994 26 1797 1806 10.1007/BF00019493 7858218
31. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. K Kashkush M Feldman AA Levy, Genetics 2002 160 1651 1659 11973318
32. WA Smit AF Bochkov R Caple, Organic synthesis. The science behind the art Cambridge: The Royal Society of Chemistry Press 1998
33. The genetic control of anthocyanin biosythesis by homoeologous chromosomes in wheat. MD Gale RB Flavell, Genet Res Camb 1971 18 237 244
34. Nullisomic analysis in common wheat. ER Sears, Amer Nat 1953 87 245 252 10.1086/281780
35. The deletion stocks of common wheat. TR Endo BS Gill, J Hered 1996 87 295 307
36. Detection of genetic diversity in closely related bread wheat using microsatellite markers. J Plaschke MW Ganal MS Röder, Theor Appl Genet 1995 91 1001 1007 10.1007/BF00223912
37. Multiple sequence alignment with hierarchical clustering. F Corpet, Nucl Acids Res 1988 16 10881 10890 2849754 10.1093/nar/16.22.10881
38. A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA. W Rychlik RE Rhoads, Nucl Acids Res 1989 17 8543 8551 2587212 10.1093/nar/17.21.8543
39. MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. S Kumar K Tamura M Nei, Briefings in Bioinformatics 2004 5 150 163 10.1093/bib/5.2.150 15260895
40. A microsatellite map of wheat. MS Röder V Korzun K Wendehake J Plaschke M-H Tixier P Leroy MW Ganal, Genetics 1998 149 2007 2023 9691054
41. Nucleotide sequence of one of two tandem genes encoding phenylalanine ammonia-lyase in Triticum aestivum. YC Liao HP Li F Kreuzaler R Fischer, Plant Physiol 1996 112 1398 1398
42. Isolation and characterization of two closely linked phenylalanine ammonia-lyase genes from wheat. HP Li YC Liao, Yi Chuan Xue Bao 2003 30 907 912 (paper in Chinese). 14669506
43. Cloning and expression of two chalcone synthase and a flavonoid 3'5'-Hydroxylase 3'-end cDNAs from developing seeds of blue-grained wheat involved in anthocyanin biosynthetic pathway. G Yang B Li J Gao J Liu X Zhao Q Zheng Y Tong Z Li, J Integr Plant Biol 2004 46 588 594
44. Isolation and location of three homoeologous dihydroflavonol-4-reductase (DFR) genes of wheat and their tissue-dependent expression. E Himi K Noda, J Exp Bot 2004 55 365 375 10.1093/jxb/erh046 14718498
45. Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1. JD Munkvold RA Greene CE Bermudez-Kandianis CM La Rota H Edwards SF Sorrells T Dake D Benscher R Kantety AM Linkiewicz J Dubcovsky ED Akhunov J Dvorák Miftahudin JP Gustafson MS Pathan HT Nguyen DE Matthews S Chao GR Lazo DD Hummel OD Anderson JA Anderson JL Gonzalez-Hernandez JH Peng N Lapitan LL Qi B Echalier BS Gill KG Hossain V Kalavacharla SF Kianian D Sandhu M Erayman KS Gill PE McGuire CO Qualset ME Sorrells, Genetics 2004 168 639 650 15514041 10.1534/genetics.104.034819
46. Isolation and characterization of wheat ANS genes. E Himi T Osaka K Noda, GenBank 2006 http://www.ncbi.nlm.nih.gov/sites/entrez?term= himi%20osaka%20noda&cmd=Search&db=nuccore&QueryKey=4