Pep line: A software pipeline for high-throughput direct mapping of tandem mass spectrometry data on genomic sequences

Journal of Proteome Research

Volumn 7, Issue 5, 2008, Pages 1873-1883

  Ferro, Myriam ^a   Tardif, Marianne ^a   Reguer, Erwan ^b   Cahuzac, Romain ^a,c   Bruley, Christophe ^a,c   Vermat, Thierry ^d   Nugues, Estelle ^d   Vigouroux, Marielle ^d   Vandenbrouck, Yves ^a,d   Garin, Jérôme ^a,c   Viari, Alain ^b  

^a CEA GRENOBLE   (France)

^b INSERM   (France)

^c UNIV GRENOBLE ALPES   (France)

^d INRIA   (France)

Author keywords

Bioinformatics, genome annotation; Gene structure; Peptide sequence tag; Proteomics; Q TOF; Six frame translation; Tandem mass spectrometry

Indexed keywords

ALGORITHM; ARABIDOPSIS; ARTICLE; CHLOROPLAST; COMPUTER PROGRAM; DNA SEQUENCE; EXON; GENE SEQUENCE; GENE STRUCTURE; GENOME; GENOME SIZE; NONHUMAN; NUCLEOTIDE SEQUENCE; PEPTIDE MAPPING; PRIORITY JOURNAL; TANDEM MASS SPECTROMETRY; AMINO ACID SEQUENCE; ANIMAL; CHEMISTRY; CYTOLOGY; EVALUATION; GENETICS; INSTRUMENTATION; MASS SPECTROMETRY; METHODOLOGY; MOLECULAR GENETICS; SEQUENCE ALIGNMENT;

ARABIDOPSIS THALIANA;

ARABIDOPSIS PROTEIN; PEPTIDE;

ALGORITHMS; AMINO ACID SEQUENCE; ANIMALS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; CHLOROPLASTS; GENOME; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PEPTIDES; SEQUENCE ALIGNMENT; SOFTWARE;

EID: 52049102297     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr070415k     Document Type: Article

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